Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000460

Physical Location & Seq

Genomic Coordinates Reverse (-)

23304782 .. 23306440

Gene Structure 1659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGACCGGTCCACTTTCATCTTATCTCTACTCTTCACACTCACTGTCTCGACTACGACCCTCTTCTCTCCGGTTTTCGCAGGAACGTTCGACACAGAATTCGATATCACTTGGGGTGATGGTCGTGGCAAGGTTCTTAACAACGGAGAGCTTCTCACTCTCTCCCTCGACAGAGCCTCCGGCTCTGGTTTTCAAACCAAGAAAGAGTATTTGTTCGGGAAAATCGACATGCAGCTCAAACTCGTCCCTGGAAACTCCGCCGGAACCGTCACTGCCTACTACTTGAAGTCAAAAGGTGATACGTGGGACGAAATCGATTTCGAGTTTCTTGGTAATCTAACTGGTGATCCGTATACCATGCATACGAATGTGTATACTCAAGGCAAAGGTGATAGAGAACAACAATTTCATCTCTGGTTCGATCCAACCGCTGATTTCCACACTTACTCTGTTTTATGGAACCCTCATCACATCGTTTTCATGGTTGATGATATTCCGGTAAGAGAATTCAAGAATCTACAACATATGGGTATCCAGTATCCAAAATTGCAGCCGATGAGGTTATACTCGAGTCTATGGAACGCGGACCAGTGGGCTACAAGGGGAGGTCTCGTTAAGACTGACTGGTCCAAGGCACCATTCACCGCTTCTTACAGAAACTTTAGAGCGGATGCATGTGTTTCCTCGGGCGGAAGATCATCTTGTCCTGCCGGTTCACCTAGATGGTTCTCTCAAAGGCTTGATCTAACAGCGGAAGATAAGATGAGAGTGGTGCAGAGGAAGTACATGATCTATAACTATTGTACGGACACCAAAAGGTTTCCTCAAGGATTTCCAAAGGAGTGTAGACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0008283 GO:0009266 GO:0009408 GO:0009409 GO:0009505 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009827 GO:0009828 GO:0009832 GO:0009987 GO:0010033 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0032870 GO:0033993 GO:0042221 GO:0042545 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

284

Amino Acids

32.57

Weight (kDa)

8.25

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	31 - 211	2.7e-68	Glycosyl hydrolases family 16
XET_C	PF06955	240 - 282	1.1e-19	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca	FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica	MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica	Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis	pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis	RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata	RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora	Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii	Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa	Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha	Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana	Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	625
AccB1I	GGYRCC	1 cut(s)	634
AccBSI	CCGCTC	1 cut(s)	668
AccI	GTMKAC	3 cut(s)	353, 374, 847
AccII	CGCG	1 cut(s)	584
AciI	CCGC	7 cut(s)	258, 429, 584, 645, 668, 690, 752
AclI	AACGTT	1 cut(s)	86
AclWI	GGATC	2 cut(s)	341, 416
AcsI	RAATTY	2 cut(s)	98, 506
AfaI	GTAC	2 cut(s)	785, 805
AgeI	ACCGGT	1 cut(s)	6
AgsI	TTSAA	3 cut(s)	194, 286, 511
AjnI	CCWGG	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	2 cut(s)	151, 235
AluI	AGCT	2 cut(s)	151, 235
Alw26I	GTCTC	2 cut(s)	52, 614
AlwI	GGATC	2 cut(s)	341, 416
Ama87I	CYCGRG	2 cut(s)	568, 685
ApeKI	GCWGC	2 cut(s)	232, 550
ApoI	RAATTY	2 cut(s)	98, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AsiGI	ACCGGT	1 cut(s)	6
AspS9I	GGNCC	4 cut(s)	4, 9, 586, 627
AsuHPI	GGTGA	6 cut(s)	128, 308, 356, 401, 634, 708
AvaI	CYCGRG	2 cut(s)	568, 685
AvaII	GGWCC	4 cut(s)	4, 9, 586, 627
BanI	GGYRCC	1 cut(s)	634
BbvI	GCAGC	2 cut(s)	244, 562
BccI	CCATC	2 cut(s)	113, 717
BciT130I	CCWGG	1 cut(s)	249
BciVI	GTATCC	2 cut(s)	542, 549
BcoDI	GTCTC	2 cut(s)	52, 614
BfaI	CTAG	2 cut(s)	720, 853
BfuI	GTATCC	2 cut(s)	542, 549
BisI	GCNGC	2 cut(s)	233, 551
BlsI	GCNGC	2 cut(s)	234, 552
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	4 cut(s)	4, 9, 586, 627
BmeT110I	CYCGRG	2 cut(s)	568, 685
BmgT120I	GGNCC	4 cut(s)	4, 9, 586, 627
BmiI	GGNNCC	3 cut(s)	265, 461, 636
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	1 cut(s)	661
BplI	GAGNNNNNCTC	2 cut(s)	138, 170
BpuEI	CTTGAG	2 cut(s)	363, 810
Bsa29I	ATCGAT	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	614
BsaJI	CCNNGG	3 cut(s)	247, 630, 684
BsaWI	WCCGGW	3 cut(s)	6, 70, 496
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 597, 627
Bse118I	RCCGGY	2 cut(s)	6, 710
Bse1I	ACTGG	4 cut(s)	346, 535, 589, 629
BseBI	CCWGG	1 cut(s)	249
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	247, 630, 684
BseGI	GGATG	1 cut(s)	676
BseNI	ACTGG	4 cut(s)	346, 535, 589, 629
BseXI	GCAGC	2 cut(s)	244, 562
BsgI	GTGCAG	1 cut(s)	794
Bsh1236I	CGCG	1 cut(s)	584
BshNI	GGYRCC	1 cut(s)	634
BshTI	ACCGGT	1 cut(s)	6
BshVI	ATCGAT	1 cut(s)	315
BsiHKCI	CYCGRG	2 cut(s)	568, 685
BsiSI	CCGG	6 cut(s)	7, 71, 180, 261, 497, 711
BslFI	GGGAC	2 cut(s)	230, 320
BsmAI	GTCTC	2 cut(s)	52, 614
BsmFI	GGGAC	2 cut(s)	230, 320
Bso31I	GGTCTC	1 cut(s)	614
BsoBI	CYCGRG	2 cut(s)	568, 685
Bsp143I	GATC	5 cut(s)	346, 421, 695, 742, 789
BspACI	CCGC	7 cut(s)	258, 429, 584, 645, 668, 690, 752
BspDI	ATCGAT	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	584
BspLI	GGNNCC	3 cut(s)	265, 461, 636
BspPI	GGATC	2 cut(s)	341, 416
BspT107I	GGYRCC	1 cut(s)	634
BspTNI	GGTCTC	1 cut(s)	614
BsrBI	CCGCTC	1 cut(s)	668
BsrFI	RCCGGY	2 cut(s)	6, 710
BsrI	ACTGG	4 cut(s)	346, 535, 589, 629
BssAI	RCCGGY	2 cut(s)	6, 710
BssECI	CCNNGG	3 cut(s)	247, 630, 684
BssMI	GATC	5 cut(s)	346, 421, 695, 742, 789
BssNAI	GTATAC	2 cut(s)	354, 375
BssT1I	CCWWGG	1 cut(s)	630
Bst1107I	GTATAC	2 cut(s)	354, 375
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	46, 268
Bst6I	CTCTTC	2 cut(s)	38, 68
BstBAI	YACGTR	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	1 cut(s)	584
BstKTI	GATC	5 cut(s)	349, 424, 698, 745, 792
BstMAI	GTCTC	2 cut(s)	52, 614
BstMBI	GATC	5 cut(s)	346, 421, 695, 742, 789
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	2 cut(s)	232, 678
BstSCI	CCNGG	1 cut(s)	247
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	2 cut(s)	244, 562
BstZ17I	GTATAC	2 cut(s)	354, 375
Bsu15I	ATCGAT	1 cut(s)	315
BsuI	GTATCC	2 cut(s)	542, 549
BsuTUI	ATCGAT	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	676
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	3 cut(s)	42, 270, 596
Cfr10I	RCCGGY	2 cut(s)	6, 710
Cfr13I	GGNCC	4 cut(s)	4, 9, 586, 627
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	784, 804
CspAI	ACCGGT	1 cut(s)	6
CviAII	CATG	5 cut(s)	229, 358, 481, 675, 787
CviJI	RGCY	7 cut(s)	151, 176, 183, 235, 553, 596, 739
CviKI_1	RGCY	7 cut(s)	151, 176, 183, 235, 553, 596, 739
CviQI	GTAC	2 cut(s)	784, 804
DpnI	GATC	5 cut(s)	348, 423, 697, 744, 791
DpnII	GATC	5 cut(s)	346, 421, 695, 742, 789
DrdI	GACNNNNNNGTC	1 cut(s)	625
DseDI	GACNNNNNNGTC	1 cut(s)	625
Eam1104I	CTCTTC	2 cut(s)	38, 68
EarI	CTCTTC	2 cut(s)	38, 68
EciI	GGCGGA	2 cut(s)	247, 705
Eco130I	CCWWGG	1 cut(s)	630
Eco31I	GGTCTC	1 cut(s)	614
Eco32I	GATATC	1 cut(s)	106
Eco47I	GGWCC	4 cut(s)	4, 9, 586, 627
Eco88I	CYCGRG	2 cut(s)	568, 685
EcoRI	GAATTC	2 cut(s)	98, 506
EcoRII	CCWGG	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	630
EcoT22I	ATGCAT	2 cut(s)	363, 676
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	5 cut(s)	232, 361, 484, 678, 790
FalI	AAGNNNNNCTT	2 cut(s)	685, 717
FaqI	GGGAC	2 cut(s)	230, 320
FatI	CATG	5 cut(s)	228, 357, 480, 674, 786
FauNDI	CATATG	1 cut(s)	525
FblI	GTMKAC	3 cut(s)	353, 374, 847
Fnu4HI	GCNGC	2 cut(s)	233, 551
FokI	GGATG	1 cut(s)	683
Fsp4HI	GCNGC	2 cut(s)	233, 551
FspBI	CTAG	2 cut(s)	720, 853
GluI	GCNGC	2 cut(s)	233, 551
HapII	CCGG	6 cut(s)	7, 71, 180, 261, 497, 711
Hin1II	CATG	5 cut(s)	232, 361, 484, 678, 790
HinfI	GANTC	2 cut(s)	514, 571
HpaII	CCGG	6 cut(s)	7, 71, 180, 261, 497, 711
HphI	GGTGA	6 cut(s)	128, 308, 356, 401, 634, 708
Hpy166II	GTNNAC	5 cut(s)	12, 354, 375, 716, 848
Hpy188III	TCNNGA	3 cut(s)	49, 217, 511
Hpy8I	GTNNAC	5 cut(s)	12, 354, 375, 716, 848
HpyCH4III	ACNGT	2 cut(s)	46, 268
HpyCH4IV	ACGT	2 cut(s)	86, 302
HpyCH4V	TGCA	5 cut(s)	232, 361, 550, 674, 775
HpySE526I	ACGT	2 cut(s)	86, 302
Hsp92II	CATG	5 cut(s)	232, 361, 484, 678, 790
Kzo9I	GATC	5 cut(s)	346, 421, 695, 742, 789
Lsp1109I	GCAGC	2 cut(s)	244, 562
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	2 cut(s)	720, 853
MaeII	ACGT	2 cut(s)	86, 302
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	5 cut(s)	348, 423, 697, 744, 791
MbiI	CCGCTC	1 cut(s)	668
MboI	GATC	5 cut(s)	346, 421, 695, 742, 789
MboII	GAAGA	4 cut(s)	25, 55, 705, 767
MluCI	AATT	4 cut(s)	98, 404, 506, 545
MlyI	GAGTC	1 cut(s)	580
MmeI	TCCRAC	1 cut(s)	449
MnlI	CCTC	9 cut(s)	71, 176, 187, 474, 552, 599, 694, 771, 834
Mph1103I	ATGCAT	2 cut(s)	363, 676
MseI	TTAA	2 cut(s)	138, 615
MslI	CAYNNNNRTG	2 cut(s)	366, 721
MspA1I	CMGCKG	2 cut(s)	431, 752
MspI	CCGG	6 cut(s)	7, 71, 180, 261, 497, 711
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
MvnI	CGCG	1 cut(s)	584
NdeI	CATATG	1 cut(s)	525
NdeII	GATC	5 cut(s)	346, 421, 695, 742, 789
NlaIII	CATG	5 cut(s)	232, 361, 484, 678, 790
NlaIV	GGNNCC	3 cut(s)	265, 461, 636
NmuCI	GTSAC	1 cut(s)	268
NsiI	ATGCAT	2 cut(s)	363, 676
NspI	RCATGY	2 cut(s)	232, 678
PaeR7I	CTCGAG	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	514
PinAI	ACCGGT	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	234, 552
PleI	GAGTC	1 cut(s)	579
PpsI	GAGTC	1 cut(s)	579
Ppu21I	YACGTR	1 cut(s)	303
Psp1406I	AACGTT	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	3 cut(s)	265, 461, 636
PspPI	GGNCC	4 cut(s)	4, 9, 586, 627
PspXI	VCTCGAGB	1 cut(s)	568
RsaI	GTAC	2 cut(s)	785, 805
RsaNI	GTAC	2 cut(s)	784, 804
RseI	CAYNNNNRTG	2 cut(s)	366, 721
SaqAI	TTAA	2 cut(s)	138, 615
SatI	GCNGC	2 cut(s)	233, 551
Sau3AI	GATC	5 cut(s)	346, 421, 695, 742, 789
Sau96I	GGNCC	4 cut(s)	4, 9, 586, 627
SchI	GAGTC	1 cut(s)	580
ScrFI	CCNGG	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	661
Sfr274I	CTCGAG	1 cut(s)	568
SinI	GGWCC	4 cut(s)	4, 9, 586, 627
SlaI	CTCGAG	1 cut(s)	568
SmiMI	CAYNNNNRTG	2 cut(s)	366, 721
SmlI	CTYRAG	3 cut(s)	378, 568, 825
SmoI	CTYRAG	3 cut(s)	378, 568, 825
Sse9I	AATT	4 cut(s)	98, 404, 506, 545
SsiI	CCGC	7 cut(s)	258, 429, 584, 645, 668, 690, 752
SspMI	CTAG	2 cut(s)	720, 853
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	2 cut(s)	46, 268
TaiI	ACGT	2 cut(s)	89, 305
TaqI	TCGA	9 cut(s)	50, 90, 102, 168, 225, 315, 321, 420, 569
TasI	AATT	4 cut(s)	98, 404, 506, 545
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	2 cut(s)	138, 615
Tru9I	TTAA	2 cut(s)	138, 615
TscAI	CASTG	3 cut(s)	49, 277, 596
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	232, 550
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	3 cut(s)	7, 398, 469
TspGWI	ACGGA	3 cut(s)	159, 339, 821
TspRI	CASTG	3 cut(s)	49, 277, 596
VpaK11BI	GGWCC	4 cut(s)	4, 9, 586, 627
XapI	RAATTY	2 cut(s)	98, 506
XceI	RCATGY	2 cut(s)	232, 678
XhoI	CTCGAG	1 cut(s)	568
XmiI	GTMKAC	3 cut(s)	353, 374, 847
XspI	CTAG	2 cut(s)	720, 853
Zsp2I	ATGCAT	2 cut(s)	363, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.