Rorug04G0039100

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
5976529 .. 5977011
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0039100.1

Sequence Viewer

Length: 426 bp
ATGGTTGCGGTGAAGAACATCATGGAAGTAGCTGAAGCTCCAGATTGCTCTCATATCCAAATCCATTCTTCTTCTCACTCTGTCAATCCAATTGCTAACGAACTACGCAGATTCAATCAGGAGAAGGCGTCTGCTCTTGAATTTGATGACAGTGAGAAGCAGAAAATCTACACAATTATTTCATTTAGTAATGTTCACAATGAAATCATCGAGCTCAAGGACTTGACTGTCTATTTTAATGCTCCAGTGTTTTTTTCTCATAATGACTTGATTTCTGAAAATATAATGGGTAATGACGAAGAAGAGAAACTCTACTTCATATATTTTGAGTATGGATCATACAATTACAGAGGCTTTGACATTGGGAATCACTTCAATGAATATGCAGGCTATGATTGTAACTACAGCTTATACCCAAGTACTTAA

Protein Analysis

141

Amino Acids

16.38

Weight (kDa)

4.63

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Choline_kinase PF01633 31 - 140 1.6e-27 Choline/ethanolamine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AciI CCGC 1 cut(s) 8
AclWI GGATC 1 cut(s) 343
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 1 cut(s) 421
AgsI TTSAA 3 cut(s) 115, 140, 376
AluBI AGCT 4 cut(s) 32, 38, 214, 408
AluI AGCT 4 cut(s) 32, 38, 214, 408
Alw21I GWGCWC 1 cut(s) 216
AlwI GGATC 1 cut(s) 343
ApoI RAATTY 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 22
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 403
BmcAI AGTACT 1 cut(s) 421
BpmI CTGGAG 2 cut(s) 24, 228
BpuEI CTTGAG 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bse1I ACTGG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 335
BspACI CCGC 1 cut(s) 8
BspPI GGATC 1 cut(s) 343
BsrI ACTGG 1 cut(s) 245
BssMI GATC 1 cut(s) 335
BssNI GRCGYC 1 cut(s) 128
Bst4CI ACNGT 2 cut(s) 152, 229
Bst6I CTCTTC 1 cut(s) 297
BstACI GRCGYC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 388
BstKTI GATC 1 cut(s) 338
BstMBI GATC 1 cut(s) 335
BstSFI CTRYAG 1 cut(s) 403
BtsIMutI CAGTG 2 cut(s) 157, 252
Cac8I GCNNGC 1 cut(s) 388
CseI GACGC 1 cut(s) 117
Csp6I GTAC 1 cut(s) 420
CviAII CATG 1 cut(s) 22
CviJI RGCY 6 cut(s) 32, 38, 214, 354, 390, 408
CviKI_1 RGCY 6 cut(s) 32, 38, 214, 354, 390, 408
CviQI GTAC 1 cut(s) 420
DpnI GATC 1 cut(s) 337
DpnII GATC 1 cut(s) 335
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 1 cut(s) 25
FatI CATG 1 cut(s) 21
FriOI GRGCYC 1 cut(s) 216
GsuI CTGGAG 2 cut(s) 24, 228
HgaI GACGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 1 cut(s) 25
HinfI GANTC 2 cut(s) 111, 367
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 3 cut(s) 41, 119, 137
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 152, 229
HpyCH4V TGCA 1 cut(s) 386
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 25
Kzo9I GATC 1 cut(s) 335
LmnI GCTCC 2 cut(s) 43, 247
LpnPI CCDG 4 cut(s) 54, 104, 258, 372
MaeIII GTNAC 1 cut(s) 398
MalI GATC 1 cut(s) 337
MboI GATC 1 cut(s) 335
MboII GAAGA 5 cut(s) 25, 60, 63, 311, 314
MfeI CAATTG 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 4 cut(s) 90, 140, 174, 343
MnlI CCTC 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 371
MseI TTAA 2 cut(s) 237, 424
MslI CAYNNNNRTG 1 cut(s) 375
MunI CAATTG 1 cut(s) 90
NdeII GATC 1 cut(s) 335
NlaIII CATG 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 2 cut(s) 111, 367
Psp124BI GAGCTC 1 cut(s) 216
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
RseI CAYNNNNRTG 1 cut(s) 375
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 237, 424
Sau3AI GATC 1 cut(s) 335
ScaI AGTACT 1 cut(s) 421
SduI GDGCHC 1 cut(s) 216
SetI ASST 4 cut(s) 34, 40, 216, 410
SfcI CTRYAG 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 4 cut(s) 90, 140, 174, 343
SsiI CCGC 1 cut(s) 8
SstI GAGCTC 1 cut(s) 216
TaaI ACNGT 2 cut(s) 152, 229
TaqI TCGA 1 cut(s) 210
TasI AATT 4 cut(s) 90, 140, 174, 343
TatI WGTACW 1 cut(s) 419
TfiI GAWTC 2 cut(s) 111, 367
Tru1I TTAA 2 cut(s) 237, 424
Tru9I TTAA 2 cut(s) 237, 424
TscAI CASTG 2 cut(s) 157, 252
TspDTI ATGAA 4 cut(s) 171, 216, 307, 393
TspRI CASTG 2 cut(s) 157, 252
XapI RAATTY 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 371
ZrmI AGTACT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.