Prupe.1G088800_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
6641453 .. 6643084
1632 bp
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UTR
Exon/CDS
Intron
Prupe.1G088800.1

Sequence Viewer

Length: 855 bp
ATGTTGTTAATGTTGCTATTGGTTAGTTCCATTTTGGTTTGCTATGCTGGAAACTTGAACGGAGATTTCGACATTACATGGGGAGATGGCCGTGGAAAAATACTCAACAACGGTCAGCTCCTAACCTTGTCACTCGACAGAGCCTCTGGCTCAGGCTTCCAATCCAAGCACGAGTATCTCTTTGGAAAAATTGACATGCAGATCAAGCTTGTCCCTGGAAACTCTGCTGGCACTGTCACTACCTACTATCTATCATCAAAAAGGTCAACATGGGATGAGATTGATTTGGAGTTCTTGGGGAATCTGAGCGGTGATCCTTACATTCTTCACACCAATATATATACCCAAGGCAAAGGCGATAGAGAGCAACAATTCTACCTCTGGTTCGACCCCACCTCTAATTTTCATACCTACTCTATCCTCTGGAATCCCCAACGCATCATATTATCTGTTGATGGCACACCCATTAGAGAGTTCAAGAACCTAGAGGCATCCATTGGAGTTCCTTTCCCAAAGAGCCAACCAATGAGGATTTTCTCTAGCCTCTGGAATGCTGATGACTGGGCAACAAGAGGAGGGCTGGTCAAGACAGATTGGTCACAAGCTCCATTCACAGCCTCCTATCAAAACTTCAACGCCAATGCTTGCGTATGGTCTTCTGGTGCATCTTCTTGTAGCTCATCATCATCTTCGACGTCAAGACCTACCAGTAAATCGTGGCTCAAAGAAGTTCTTGATACCTCAAAGCAAGAGAGGCTCAAGTGGGTCCAAAAGAATTACATGATCTATAACTATTGTATAGATATAAAGCGCTTCCCACAAGGCCTCCCTCCTGAATGTAGAATAAAACTCTAG

Protein Analysis

285

Amino Acids

32.1

Weight (kDa)

8.49

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 595
AatII GACGTC 1 cut(s) 698
AccBSI CCGCTC 1 cut(s) 309
AciI CCGC 1 cut(s) 309
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 695
AfeI AGCGCT 1 cut(s) 812
AgsI TTSAA 3 cut(s) 58, 478, 634
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 4 cut(s) 118, 208, 605, 678
AluI AGCT 4 cut(s) 118, 208, 605, 678
AlwI GGATC 1 cut(s) 308
Aor51HI AGCGCT 1 cut(s) 812
AoxI GGCC 2 cut(s) 88, 823
AspLEI GCGC 1 cut(s) 813
AspS9I GGNCC 1 cut(s) 766
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 1 cut(s) 766
BauI CACGAG 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 648
BccI CCATC 2 cut(s) 80, 449
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 216
BfaI CTAG 3 cut(s) 485, 540, 853
BfoI RGCGCY 1 cut(s) 814
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 766
BmgT120I GGNCC 1 cut(s) 766
BmiI GGNNCC 1 cut(s) 767
BmrFI CCNGG 1 cut(s) 216
BmrI ACTGGG 1 cut(s) 571
BmsI GCATC 3 cut(s) 447, 500, 674
BmuI ACTGGG 1 cut(s) 571
BpiI GAAGAC 1 cut(s) 648
Bpu10I CCTNAGC 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 743
BsaHI GRCGYC 1 cut(s) 695
BsaJI CCNNGG 3 cut(s) 91, 214, 346
BsaXI ACNNNNNCTCC 4 cut(s) 567, 597, 810, 840
Bse1I ACTGG 2 cut(s) 566, 708
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 3 cut(s) 91, 214, 346
BseGI GGATG 2 cut(s) 280, 491
BseMII CTCAG 2 cut(s) 165, 296
BseNI ACTGG 2 cut(s) 566, 708
BseRI GAGGAG 1 cut(s) 588
BshFI GGCC 2 cut(s) 90, 825
BslFI GGGAC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 2 cut(s) 90, 825
Bsp143I GATC 3 cut(s) 201, 313, 783
BspACI CCGC 1 cut(s) 309
BspANI GGCC 2 cut(s) 90, 825
BspCNI CTCAG 2 cut(s) 164, 297
BspLI GGNNCC 1 cut(s) 767
BspPI GGATC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 309
BsrI ACTGG 2 cut(s) 566, 708
BssECI CCNNGG 3 cut(s) 91, 214, 346
BssMI GATC 3 cut(s) 201, 313, 783
BssNI GRCGYC 1 cut(s) 695
BssSI CACGAG 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 346
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 113, 235
BstACI GRCGYC 1 cut(s) 695
BstC8I GCNNGC 2 cut(s) 229, 646
BstDEI CTNAG 2 cut(s) 151, 305
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 2 cut(s) 280, 491
BstH2I RGCGCY 1 cut(s) 814
BstHHI GCGC 1 cut(s) 813
BstKTI GATC 3 cut(s) 204, 316, 786
BstMBI GATC 3 cut(s) 201, 313, 783
BstMWI GCNNNNNNNGC 2 cut(s) 205, 754
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 648
BsuRI GGCC 2 cut(s) 90, 825
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 2 cut(s) 280, 491
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 229, 646
CfoI GCGC 1 cut(s) 813
Cfr13I GGNCC 1 cut(s) 766
CviAII CATG 4 cut(s) 78, 196, 270, 781
DdeI CTNAG 2 cut(s) 151, 305
DpnI GATC 3 cut(s) 203, 315, 785
DpnII GATC 3 cut(s) 201, 313, 783
DrdI GACNNNNNNGTC 1 cut(s) 595
DseDI GACNNNNNNGTC 1 cut(s) 595
EaeI YGGCCR 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 346
Eco147I AGGCCT 1 cut(s) 825
Eco47I GGWCC 1 cut(s) 766
Eco47III AGCGCT 1 cut(s) 812
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 4 cut(s) 81, 199, 273, 784
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FaqI GGGAC 1 cut(s) 197
FatI CATG 4 cut(s) 77, 195, 269, 780
FokI GGATG 2 cut(s) 287, 478
FspBI CTAG 3 cut(s) 485, 540, 853
GlaI GCGC 1 cut(s) 812
HaeII RGCGCY 1 cut(s) 814
HaeIII GGCC 2 cut(s) 90, 825
HhaI GCGC 1 cut(s) 813
Hin1I GRCGYC 1 cut(s) 695
Hin1II CATG 4 cut(s) 81, 199, 273, 784
Hin6I GCGC 1 cut(s) 811
HinP1I GCGC 1 cut(s) 811
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 2 cut(s) 301, 427
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 7 cut(s) 424, 478, 547, 586, 699, 734, 833
Hpy8I GTNNAC 1 cut(s) 267
Hpy99I CGWCG 1 cut(s) 697
HpyCH4III ACNGT 2 cut(s) 113, 235
HpyCH4IV ACGT 1 cut(s) 695
HpyCH4V TGCA 2 cut(s) 199, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 754
HpyF3I CTNAG 2 cut(s) 151, 305
HpySE526I ACGT 1 cut(s) 695
Hsp92I GRCGYC 1 cut(s) 695
Hsp92II CATG 4 cut(s) 81, 199, 273, 784
HspAI GCGC 1 cut(s) 811
Kzo9I GATC 3 cut(s) 201, 313, 783
LmnI GCTCC 2 cut(s) 123, 610
LweI GCATC 3 cut(s) 447, 500, 674
MaeI CTAG 3 cut(s) 485, 540, 853
MaeII ACGT 1 cut(s) 695
MaeIII GTNAC 3 cut(s) 129, 235, 597
MalI GATC 3 cut(s) 203, 315, 785
MbiI CCGCTC 1 cut(s) 309
MboI GATC 3 cut(s) 201, 313, 783
MboII GAAGA 4 cut(s) 317, 648, 660, 681
MluCI AATT 4 cut(s) 189, 371, 400, 775
MseI TTAA 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 216
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 205, 754
NdeII GATC 3 cut(s) 201, 313, 783
NlaIII CATG 4 cut(s) 81, 199, 273, 784
NlaIV GGNNCC 1 cut(s) 767
NmuCI GTSAC 3 cut(s) 129, 235, 597
NspI RCATGY 1 cut(s) 199
PceI AGGCCT 1 cut(s) 825
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 1 cut(s) 556
PfeI GAWTC 2 cut(s) 301, 427
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 767
PspPI GGNCC 1 cut(s) 766
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 3 cut(s) 201, 313, 783
Sau96I GGNCC 1 cut(s) 766
ScrFI CCNGG 1 cut(s) 216
SfaNI GCATC 3 cut(s) 447, 500, 674
SinI GGWCC 1 cut(s) 766
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
Sse9I AATT 4 cut(s) 189, 371, 400, 775
SseBI AGGCCT 1 cut(s) 825
SsiI CCGC 1 cut(s) 309
SspMI CTAG 3 cut(s) 485, 540, 853
StuI AGGCCT 1 cut(s) 825
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 2 cut(s) 113, 235
TaiI ACGT 1 cut(s) 698
TaqI TCGA 4 cut(s) 69, 135, 387, 692
TasI AATT 4 cut(s) 189, 371, 400, 775
TfiI GAWTC 2 cut(s) 301, 427
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 3 cut(s) 129, 235, 597
Tsp45I GTSAC 3 cut(s) 129, 235, 597
TspDTI ATGAA 1 cut(s) 395
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 766
XceI RCATGY 1 cut(s) 199
XspI CTAG 3 cut(s) 485, 540, 853
ZraI GACGTC 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.