Rmu_sc0001023.1_g000007

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001023.1
Physical Location & Seq
Forward (+)
24794 .. 26685
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001023.1_g000007.1.cds

Sequence Viewer

Length: 1050 bp
atgcttctgttcgttccatttctgctaattagctctgttatggttgcctcagctggaaacttcaaccaagactttcaggttacatggggggacggtcgagccaacatactcaacgacggccaacttctcactctctccctcgacaaagcctctggctctggttttgaatccaaaaacgaatacctcttcggcaagattgacatgcagctcaagcttgtcgccggaaactctgctggcaccgtcaccgcctactatttaaaatcagacgggtctacatgggatgagatagacttcgagttcttgggaaacctgagtggcaacccttacactcttcacaccaatgtcttcagccaaggcaaaggaaacagagaacagcaattccatctctggttcgacccaactgctgatttccacacctattccattctctggaatccacagcgcattgttttctctgttgatagtactcccattagagagttcaagaaccaagagtcgaaaggtgttccattcccaaagagccaagcaatgagaatacactcgagcctctggaatgctgatgattgggcaacaatgggaggacgtgtaaagacggattggaatgcagctccgttcactgcctcttacaggaatttcaatgctgaagcatgcatttgggcttctggatcatcttcttgcggtacaagcagtgcccctgcttcgactaatggagattggctttcgcaagaattggacagtgctagttatgcaaagctgagttgggtgcagaaaaactacatgatctacaattactgcacagatgtcaacagattccctcagggtctcccaccgtacacgaagacagagagcaagagagagacagagcttgagaagattcagatctttgtgaaaacggtaaccgggaagaccatcacccttgaggttgaatctagcgacactatcgacaacgcgcgtcaaggccaagattcaggagaaggaaagtatccccccagaccagcagatgctcattttcattggaaagctgctcgaggatggtcgtactcctactaa

Protein Analysis

349

Amino Acids

39.07

Weight (kDa)

5.58

Isoelectric Point (pI)

30.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 429
AccI GTMKAC 1 cut(s) 272
AccII CGCG 2 cut(s) 950, 952
AciI CCGC 2 cut(s) 246, 678
AclWI GGATC 1 cut(s) 673
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 2 cut(s) 331, 663
AfaI GTAC 4 cut(s) 466, 682, 833, 1040
AfiI CCNNNNNNNGG 2 cut(s) 429, 627
AflIII ACRYGT 1 cut(s) 583
AgsI TTSAA 5 cut(s) 64, 167, 484, 637, 926
AjiI CACGTC 1 cut(s) 584
AloI GAACNNNNNNTCC 2 cut(s) 363, 395
AluBI AGCT 8 cut(s) 33, 53, 208, 214, 608, 754, 865, 1022
AluI AGCT 8 cut(s) 33, 53, 208, 214, 608, 754, 865, 1022
Alw26I GTCTC 2 cut(s) 827, 851
AlwI GGATC 1 cut(s) 673
Ama87I CYCGRG 2 cut(s) 541, 1026
AoxI GGCC 2 cut(s) 118, 958
ApeKI GCWGC 3 cut(s) 205, 605, 1022
ApoI RAATTY 1 cut(s) 631
AspLEI GCGC 2 cut(s) 444, 952
AsuC2I CCSGG 1 cut(s) 901
AsuHPI GGTGA 2 cut(s) 235, 904
AvaI CYCGRG 2 cut(s) 541, 1026
AxyI CCTNAGG 1 cut(s) 816
BaeGI GKGCMC 1 cut(s) 694
BanI GGYRCC 1 cut(s) 236
BbsI GAAGAC 3 cut(s) 337, 845, 911
BbvCI CCTCAGC 1 cut(s) 49
BbvI GCAGC 3 cut(s) 217, 617, 1009
BccI CCATC 3 cut(s) 390, 917, 1026
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciVI GTATCC 1 cut(s) 993
BcnI CCSGG 1 cut(s) 901
BcoDI GTCTC 2 cut(s) 827, 851
BfaI CTAG 2 cut(s) 741, 930
BfuI GTATCC 1 cut(s) 993
BglII AGATCT 1 cut(s) 879
BisI GCNGC 3 cut(s) 206, 606, 1023
BlsI GCNGC 3 cut(s) 207, 607, 1024
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 901
BmeT110I CYCGRG 2 cut(s) 541, 1026
BmgBI CACGTC 1 cut(s) 584
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 901
BmsI GCATC 1 cut(s) 991
BpiI GAAGAC 3 cut(s) 337, 845, 911
Bpu10I CCTNAGC 1 cut(s) 49
BpuEI CTTGAG 3 cut(s) 194, 887, 938
BpuMI CCSGG 1 cut(s) 901
BsaBI GATNNNNATC 1 cut(s) 878
BsaI GGTCTC 1 cut(s) 827
BsaJI CCNNGG 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 2 cut(s) 429, 627
Bse21I CCTNAGG 1 cut(s) 816
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 1 cut(s) 878
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 2 cut(s) 286, 1037
BseJI GATNNNNATC 1 cut(s) 878
BseLI CCNNNNNNNGG 2 cut(s) 429, 627
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 4 cut(s) 63, 302, 746, 830
BseSI GKGCMC 1 cut(s) 694
BseXI GCAGC 3 cut(s) 217, 617, 1009
BsgI GTGCAG 2 cut(s) 778, 785
Bsh1236I CGCG 2 cut(s) 950, 952
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 120, 960
BshNI GGYRCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 97
BsiHKCI CYCGRG 2 cut(s) 541, 1026
BsiSI CCGG 2 cut(s) 222, 900
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 429, 627
BsmAI GTCTC 2 cut(s) 827, 851
BsmFI GGGAC 1 cut(s) 104
BsmI GAATGC 2 cut(s) 559, 607
BsnI GGCC 2 cut(s) 120, 960
Bso31I GGTCTC 1 cut(s) 827
BsoBI CYCGRG 2 cut(s) 541, 1026
Bsp1286I GDGCHC 1 cut(s) 694
Bsp143I GATC 3 cut(s) 665, 780, 879
BspACI CCGC 2 cut(s) 246, 678
BspANI GGCC 2 cut(s) 120, 960
BspCNI CTCAG 4 cut(s) 62, 303, 747, 829
BspFNI CGCG 2 cut(s) 950, 952
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 1 cut(s) 673
BspT107I GGYRCC 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 827
BsrDI GCAATG 1 cut(s) 534
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 3 cut(s) 665, 780, 879
BssT1I CCWWGG 1 cut(s) 352
Bst4CI ACNGT 5 cut(s) 95, 241, 737, 831, 895
Bst6I CTCTTC 2 cut(s) 191, 336
BstC8I GCNNGC 2 cut(s) 235, 649
BstDEI CTNAG 4 cut(s) 49, 311, 755, 816
BstEII GGTNACC 1 cut(s) 895
BstENI CCTNNNNNAGG 1 cut(s) 625
BstF5I GGATG 2 cut(s) 286, 1037
BstFNI CGCG 2 cut(s) 950, 952
BstHHI GCGC 2 cut(s) 444, 952
BstKTI GATC 3 cut(s) 668, 783, 882
BstMAI GTCTC 2 cut(s) 827, 851
BstMBI GATC 3 cut(s) 665, 780, 879
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 3 cut(s) 211, 684, 746
BstNSI RCATGY 2 cut(s) 205, 651
BstPI GGTNACC 1 cut(s) 895
BstSCI CCNGG 1 cut(s) 899
BstSLI GKGCMC 1 cut(s) 694
BstUI CGCG 2 cut(s) 950, 952
BstV1I GCAGC 3 cut(s) 217, 617, 1009
BstV2I GAAGAC 3 cut(s) 337, 845, 911
BstX2I RGATCY 1 cut(s) 879
BstYI RGATCY 1 cut(s) 879
Bsu36I CCTNAGG 1 cut(s) 816
BsuI GTATCC 1 cut(s) 993
BsuRI GGCC 2 cut(s) 120, 960
BtrI CACGTC 1 cut(s) 584
BtsCI GGATG 2 cut(s) 286, 1037
BtsI GCAGTG 2 cut(s) 615, 694
BtsIMutI CAGTG 3 cut(s) 615, 694, 742
Cac8I GCNNGC 2 cut(s) 235, 649
CfoI GCGC 2 cut(s) 444, 952
CseI GACGC 1 cut(s) 941
Csp6I GTAC 4 cut(s) 465, 681, 832, 1039
CviAII CATG 5 cut(s) 84, 202, 276, 648, 778
CviQI GTAC 4 cut(s) 465, 681, 832, 1039
DdeI CTNAG 4 cut(s) 49, 311, 755, 816
DpnI GATC 3 cut(s) 667, 782, 881
DpnII GATC 3 cut(s) 665, 780, 879
DraI TTTAAA 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 191, 336
EarI CTCTTC 2 cut(s) 191, 336
Eco130I CCWWGG 1 cut(s) 352
Eco31I GGTCTC 1 cut(s) 827
Eco57I CTGAAG 2 cut(s) 331, 663
Eco81I CCTNAGG 1 cut(s) 816
Eco88I CYCGRG 2 cut(s) 541, 1026
Eco91I GGTNACC 1 cut(s) 895
EcoNI CCTNNNNNAGG 1 cut(s) 625
EcoO65I GGTNACC 1 cut(s) 895
EcoT14I CCWWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 653
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 5 cut(s) 87, 205, 279, 651, 781
FaiI YATR 8 cut(s) 41, 85, 107, 203, 277, 649, 747, 779
FaqI GGGAC 1 cut(s) 104
FatI CATG 5 cut(s) 83, 201, 275, 647, 777
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 3 cut(s) 206, 606, 1023
FokI GGATG 2 cut(s) 293, 1044
Fsp4HI GCNGC 3 cut(s) 206, 606, 1023
FspBI CTAG 2 cut(s) 741, 930
GlaI GCGC 2 cut(s) 443, 951
GluI GCNGC 3 cut(s) 206, 606, 1023
HaeIII GGCC 2 cut(s) 120, 960
HapII CCGG 2 cut(s) 222, 900
HgaI GACGC 1 cut(s) 941
HhaI GCGC 2 cut(s) 444, 952
Hin1II CATG 5 cut(s) 87, 205, 279, 651, 781
Hin6I GCGC 2 cut(s) 442, 950
HinP1I GCGC 2 cut(s) 442, 950
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 7 cut(s) 167, 433, 494, 810, 874, 926, 965
HpaII CCGG 2 cut(s) 222, 900
HphI GGTGA 2 cut(s) 235, 904
Hpy166II GTNNAC 4 cut(s) 273, 615, 805, 834
Hpy188I TCNGA 2 cut(s) 265, 879
Hpy188III TCNNGA 5 cut(s) 430, 484, 550, 663, 969
Hpy8I GTNNAC 4 cut(s) 273, 615, 805, 834
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 968
HpyCH4III ACNGT 5 cut(s) 95, 241, 737, 831, 895
HpyCH4IV ACGT 1 cut(s) 583
HpyCH4V TGCA 6 cut(s) 205, 605, 651, 749, 766, 795
HpyF10VI GCNNNNNNNGC 3 cut(s) 211, 684, 746
HpyF3I CTNAG 4 cut(s) 49, 311, 755, 816
HpySE526I ACGT 1 cut(s) 583
Hsp92II CATG 5 cut(s) 87, 205, 279, 651, 781
HspAI GCGC 2 cut(s) 442, 950
Kzo9I GATC 3 cut(s) 665, 780, 879
LmnI GCTCC 1 cut(s) 613
Lsp1109I GCAGC 3 cut(s) 217, 617, 1009
LweI GCATC 1 cut(s) 991
MaeI CTAG 2 cut(s) 741, 930
MaeII ACGT 1 cut(s) 583
MaeIII GTNAC 3 cut(s) 79, 241, 895
MalI GATC 3 cut(s) 667, 782, 881
MboI GATC 3 cut(s) 665, 780, 879
MboII GAAGA 7 cut(s) 178, 323, 337, 663, 850, 883, 916
MflI RGATCY 1 cut(s) 879
MhlI GDGCHC 1 cut(s) 694
MluCI AATT 5 cut(s) 27, 377, 631, 728, 787
MlyI GAGTC 1 cut(s) 503
Mph1103I ATGCAT 1 cut(s) 653
MseI TTAA 1 cut(s) 257
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 2 cut(s) 222, 900
MspR9I CCNGG 1 cut(s) 901
Mva1269I GAATGC 2 cut(s) 559, 607
MvnI CGCG 2 cut(s) 950, 952
MwoI GCNNNNNNNGC 3 cut(s) 211, 684, 746
NciI CCSGG 1 cut(s) 901
NdeII GATC 3 cut(s) 665, 780, 879
NlaIII CATG 5 cut(s) 87, 205, 279, 651, 781
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 653
NspI RCATGY 2 cut(s) 205, 651
PaeI GCATGC 1 cut(s) 651
PaeR7I CTCGAG 2 cut(s) 541, 1026
PctI GAATGC 2 cut(s) 559, 607
PfeI GAWTC 6 cut(s) 167, 433, 810, 874, 926, 965
PflMI CCANNNNNTGG 1 cut(s) 429
PkrI GCNGC 3 cut(s) 207, 607, 1024
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PspEI GGTNACC 1 cut(s) 895
PspN4I GGNNCC 1 cut(s) 238
PspXI VCTCGAGB 2 cut(s) 541, 1026
PsuI RGATCY 1 cut(s) 879
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 4 cut(s) 466, 682, 833, 1040
RsaNI GTAC 4 cut(s) 465, 681, 832, 1039
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 3 cut(s) 206, 606, 1023
Sau3AI GATC 3 cut(s) 665, 780, 879
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 1 cut(s) 901
SduI GDGCHC 1 cut(s) 694
SfaNI GCATC 1 cut(s) 991
Sfr274I CTCGAG 2 cut(s) 541, 1026
SlaI CTCGAG 2 cut(s) 541, 1026
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 5 cut(s) 209, 541, 866, 917, 1026
SmoI CTYRAG 5 cut(s) 209, 541, 866, 917, 1026
SphI GCATGC 1 cut(s) 651
Sse9I AATT 5 cut(s) 27, 377, 631, 728, 787
SsiI CCGC 2 cut(s) 246, 678
SspMI CTAG 2 cut(s) 741, 930
StyD4I CCNGG 1 cut(s) 899
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 5 cut(s) 95, 241, 737, 831, 895
TaiI ACGT 1 cut(s) 586
TaqI TCGA 9 cut(s) 97, 141, 294, 393, 497, 542, 701, 942, 1027
TasI AATT 5 cut(s) 27, 377, 631, 728, 787
TatI WGTACW 1 cut(s) 464
TfiI GAWTC 6 cut(s) 167, 433, 810, 874, 926, 965
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TscAI CASTG 3 cut(s) 622, 694, 742
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 3 cut(s) 205, 605, 1022
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 1001
TspGWI ACGGA 2 cut(s) 600, 608
TspRI CASTG 3 cut(s) 622, 694, 742
Van91I CCANNNNNTGG 1 cut(s) 429
XagI CCTNNNNNAGG 1 cut(s) 625
XapI RAATTY 1 cut(s) 631
XceI RCATGY 2 cut(s) 205, 651
XhoI CTCGAG 2 cut(s) 541, 1026
XmiI GTMKAC 1 cut(s) 272
XspI CTAG 2 cut(s) 741, 930
ZrmI AGTACT 1 cut(s) 466
Zsp2I ATGCAT 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.