RLG00000009339

Xyloglucan endo-transglycosylase (XET) C-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000460
Physical Location & Seq
Forward (+)
51275569 .. 51276825
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009339

Sequence Viewer

Length: 858 bp
ATGGTTAAGATATATGCTGTAGTTTTGGTTATGTTCTTCGACATCTTGGTGGCCTCGTCGGCTGGTAACTTCAACCAAGATTTTGATATAACATGGGGCGATGGGCGCGCCAAAATACTCAATAATGCGCAGCTACTCACGCTGTCCCTTGACAAGACTTCCGGGTCGGGGTTCAAGTCCAGGAATCAGTACCTGTTTGGAAAGATTGATATGCAGATTAAGCTCGTGCCTGGTAACTCTGCCGGTACCGTTACAGCTTACTATCTATCTTCGTTGGGGTCGGCTCATGATGAAATAGACTTTGAGTTTCTTGGCAACCTAAGCGGAGATCCTTATATTCTACACACAAATGTTTTCACACAAGGCAAGGGAAATAGAGAGCAGCAATTTTATCTTTGGTTCGATCCCACCAAAGACTTCCACACCTACTCCGTCTTGTGGAACCCTCAAAGCATCATATTCTCTGTCGATGGCACACCTATTCGAGAGTTCAAGAATTTAGGATCGAGGGGAATCCCATTCCCAAAGAACCAAGCAATGTGGATCTACTCAAGCCTTTGGAACGCAGATGACTGGGCGACACGCGGTGGACTTGTGAAGACAGACTGGAGTAAAGCTCCATTCACAGCCTCGTACACAAACTTCAACGCCCAAGCATGCATTTGGTCTTCTGGTTCTTCCTCTTGTTCTTCTTCTCCTTCTAGTTCTTCAAAAGGGGCATGGTTCACCCAATCATTGGATGCCACAGGGAAAGAAAGAATAAAATGGGTTCAAAAGAACTATATGATCTACAACTATTGCAAGGATACCAAGCGCTTCCCACAGGGACTTCCTCTTGAATGCACAGTAGTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

286

Amino Acids

31.92

Weight (kDa)

8.54

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 24 - 205 1.7e-66 Glycosyl hydrolases family 16
XET_C PF06955 237 - 281 2.1e-21 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 163
Acc16I TGCGCA 1 cut(s) 129
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 736
AccII CGCG 2 cut(s) 108, 585
AciI CCGC 2 cut(s) 324, 585
AclWI GGATC 4 cut(s) 323, 398, 511, 551
AcsI RAATTY 1 cut(s) 496
AdeI CACNNNGTG 1 cut(s) 587
AfaI GTAC 3 cut(s) 191, 247, 635
AfeI AGCGCT 1 cut(s) 815
AfiI CCNNNNNNNGG 3 cut(s) 168, 438, 736
AgsI TTSAA 7 cut(s) 73, 175, 493, 646, 711, 773, 839
AjnI CCWGG 2 cut(s) 179, 229
AluBI AGCT 4 cut(s) 133, 223, 257, 617
AluI AGCT 4 cut(s) 133, 223, 257, 617
AlwI GGATC 4 cut(s) 323, 398, 511, 551
AlwNI CAGNNNCTG 1 cut(s) 193
Aor51HI AGCGCT 1 cut(s) 815
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 130, 382
ApoI RAATTY 1 cut(s) 496
AscI GGCGCGCC 1 cut(s) 106
Asp718I GGTACC 1 cut(s) 245
AspLEI GCGC 4 cut(s) 108, 110, 130, 816
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 718
BanI GGYRCC 1 cut(s) 245
BarI GAAGNNNNNNTAC 2 cut(s) 626, 658
BauI CACGAG 1 cut(s) 224
BbsI GAAGAC 2 cut(s) 605, 660
BbvI GCAGC 2 cut(s) 142, 394
BccI CCATC 2 cut(s) 95, 464
BciT130I CCWGG 2 cut(s) 181, 231
BciVI GTATCC 1 cut(s) 799
BcnI CCSGG 1 cut(s) 163
BfaI CTAG 1 cut(s) 702
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 817
BfuI GTATCC 1 cut(s) 799
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 2 cut(s) 131, 383
BlsI GCNGC 2 cut(s) 132, 384
Bme1390I CCNGG 3 cut(s) 163, 181, 231
BmiI GGNNCC 2 cut(s) 247, 443
BmrFI CCNGG 3 cut(s) 163, 181, 231
BmrI ACTGGG 1 cut(s) 583
BmsI GCATC 2 cut(s) 462, 730
BmuI ACTGGG 1 cut(s) 583
BpiI GAAGAC 2 cut(s) 605, 660
BplI GAGNNNNNCTC 2 cut(s) 601, 633
BpmI CTGGAG 1 cut(s) 628
Bpu10I CCTNAGC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 535
BpuMI CCSGG 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 438, 736
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 578, 611
Bse3DI GCAATG 1 cut(s) 543
BseBI CCWGG 2 cut(s) 181, 231
BseGI GGATG 1 cut(s) 745
BseLI CCNNNNNNNGG 3 cut(s) 168, 438, 736
BseMI GCAATG 1 cut(s) 543
BseNI ACTGG 2 cut(s) 578, 611
BsePI GCGCGC 1 cut(s) 106
BseXI GCAGC 2 cut(s) 142, 394
Bsh1236I CGCG 2 cut(s) 108, 585
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 245
BsiSI CCGG 2 cut(s) 162, 243
BslFI GGGAC 2 cut(s) 130, 840
BslI CCNNNNNNNGG 3 cut(s) 168, 438, 736
BsmFI GGGAC 2 cut(s) 130, 840
BsmI GAATGC 1 cut(s) 845
BsnI GGCC 1 cut(s) 53
Bsp143I GATC 5 cut(s) 328, 403, 503, 543, 786
BspACI CCGC 2 cut(s) 324, 585
BspANI GGCC 1 cut(s) 53
BspFNI CGCG 2 cut(s) 108, 585
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 247, 443
BspPI GGATC 4 cut(s) 323, 398, 511, 551
BspT107I GGYRCC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 2 cut(s) 578, 611
BssAI RCCGGY 1 cut(s) 242
BssHII GCGCGC 1 cut(s) 106
BssMI GATC 5 cut(s) 328, 403, 503, 543, 786
BssSI CACGAG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 224
Bst2UI CCWGG 2 cut(s) 181, 231
Bst4CI ACNGT 2 cut(s) 250, 847
BstC8I GCNNGC 2 cut(s) 108, 658
BstDEI CTNAG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 745
BstFNI CGCG 2 cut(s) 108, 585
BstH2I RGCGCY 1 cut(s) 817
BstHHI GCGC 4 cut(s) 108, 110, 130, 816
BstKTI GATC 5 cut(s) 331, 406, 506, 546, 789
BstMBI GATC 5 cut(s) 328, 403, 503, 543, 786
BstMWI GCNNNNNNNGC 5 cut(s) 59, 105, 139, 220, 321
BstNI CCWGG 2 cut(s) 181, 231
BstNSI RCATGY 1 cut(s) 660
BstSCI CCNGG 3 cut(s) 161, 179, 229
BstSFI CTRYAG 1 cut(s) 18
BstUI CGCG 2 cut(s) 108, 585
BstV1I GCAGC 2 cut(s) 142, 394
BstV2I GAAGAC 2 cut(s) 605, 660
BstX2I RGATCY 2 cut(s) 328, 543
BstYI RGATCY 2 cut(s) 328, 543
BsuI GTATCC 1 cut(s) 799
BsuRI GGCC 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 745
Cac8I GCNNGC 2 cut(s) 108, 658
CaiI CAGNNNCTG 1 cut(s) 193
CciI TCATGA 1 cut(s) 286
CfoI GCGC 4 cut(s) 108, 110, 130, 816
Cfr10I RCCGGY 1 cut(s) 242
Csp6I GTAC 3 cut(s) 190, 246, 634
CspCI CAANNNNNGTGG 2 cut(s) 521, 556
CviAII CATG 4 cut(s) 93, 287, 657, 720
CviJI RGCY 9 cut(s) 53, 62, 133, 223, 257, 284, 555, 617, 629
CviKI_1 RGCY 9 cut(s) 53, 62, 133, 223, 257, 284, 555, 617, 629
CviQI GTAC 3 cut(s) 190, 246, 634
DdeI CTNAG 1 cut(s) 320
DpnI GATC 5 cut(s) 330, 405, 505, 545, 788
DpnII GATC 5 cut(s) 328, 403, 503, 543, 786
DraIII CACNNNGTG 1 cut(s) 587
DrdI GACNNNNNNGTC 1 cut(s) 163
DseDI GACNNNNNNGTC 1 cut(s) 163
Eco47III AGCGCT 1 cut(s) 815
EcoRII CCWGG 2 cut(s) 179, 229
EcoT22I ATGCAT 1 cut(s) 662
FaeI CATG 4 cut(s) 96, 290, 660, 723
FaqI GGGAC 2 cut(s) 130, 840
FatI CATG 4 cut(s) 92, 286, 656, 719
Fnu4HI GCNGC 2 cut(s) 131, 383
FokI GGATG 1 cut(s) 752
Fsp4HI GCNGC 2 cut(s) 131, 383
FspBI CTAG 1 cut(s) 702
FspI TGCGCA 1 cut(s) 129
GlaI GCGC 4 cut(s) 107, 109, 129, 815
GluI GCNGC 2 cut(s) 131, 383
GsuI CTGGAG 1 cut(s) 628
HaeII RGCGCY 1 cut(s) 817
HaeIII GGCC 1 cut(s) 53
HapII CCGG 2 cut(s) 162, 243
HhaI GCGC 4 cut(s) 108, 110, 130, 816
Hin1II CATG 4 cut(s) 96, 290, 660, 723
Hin6I GCGC 4 cut(s) 106, 108, 128, 814
HinP1I GCGC 4 cut(s) 106, 108, 128, 814
HinfI GANTC 2 cut(s) 184, 513
HpaII CCGG 2 cut(s) 162, 243
HphI GGTGA 1 cut(s) 718
Hpy166II GTNNAC 3 cut(s) 590, 636, 726
Hpy188III TCNNGA 4 cut(s) 287, 485, 493, 836
Hpy8I GTNNAC 3 cut(s) 590, 636, 726
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 708
HpyCH4III ACNGT 2 cut(s) 250, 847
HpyCH4V TGCA 4 cut(s) 214, 660, 801, 843
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 105, 139, 220, 321
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 4 cut(s) 96, 290, 660, 723
HspAI GCGC 4 cut(s) 106, 108, 128, 814
KpnI GGTACC 1 cut(s) 249
Kzo9I GATC 5 cut(s) 328, 403, 503, 543, 786
LmnI GCTCC 1 cut(s) 622
Lsp1109I GCAGC 2 cut(s) 142, 394
LweI GCATC 2 cut(s) 462, 730
MaeI CTAG 1 cut(s) 702
MaeIII GTNAC 3 cut(s) 65, 233, 250
MalI GATC 5 cut(s) 330, 405, 505, 545, 788
MboI GATC 5 cut(s) 328, 403, 503, 543, 786
MboII GAAGA 8 cut(s) 28, 261, 610, 660, 669, 681, 684, 699
MflI RGATCY 2 cut(s) 328, 543
MluCI AATT 2 cut(s) 386, 496
MnlI CCTC 6 cut(s) 64, 456, 501, 640, 691, 843
Mph1103I ATGCAT 1 cut(s) 662
MseI TTAA 2 cut(s) 6, 219
MslI CAYNNNNRTG 2 cut(s) 47, 348
MspI CCGG 2 cut(s) 162, 243
MspR9I CCNGG 3 cut(s) 163, 181, 231
Mva1269I GAATGC 1 cut(s) 845
MvaI CCWGG 2 cut(s) 181, 231
MvnI CGCG 2 cut(s) 108, 585
MwoI GCNNNNNNNGC 5 cut(s) 59, 105, 139, 220, 321
NciI CCSGG 1 cut(s) 163
NdeII GATC 5 cut(s) 328, 403, 503, 543, 786
NlaIII CATG 4 cut(s) 96, 290, 660, 723
NlaIV GGNNCC 2 cut(s) 247, 443
NsbI TGCGCA 1 cut(s) 129
NsiI ATGCAT 1 cut(s) 662
NspI RCATGY 1 cut(s) 660
PaeI GCATGC 1 cut(s) 660
PagI TCATGA 1 cut(s) 286
PalAI GGCGCGCC 1 cut(s) 106
PauI GCGCGC 1 cut(s) 106
PctI GAATGC 1 cut(s) 845
PfeI GAWTC 2 cut(s) 184, 513
PflMI CCANNNNNTGG 1 cut(s) 736
PfoI TCCNGGA 1 cut(s) 179
PkrI GCNGC 2 cut(s) 132, 384
Psp6I CCWGG 2 cut(s) 179, 229
PspGI CCWGG 2 cut(s) 179, 229
PspN4I GGNNCC 2 cut(s) 247, 443
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 2 cut(s) 328, 543
PteI GCGCGC 1 cut(s) 106
RsaI GTAC 3 cut(s) 191, 247, 635
RsaNI GTAC 3 cut(s) 190, 246, 634
RseI CAYNNNNRTG 2 cut(s) 47, 348
SaqAI TTAA 2 cut(s) 6, 219
SatI GCNGC 2 cut(s) 131, 383
Sau3AI GATC 5 cut(s) 328, 403, 503, 543, 786
ScrFI CCNGG 3 cut(s) 163, 181, 231
SetI ASST 8 cut(s) 135, 195, 225, 259, 321, 428, 481, 619
SfaNI GCATC 2 cut(s) 462, 730
SfcI CTRYAG 1 cut(s) 18
SgsI GGCGCGCC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 47, 348
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
SphI GCATGC 1 cut(s) 660
Sse9I AATT 2 cut(s) 386, 496
SsiI CCGC 2 cut(s) 324, 585
SspMI CTAG 1 cut(s) 702
StyD4I CCNGG 3 cut(s) 161, 179, 229
TaaI ACNGT 2 cut(s) 250, 847
TaqI TCGA 5 cut(s) 39, 402, 468, 484, 506
TasI AATT 2 cut(s) 386, 496
TfiI GAWTC 2 cut(s) 184, 513
Tru1I TTAA 2 cut(s) 6, 219
Tru9I TTAA 2 cut(s) 6, 219
TseI GCWGC 2 cut(s) 130, 382
TspDTI ATGAA 1 cut(s) 306
TspGWI ACGGA 1 cut(s) 421
Van91I CCANNNNNTGG 1 cut(s) 736
XapI RAATTY 1 cut(s) 496
XceI RCATGY 1 cut(s) 660
XspI CTAG 1 cut(s) 702
Zsp2I ATGCAT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.