AT4G30270

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
14819192 .. 14820595
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30270.1

Sequence Viewer

Length: 810 bp
ATGTCTCCTTTCAAAATATTCTTCTTCACGACTCTTCTCGTGGCGGCGTTTTCAGTGTCGGCTGCTGATTTCAACACTGACGTCAACGTAGCTTGGGGAAATGGCCGTGGGAAGATACTCAACAACGGCCAGCTTCTTACTCTCTCCTTAGACAAATCCTCTGGTTCCGGTTTTCAATCCAAAACAGAGTATTTGTTTGGAAAGATTGATATGCAGATTAAGCTTGTTCCTGGTAACTCTGCAGGAACAGTCACAACTTTTTACCTAAAATCCGAAGGATCCACTTGGGATGAGATTGATTTTGAGTTCTTGGGTAATATGAGTGGAGATCCTTATACTTTACACACTAATGTTTACACTCAAGGTAAAGGTGACAAAGAGCAACAATTCCATCTCTGGTTCGACCCAACCGCCAATTTCCACACTTACTCAATCCTCTGGAACCCTCAAAGAATCATATTGACCGTCGATGACACACCCATTAGAGAGTTTAAAAACTATGAGTCTCTCGGTGTCTTGTTTCCAAAGAACAAGCCGATGAGGATGTACGCGAGTTTATGGAACGCAGACGATTGGGCAACAAGAGGCGGTCTTGTTAAAACTGATTGGTCTAAAGCTCCATTCATGGCTTCTTACAGAAACATTAAGATTGACTCGAAACCAAACTCCAATTGGTACACTCAAGAAATGGATTCAACAAGCCAAGCTAGACTCAAATGGGTTCAGAAGAATTACATGATCTACAATTATTGTACTGACCATAGGAGGTTTCCACAGGGAGCTCCTAAGGAATGCACAACAAGCTCATAG

Protein Analysis

269

Amino Acids

30.76

Weight (kDa)

8.36

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 25 - 205 3e-66 Glycosyl hydrolases family 16
XET_C PF06955 221 - 265 5.2e-21 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccII CGCG 1 cut(s) 551
AciI CCGC 3 cut(s) 44, 411, 588
AclWI GGATC 3 cut(s) 273, 286, 323
AcoI YGGCCR 2 cut(s) 103, 127
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 3 cut(s) 548, 677, 754
AgsI TTSAA 4 cut(s) 13, 73, 176, 696
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 7 cut(s) 92, 133, 223, 617, 707, 782, 804
AluI AGCT 7 cut(s) 92, 133, 223, 617, 707, 782, 804
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 2 cut(s) 9, 510
AlwI GGATC 3 cut(s) 273, 286, 323
AoxI GGCC 2 cut(s) 103, 127
ApeKI GCWGC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 383
AxyI CCTNAGG 1 cut(s) 786
BamHI GGATCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 784
BauI CACGAG 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 784
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 399
BceAI ACGGC 2 cut(s) 90, 142
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 9, 510
BfaI CTAG 1 cut(s) 708
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 2 cut(s) 45, 63
BlsI GCNGC 2 cut(s) 46, 64
Bme1390I CCNGG 1 cut(s) 231
BmiI GGNNCC 3 cut(s) 166, 280, 443
BmrFI CCNGG 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 345, 666
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 106
BsaWI WCCGGW 1 cut(s) 167
Bse21I CCTNAGG 1 cut(s) 786
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 2 cut(s) 295, 549
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 551
BshFI GGCC 2 cut(s) 105, 129
BsiHKAI GWGCWC 1 cut(s) 784
BsiSI CCGG 1 cut(s) 168
BsmAI GTCTC 2 cut(s) 9, 510
BsmI GAATGC 1 cut(s) 797
BsnI GGCC 2 cut(s) 105, 129
Bsp1286I GDGCHC 1 cut(s) 784
Bsp143I GATC 3 cut(s) 278, 328, 738
BspACI CCGC 3 cut(s) 44, 411, 588
BspANI GGCC 2 cut(s) 105, 129
BspFNI CGCG 1 cut(s) 551
BspLI GGNNCC 3 cut(s) 166, 280, 443
BspMAI CTGCAG 1 cut(s) 244
BspPI GGATC 3 cut(s) 273, 286, 323
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 3 cut(s) 278, 328, 738
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 250, 466
Bst6I CTCTTC 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 148, 786
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 2 cut(s) 295, 549
BstFNI CGCG 1 cut(s) 551
BstKTI GATC 3 cut(s) 281, 331, 741
BstMAI GTCTC 2 cut(s) 9, 510
BstMBI GATC 3 cut(s) 278, 328, 738
BstMWI GCNNNNNNNGC 2 cut(s) 220, 801
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 240
BstUI CGCG 1 cut(s) 551
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 2 cut(s) 278, 328
BstYI RGATCY 2 cut(s) 278, 328
Bsu36I CCTNAGG 1 cut(s) 786
BsuRI GGCC 2 cut(s) 105, 129
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 2 cut(s) 295, 549
BtsIMutI CAGTG 2 cut(s) 60, 75
Cac8I GCNNGC 1 cut(s) 131
Csp6I GTAC 3 cut(s) 547, 676, 753
CviAII CATG 2 cut(s) 625, 736
CviQI GTAC 3 cut(s) 547, 676, 753
DdeI CTNAG 2 cut(s) 148, 786
DpnI GATC 3 cut(s) 280, 330, 740
DpnII GATC 3 cut(s) 278, 328, 738
DraI TTTAAA 1 cut(s) 493
EaeI YGGCCR 2 cut(s) 103, 127
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 782
Eco24I GRGCYC 1 cut(s) 784
Eco53kI GAGCTC 1 cut(s) 782
Eco81I CCTNAGG 1 cut(s) 786
EcoICRI GAGCTC 1 cut(s) 782
EcoRII CCWGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 784
FaeI CATG 2 cut(s) 628, 739
FatI CATG 2 cut(s) 624, 735
Fnu4HI GCNGC 2 cut(s) 45, 63
FokI GGATG 2 cut(s) 302, 556
FriOI GRGCYC 1 cut(s) 784
Fsp4HI GCNGC 2 cut(s) 45, 63
FspBI CTAG 1 cut(s) 708
GluI GCNGC 2 cut(s) 45, 63
HaeIII GGCC 2 cut(s) 105, 129
HapII CCGG 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 2 cut(s) 628, 739
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 6 cut(s) 31, 453, 503, 653, 692, 711
HpaII CCGG 1 cut(s) 168
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 3 cut(s) 85, 355, 678
Hpy188I TCNGA 2 cut(s) 274, 726
Hpy188III TCNNGA 3 cut(s) 28, 439, 683
Hpy8I GTNNAC 3 cut(s) 85, 355, 678
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 2 cut(s) 250, 466
HpyCH4IV ACGT 2 cut(s) 81, 87
HpyCH4V TGCA 3 cut(s) 214, 242, 795
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 801
HpyF3I CTNAG 2 cut(s) 148, 786
HpySE526I ACGT 2 cut(s) 81, 87
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 2 cut(s) 628, 739
Kzo9I GATC 3 cut(s) 278, 328, 738
LmnI GCTCC 3 cut(s) 622, 779, 787
LpnPI CCDG 9 cut(s) 143, 147, 181, 216, 228, 243, 382, 424, 761
Lsp1109I GCAGC 1 cut(s) 49
MaeI CTAG 1 cut(s) 708
MaeII ACGT 2 cut(s) 81, 87
MaeIII GTNAC 3 cut(s) 233, 250, 371
MalI GATC 3 cut(s) 280, 330, 740
MboI GATC 3 cut(s) 278, 328, 738
MboII GAAGA 5 cut(s) 13, 16, 26, 124, 739
MfeI CAATTG 1 cut(s) 670
MflI RGATCY 2 cut(s) 278, 328
MhlI GDGCHC 1 cut(s) 784
MluCI AATT 5 cut(s) 386, 415, 670, 730, 745
MlyI GAGTC 4 cut(s) 25, 512, 647, 705
MnlI CCTC 6 cut(s) 169, 446, 456, 534, 578, 759
MseI TTAA 4 cut(s) 219, 492, 597, 645
MslI CAYNNNNRTG 1 cut(s) 348
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 231
MunI CAATTG 1 cut(s) 670
Mva1269I GAATGC 1 cut(s) 797
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 551
MwoI GCNNNNNNNGC 2 cut(s) 220, 801
NdeII GATC 3 cut(s) 278, 328, 738
NlaIII CATG 2 cut(s) 628, 739
NlaIV GGNNCC 3 cut(s) 166, 280, 443
NmuCI GTSAC 2 cut(s) 250, 371
PctI GAATGC 1 cut(s) 797
PfeI GAWTC 2 cut(s) 453, 692
PkrI GCNGC 2 cut(s) 46, 64
PleI GAGTC 4 cut(s) 25, 511, 647, 705
PpsI GAGTC 4 cut(s) 25, 511, 647, 705
Psp124BI GAGCTC 1 cut(s) 784
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 3 cut(s) 166, 280, 443
PstI CTGCAG 1 cut(s) 244
PsuI RGATCY 2 cut(s) 278, 328
RsaI GTAC 3 cut(s) 548, 677, 754
RsaNI GTAC 3 cut(s) 547, 676, 753
RseI CAYNNNNRTG 1 cut(s) 348
SacI GAGCTC 1 cut(s) 784
SaqAI TTAA 4 cut(s) 219, 492, 597, 645
SatI GCNGC 2 cut(s) 45, 63
Sau3AI GATC 3 cut(s) 278, 328, 738
SchI GAGTC 4 cut(s) 25, 512, 647, 705
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 784
SfcI CTRYAG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 2 cut(s) 360, 681
SmoI CTYRAG 2 cut(s) 360, 681
Sse9I AATT 5 cut(s) 386, 415, 670, 730, 745
SsiI CCGC 3 cut(s) 44, 411, 588
SspI AATATT 1 cut(s) 18
SspMI CTAG 1 cut(s) 708
SstI GAGCTC 1 cut(s) 784
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 2 cut(s) 250, 466
TaiI ACGT 2 cut(s) 84, 90
TaqI TCGA 3 cut(s) 402, 468, 656
TasI AATT 5 cut(s) 386, 415, 670, 730, 745
TatI WGTACW 1 cut(s) 752
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 2 cut(s) 453, 692
Tru1I TTAA 4 cut(s) 219, 492, 597, 645
Tru9I TTAA 4 cut(s) 219, 492, 597, 645
TscAI CASTG 2 cut(s) 60, 82
TseFI GTSAC 2 cut(s) 250, 371
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 2 cut(s) 250, 371
TspDTI ATGAA 1 cut(s) 613
TspRI CASTG 2 cut(s) 60, 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 669
XspI CTAG 1 cut(s) 708
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.