Rh4BG109300

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
18539201 .. 18540675
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG109300.1

Sequence Viewer

Length: 888 bp
ATGGCTTCTTTCAAATCTGCTCTTTCACTGATGCTGCTTGCTGTACCTCTTCTTGTTATGGTTGCCTCTGCGGGTAACTTCAACCAGGACTTTCAAATTACATGGGGAGATGGCCGAGCCAAGATACTCAACAATGGCCAACTTCTTACTCTCACGCTCGACAAAGCCTCTGGCTCTGGTTTCGAATCCAAAAATGAATATCTCTTCGGCAAAATCGATATGCAGCTCAAGCTTGTTGCTGGGAACTCTGCTGGAACTGTCACCGCCTACTATTTACGCTCAGAAGGATCATTATGGGATGAGATAGGCTTTGAGTTCTTGGGAAACCTGAGTGGTGACCCTTACATTCTTCACACCAATGTGTTCACCCAAGGCAAAGGAAACAGAGAGCAACAATTCTATCTCTGGTTCGACCCAACTGCTGATTTCCACACCTATTCCATTCTCTGGAATCCACAGCGCATTGTTTTCTCTGTGGATGGAACTCCCATTAGAGAGTTCAAGAACATGGAATCAATTGGCGTTCCATTCCCAAAGAACCAGCCAATGAGATTAACCTCTAGTCTCTGGAATGCTGATGATTGGGCAACAAGGGGAGGGCTTGTGAAGACAGATTGGAGCAAAGCTCCTTTCACTGCTTCCTACAGGAACTTCAATGCCGACAAGGCTTGTATTTGGTCAAGGACTAAAAAAACATCTTCGTGCAGCTCGTCATCGTCATCGTCATCGTCAAGTTCTAAAATACCTGGTAATGAATGGCTCACAGAAGATCTCGACACAACGAAGCAGGAGAGGCTGAGATGGGTGCAGAAGAACTACATGATCTATAATTACTGCTCTGATATTAAGAGATTTCCCCAGGGACTCCCTACTGAATGCAAGTCGTAA

Protein Analysis

295

Amino Acids

33.2

Weight (kDa)

8.55

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 27 - 208 5.9e-65 Glycosyl hydrolases family 16
XET_C PF06955 251 - 293 1.6e-20 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 447
AciI CCGC 2 cut(s) 71, 264
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 2 cut(s) 112, 136
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 447
AgsI TTSAA 5 cut(s) 13, 82, 95, 502, 655
AjnI CCWGG 3 cut(s) 84, 745, 858
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 4 cut(s) 226, 232, 626, 708
AluI AGCT 4 cut(s) 226, 232, 626, 708
Alw26I GTCTC 1 cut(s) 569
AlwI GGATC 1 cut(s) 295
AoxI GGCC 2 cut(s) 112, 136
ApeKI GCWGC 3 cut(s) 34, 223, 705
AspLEI GCGC 1 cut(s) 462
AsuHPI GGTGA 3 cut(s) 253, 347, 358
AsuII TTCGAA 1 cut(s) 183
BalI TGGCCA 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 614
BbvI GCAGC 3 cut(s) 21, 235, 717
BccI CCATC 3 cut(s) 104, 473, 795
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 3 cut(s) 86, 747, 860
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 643
BglI GCCNNNNNGGC 1 cut(s) 665
BglII AGATCT 1 cut(s) 769
BisI GCNGC 3 cut(s) 35, 224, 706
BlsI GCNGC 3 cut(s) 36, 225, 707
Bme1390I CCNGG 3 cut(s) 86, 747, 860
BmrFI CCNGG 3 cut(s) 86, 747, 860
BmsI GCATC 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 614
BplI GAGNNNNNCTC 2 cut(s) 610, 642
Bpu14I TTCGAA 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 212
Bsa29I ATCGAT 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 370, 858, 859
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 1 cut(s) 447
BseBI CCWGG 3 cut(s) 86, 747, 860
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 3 cut(s) 370, 858, 859
BseGI GGATG 2 cut(s) 304, 484
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMII CTCAG 3 cut(s) 294, 320, 788
BseXI GCAGC 3 cut(s) 21, 235, 717
BseYI CCCAGC 1 cut(s) 239
BsgI GTGCAG 2 cut(s) 724, 827
BshFI GGCC 2 cut(s) 114, 138
BshVI ATCGAT 1 cut(s) 216
BslFI GGGAC 1 cut(s) 876
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 1 cut(s) 569
BsmFI GGGAC 1 cut(s) 876
BsmI GAATGC 2 cut(s) 577, 881
BsnI GGCC 2 cut(s) 114, 138
Bsp119I TTCGAA 1 cut(s) 183
Bsp143I GATC 3 cut(s) 287, 769, 822
BspACI CCGC 2 cut(s) 71, 264
BspANI GGCC 2 cut(s) 114, 138
BspCNI CTCAG 3 cut(s) 293, 321, 789
BspDI ATCGAT 1 cut(s) 216
BspPI GGATC 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 183
BssECI CCNNGG 3 cut(s) 370, 858, 859
BssMI GATC 3 cut(s) 287, 769, 822
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 3 cut(s) 86, 747, 860
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 2 cut(s) 54, 209
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 280, 329, 797
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 2 cut(s) 304, 484
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 3 cut(s) 290, 772, 825
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 3 cut(s) 287, 769, 822
BstMWI GCNNNNNNNGC 3 cut(s) 229, 665, 793
BstNI CCWGG 3 cut(s) 86, 747, 860
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 3 cut(s) 84, 745, 858
BstSFI CTRYAG 1 cut(s) 643
BstV1I GCAGC 3 cut(s) 21, 235, 717
BstV2I GAAGAC 1 cut(s) 614
BstX2I RGATCY 1 cut(s) 769
BstYI RGATCY 1 cut(s) 769
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 2 cut(s) 114, 138
BsuTUI ATCGAT 1 cut(s) 216
BtsCI GGATG 2 cut(s) 304, 484
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 2 cut(s) 26, 633
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 462
ClaI ATCGAT 1 cut(s) 216
CsiI ACCWGGT 1 cut(s) 745
Csp6I GTAC 1 cut(s) 44
CviAII CATG 3 cut(s) 102, 508, 820
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 3 cut(s) 280, 329, 797
DpnI GATC 3 cut(s) 289, 771, 824
DpnII GATC 3 cut(s) 287, 769, 822
EaeI YGGCCR 2 cut(s) 112, 136
Eam1104I CTCTTC 2 cut(s) 54, 209
EarI CTCTTC 2 cut(s) 54, 209
Eco130I CCWWGG 1 cut(s) 370
Eco91I GGTNACC 1 cut(s) 335
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 84, 745, 858
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 3 cut(s) 105, 511, 823
FaiI YATR 7 cut(s) 59, 103, 221, 295, 509, 821, 828
FaqI GGGAC 1 cut(s) 876
FatI CATG 3 cut(s) 101, 507, 819
FauI CCCGC 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 35, 224, 706
FokI GGATG 2 cut(s) 311, 491
Fsp4HI GCNGC 3 cut(s) 35, 224, 706
FspBI CTAG 1 cut(s) 561
GlaI GCGC 1 cut(s) 461
GluI GCNGC 3 cut(s) 35, 224, 706
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 2 cut(s) 114, 138
HhaI GCGC 1 cut(s) 462
Hin1II CATG 3 cut(s) 105, 511, 823
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 4 cut(s) 185, 451, 512, 864
HphI GGTGA 3 cut(s) 253, 347, 358
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 2 cut(s) 283, 841
Hpy188III TCNNGA 4 cut(s) 448, 502, 568, 773
Hpy8I GTNNAC 1 cut(s) 366
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 4 cut(s) 223, 705, 808, 879
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 665, 793
HpyF3I CTNAG 3 cut(s) 280, 329, 797
Hsp92II CATG 3 cut(s) 105, 511, 823
HspAI GCGC 1 cut(s) 460
Kzo9I GATC 3 cut(s) 287, 769, 822
LmnI GCTCC 2 cut(s) 618, 631
Lsp1109I GCAGC 3 cut(s) 21, 235, 717
LweI GCATC 1 cut(s) 21
MabI ACCWGGT 1 cut(s) 745
MaeI CTAG 1 cut(s) 561
MaeIII GTNAC 3 cut(s) 74, 259, 335
MalI GATC 3 cut(s) 289, 771, 824
MboI GATC 3 cut(s) 287, 769, 822
MboII GAAGA 7 cut(s) 41, 196, 341, 619, 690, 779, 823
MfeI CAATTG 1 cut(s) 516
MflI RGATCY 1 cut(s) 769
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 4 cut(s) 96, 395, 516, 829
MluNI TGGCCA 1 cut(s) 138
MlyI GAGTC 1 cut(s) 858
MnlI CCTC 6 cut(s) 57, 76, 178, 568, 590, 786
Mox20I TGGCCA 1 cut(s) 138
MscI TGGCCA 1 cut(s) 138
MseI TTAA 2 cut(s) 554, 846
MslI CAYNNNNRTG 3 cut(s) 357, 359, 700
Msp20I TGGCCA 1 cut(s) 138
MspR9I CCNGG 3 cut(s) 86, 747, 860
MunI CAATTG 1 cut(s) 516
Mva1269I GAATGC 2 cut(s) 577, 881
MvaI CCWGG 3 cut(s) 86, 747, 860
MwoI GCNNNNNNNGC 3 cut(s) 229, 665, 793
NdeII GATC 3 cut(s) 287, 769, 822
NlaIII CATG 3 cut(s) 105, 511, 823
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 2 cut(s) 259, 335
NspV TTCGAA 1 cut(s) 183
OliI CACNNNNGTG 1 cut(s) 359
PasI CCCWGGG 1 cut(s) 859
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 707
PctI GAATGC 2 cut(s) 577, 881
PfeI GAWTC 3 cut(s) 185, 451, 512
PflMI CCANNNNNTGG 1 cut(s) 447
PkrI GCNGC 3 cut(s) 36, 225, 707
PleI GAGTC 1 cut(s) 858
PpsI GAGTC 1 cut(s) 858
Psp6I CCWGG 3 cut(s) 84, 745, 858
PspEI GGTNACC 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 3 cut(s) 84, 745, 858
PsuI RGATCY 1 cut(s) 769
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 3 cut(s) 357, 359, 700
SaqAI TTAA 2 cut(s) 554, 846
SatI GCNGC 3 cut(s) 35, 224, 706
Sau3AI GATC 3 cut(s) 287, 769, 822
SchI GAGTC 1 cut(s) 858
ScrFI CCNGG 3 cut(s) 86, 747, 860
SetI ASST 9 cut(s) 49, 228, 234, 330, 437, 560, 628, 710, 748
SexAI ACCWGGT 1 cut(s) 745
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 643
SfuI TTCGAA 1 cut(s) 183
SmiMI CAYNNNNRTG 3 cut(s) 357, 359, 700
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 4 cut(s) 96, 395, 516, 829
SsiI CCGC 2 cut(s) 71, 264
SspMI CTAG 1 cut(s) 561
StyD4I CCNGG 3 cut(s) 84, 745, 858
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 5 cut(s) 159, 183, 216, 411, 774
TasI AATT 4 cut(s) 96, 395, 516, 829
TfiI GAWTC 3 cut(s) 185, 451, 512
Tru1I TTAA 2 cut(s) 554, 846
Tru9I TTAA 2 cut(s) 554, 846
TscAI CASTG 2 cut(s) 33, 640
TseFI GTSAC 2 cut(s) 259, 335
TseI GCWGC 3 cut(s) 34, 223, 705
Tsp45I GTSAC 2 cut(s) 259, 335
TspDTI ATGAA 2 cut(s) 210, 768
TspRI CASTG 2 cut(s) 33, 640
Van91I CCANNNNNTGG 1 cut(s) 447
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.