Prupe.1G069800_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000460
Physical Location & Seq
Reverse (-)
4958393 .. 4960245
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G069800.1

Sequence Viewer

Length: 858 bp
ATGACTAAGATATTCTTGGTTCTAGTACTTCTGCAAACTTTGTTCAACATTTTGGTTGTGGCTTCGGCTGGTAACCTCAACCAAGATTTTGACTTAACATGGGGTGACGGTCGAGCGCAAATACTCGACAACGGGCAGCTTCTTACGCTGTCCCTGGACAAGACTTCGGGGTCGGGTTTCCGGTCCAAGAATCAGTACTTGTTTGGGAAAATTGATATGCAGATCAAGCTTGTGCCTGGTAACTCCGCTGGTACTGTTACGGCTTACTATCTGTCCTCGTTGGGTTCTACTCATGATGAGATAGATTTTGAGTTTCTAGGCAACCTAAGCGGAGATCCTTATATTCTGCACACAAATGTTTTCACACAAGGGAAGGGTAATAGGGAGCAACAATTCTATCTTTGGTTTGATCCCACCAAAGACTTCCACACCTACTCCATCTTGTGGAACCCTCAAAGCATCATATTCTCTGTGGATGGGACACCCATTAGACAGTTCAAGAATTTAGAATCGAAGGGAATTCCTTTCCCAAAGAACCAAGCCATGTCAATATACTCAAGCCTGTGGAATGCAGATGATTGGGCCACACGTGGAGGGCTTGTGAAGGCAGATTGGAGCAAAGCCCCATTTACAGCCTCATACAGAAACTTCAACGCCCAAGCTTGCACTTGGTCTTCAGGCTCTTCCCGTTGTTCTTCTTCCAGTTCCTCAGGCTCCTCCAGCTGGTTGAGTCAGTCACTGGATGCAACTGGCCAAGAAAGAATTAAATGGGTTCAGAAGAACTACATGATTTACAACTATTGCAGAGATACCAAGCGCTTCCCACAAGGGTTTCCAGCTGAGTGCTCATTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

286

Amino Acids

31.91

Weight (kDa)

8.25

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 444
AciI CCGC 2 cut(s) 246, 330
AclWI GGATC 2 cut(s) 329, 404
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 2 cut(s) 502, 519
AcuI CTGAAG 1 cut(s) 660
AcvI CACGTG 1 cut(s) 590
AfaI GTAC 3 cut(s) 27, 197, 253
AfeI AGCGCT 1 cut(s) 818
AfiI CCNNNNNNNGG 2 cut(s) 444, 723
AflIII ACRYGT 1 cut(s) 587
AgsI TTSAA 3 cut(s) 46, 499, 652
AjnI CCWGG 2 cut(s) 153, 235
AluBI AGCT 5 cut(s) 139, 229, 662, 723, 839
AluI AGCT 5 cut(s) 139, 229, 662, 723, 839
Alw21I GWGCWC 1 cut(s) 848
AlwI GGATC 2 cut(s) 329, 404
AlwNI CAGNNNCTG 1 cut(s) 739
Aor51HI AGCGCT 1 cut(s) 818
AoxI GGCC 2 cut(s) 582, 751
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 2 cut(s) 502, 519
AspLEI GCGC 2 cut(s) 118, 819
AspS9I GGNCC 2 cut(s) 183, 582
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 183
AxyI CCTNAGG 1 cut(s) 709
BalI TGGCCA 1 cut(s) 753
BbrPI CACGTG 1 cut(s) 590
BbsI GAAGAC 1 cut(s) 666
Bbv12I GWGCWC 1 cut(s) 848
BbvI GCAGC 1 cut(s) 148
BccI CCATC 2 cut(s) 446, 470
BceAI ACGGC 1 cut(s) 276
BciT130I CCWGG 2 cut(s) 155, 237
BfaI CTAG 2 cut(s) 23, 317
BfoI RGCGCY 1 cut(s) 820
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
BmcAI AGTACT 2 cut(s) 27, 197
Bme1390I CCNGG 2 cut(s) 155, 237
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 183, 582
BmiI GGNNCC 2 cut(s) 449, 715
BmrFI CCNGG 2 cut(s) 155, 237
BmsI GCATC 2 cut(s) 468, 733
BpiI GAAGAC 1 cut(s) 666
BpmI CTGGAG 1 cut(s) 703
Bpu10I CCTNAGC 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 541
BsaAI YACGTR 1 cut(s) 590
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 4 cut(s) 419, 449, 585, 615
Bsc4I CCNNNNNNNGG 2 cut(s) 444, 723
Bse1I ACTGG 3 cut(s) 702, 744, 754
Bse21I CCTNAGG 1 cut(s) 709
BseBI CCWGG 2 cut(s) 155, 237
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 2 cut(s) 481, 748
BseLI CCNNNNNNNGG 2 cut(s) 444, 723
BseMII CTCAG 2 cut(s) 723, 831
BseNI ACTGG 3 cut(s) 702, 744, 754
BseRI GAGGAG 1 cut(s) 706
BseXI GCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 332
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 584, 753
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 848
BsiSI CCGG 1 cut(s) 181
BslFI GGGAC 2 cut(s) 136, 493
BslI CCNNNNNNNGG 2 cut(s) 444, 723
BsmFI GGGAC 2 cut(s) 136, 493
BsmI GAATGC 1 cut(s) 574
BsnI GGCC 2 cut(s) 584, 753
Bsp1286I GDGCHC 1 cut(s) 848
Bsp143I GATC 3 cut(s) 222, 334, 409
BspACI CCGC 2 cut(s) 246, 330
BspANI GGCC 2 cut(s) 584, 753
BspCNI CTCAG 2 cut(s) 722, 832
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 2 cut(s) 449, 715
BspPI GGATC 2 cut(s) 329, 404
BspQI GCTCTTC 1 cut(s) 688
BsrI ACTGG 3 cut(s) 702, 744, 754
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 3 cut(s) 222, 334, 409
Bst2UI CCWGG 2 cut(s) 155, 237
Bst4CI ACNGT 3 cut(s) 110, 256, 495
Bst6I CTCTTC 1 cut(s) 688
BstBAI YACGTR 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 4 cut(s) 6, 326, 709, 840
BstEII GGTNACC 1 cut(s) 71
BstF5I GGATG 2 cut(s) 481, 748
BstH2I RGCGCY 1 cut(s) 820
BstHHI GCGC 2 cut(s) 118, 819
BstKTI GATC 3 cut(s) 225, 337, 412
BstMBI GATC 3 cut(s) 222, 334, 409
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 4 cut(s) 145, 226, 327, 720
BstNI CCWGG 2 cut(s) 155, 237
BstPI GGTNACC 1 cut(s) 71
BstSCI CCNGG 2 cut(s) 153, 235
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 666
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
Bsu36I CCTNAGG 1 cut(s) 709
BsuRI GGCC 2 cut(s) 584, 753
BtsCI GGATG 2 cut(s) 481, 748
BtsIMutI CAGTG 1 cut(s) 737
Cac8I GCNNGC 1 cut(s) 664
CaiI CAGNNNCTG 1 cut(s) 739
CciI TCATGA 1 cut(s) 292
CfoI GCGC 2 cut(s) 118, 819
Cfr13I GGNCC 2 cut(s) 183, 582
Csp6I GTAC 3 cut(s) 26, 196, 252
CviAII CATG 5 cut(s) 99, 293, 544, 787, 855
CviQI GTAC 3 cut(s) 26, 196, 252
DdeI CTNAG 4 cut(s) 6, 326, 709, 840
DpnI GATC 3 cut(s) 224, 336, 411
DpnII GATC 3 cut(s) 222, 334, 409
DrdI GACNNNNNNGTC 1 cut(s) 169
DseDI GACNNNNNNGTC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 751
Eam1104I CTCTTC 1 cut(s) 688
EarI CTCTTC 1 cut(s) 688
Eco47I GGWCC 1 cut(s) 183
Eco47III AGCGCT 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 660
Eco72I CACGTG 1 cut(s) 590
Eco81I CCTNAGG 1 cut(s) 709
Eco91I GGTNACC 1 cut(s) 71
EcoO65I GGTNACC 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 153, 235
FaeI CATG 5 cut(s) 102, 296, 547, 790, 858
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 2 cut(s) 136, 493
FatI CATG 5 cut(s) 98, 292, 543, 786, 854
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 2 cut(s) 488, 755
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 2 cut(s) 23, 317
GlaI GCGC 2 cut(s) 117, 818
GluI GCNGC 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 703
HaeII RGCGCY 1 cut(s) 820
HaeIII GGCC 2 cut(s) 584, 753
HapII CCGG 1 cut(s) 181
HhaI GCGC 2 cut(s) 118, 819
Hin1II CATG 5 cut(s) 102, 296, 547, 790, 858
Hin6I GCGC 2 cut(s) 116, 817
HinP1I GCGC 2 cut(s) 116, 817
HindIII AAGCTT 2 cut(s) 227, 660
HinfI GANTC 3 cut(s) 190, 509, 730
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 777
Hpy188III TCNNGA 2 cut(s) 293, 499
HpyAV CCTTC 3 cut(s) 367, 508, 598
HpyCH4III ACNGT 3 cut(s) 110, 256, 495
HpyCH4IV ACGT 1 cut(s) 589
HpyCH4V TGCA 7 cut(s) 34, 220, 349, 572, 666, 746, 804
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 226, 327, 720
HpyF3I CTNAG 4 cut(s) 6, 326, 709, 840
HpySE526I ACGT 1 cut(s) 589
Hsp92II CATG 5 cut(s) 102, 296, 547, 790, 858
HspAI GCGC 2 cut(s) 116, 817
Kzo9I GATC 3 cut(s) 222, 334, 409
LguI GCTCTTC 1 cut(s) 688
LmnI GCTCC 3 cut(s) 385, 615, 719
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 2 cut(s) 468, 733
MaeI CTAG 2 cut(s) 23, 317
MaeII ACGT 1 cut(s) 589
MaeIII GTNAC 5 cut(s) 71, 104, 239, 256, 735
MalI GATC 3 cut(s) 224, 336, 411
MboI GATC 3 cut(s) 222, 334, 409
MboII GAAGA 5 cut(s) 666, 675, 687, 690, 790
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 848
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 5 cut(s) 210, 392, 502, 519, 762
MluNI TGGCCA 1 cut(s) 753
MlyI GAGTC 1 cut(s) 739
MnlI CCTC 7 cut(s) 86, 286, 462, 587, 646, 718, 727
Mox20I TGGCCA 1 cut(s) 753
MscI TGGCCA 1 cut(s) 753
MseI TTAA 2 cut(s) 95, 765
MslI CAYNNNNRTG 2 cut(s) 354, 853
Msp20I TGGCCA 1 cut(s) 753
MspA1I CMGCKG 3 cut(s) 248, 723, 839
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 2 cut(s) 155, 237
Mva1269I GAATGC 1 cut(s) 574
MvaI CCWGG 2 cut(s) 155, 237
MwoI GCNNNNNNNGC 4 cut(s) 145, 226, 327, 720
NdeII GATC 3 cut(s) 222, 334, 409
NlaIII CATG 5 cut(s) 102, 296, 547, 790, 858
NlaIV GGNNCC 2 cut(s) 449, 715
NmuCI GTSAC 2 cut(s) 104, 735
PagI TCATGA 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 688
PctI GAATGC 1 cut(s) 574
PfeI GAWTC 2 cut(s) 190, 509
PflMI CCANNNNNTGG 1 cut(s) 444
PkrI GCNGC 1 cut(s) 138
PleI GAGTC 1 cut(s) 738
PmaCI CACGTG 1 cut(s) 590
PmlI CACGTG 1 cut(s) 590
PpsI GAGTC 1 cut(s) 738
Ppu21I YACGTR 1 cut(s) 590
Psp6I CCWGG 2 cut(s) 153, 235
PspCI CACGTG 1 cut(s) 590
PspEI GGTNACC 1 cut(s) 71
PspGI CCWGG 2 cut(s) 153, 235
PspN4I GGNNCC 2 cut(s) 449, 715
PspPI GGNCC 2 cut(s) 183, 582
PstNI CAGNNNCTG 1 cut(s) 739
PsuI RGATCY 1 cut(s) 334
PvuII CAGCTG 2 cut(s) 723, 839
RsaI GTAC 3 cut(s) 27, 197, 253
RsaNI GTAC 3 cut(s) 26, 196, 252
RseI CAYNNNNRTG 2 cut(s) 354, 853
SapI GCTCTTC 1 cut(s) 688
SaqAI TTAA 2 cut(s) 95, 765
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 3 cut(s) 222, 334, 409
Sau96I GGNCC 2 cut(s) 183, 582
ScaI AGTACT 2 cut(s) 27, 197
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 2 cut(s) 155, 237
SduI GDGCHC 1 cut(s) 848
SetI ASST 9 cut(s) 78, 141, 231, 327, 434, 592, 664, 725, 841
SfaNI GCATC 2 cut(s) 468, 733
SinI GGWCC 1 cut(s) 183
SmiMI CAYNNNNRTG 2 cut(s) 354, 853
SmlI CTYRAG 1 cut(s) 556
SmoI CTYRAG 1 cut(s) 556
Sse9I AATT 5 cut(s) 210, 392, 502, 519, 762
SsiI CCGC 2 cut(s) 246, 330
SspMI CTAG 2 cut(s) 23, 317
StyD4I CCNGG 2 cut(s) 153, 235
TaaI ACNGT 3 cut(s) 110, 256, 495
TaiI ACGT 1 cut(s) 592
TaqI TCGA 3 cut(s) 112, 126, 512
TasI AATT 5 cut(s) 210, 392, 502, 519, 762
TatI WGTACW 2 cut(s) 25, 195
TfiI GAWTC 2 cut(s) 190, 509
Tru1I TTAA 2 cut(s) 95, 765
Tru9I TTAA 2 cut(s) 95, 765
TscAI CASTG 1 cut(s) 744
TseFI GTSAC 2 cut(s) 104, 735
TseI GCWGC 1 cut(s) 136
Tsp45I GTSAC 2 cut(s) 104, 735
TspRI CASTG 1 cut(s) 744
Van91I CCANNNNNTGG 1 cut(s) 444
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 2 cut(s) 502, 519
XspI CTAG 2 cut(s) 23, 317
ZrmI AGTACT 2 cut(s) 27, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.