Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Reverse (-)

79869222 .. 79871650

Gene Structure 2429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTGCAGTCACCTCCTCTTCTCTCTTGAGGAACTGTGCAGCAACAACTGTAAGAGCTTTTGTGACTGTGAAAGCCTCCAACCCCAATTTCAGAACTTTCCTTCTTCCTCTTCACTCTCGCAGGTCCCTGTCTCGTGTTAGCGCTACAAACAATGAAGAGGCTGCTGCCAAGGTAGCTGCAGCAAATGCTGACAATATCAACCCACAGGCTCCTGTGCATGTTGTTATCATCCCAAAGAATAGGGATGGGTTAACAGAGCTGGGAAAGGCTGAATCTAGGCATGTGGAAATATTGGGTCAACTTCTGTATGCTGCAAAAAAAGTTGCTGAGAAAGAAGGTATTCTTCACGGGTTTCGTGTGGTTATCAACAATGGTCCAGAGGGATGTCAATCTGTTTATCATCTTCACTTGCATCTCCTTGGTGGGAGACAGATGAAATGGCCACCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

151

Amino Acids

16.32

Weight (kDa)

10.01

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIT	PF01230	66 - 145	1e-18	HIT domain
DcpS_C	PF11969	66 - 142	1.2e-12	Scavenger mRNA decapping enzyme C-term binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	443
AfeI	AGCGCT	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	448
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	3 cut(s)	59, 179, 262
AluI	AGCT	3 cut(s)	59, 179, 262
Alw26I	GTCTC	2 cut(s)	138, 424
Aor51HI	AGCGCT	1 cut(s)	145
AoxI	GGCC	1 cut(s)	443
ApeKI	GCWGC	7 cut(s)	5, 41, 164, 167, 179, 182, 314
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	126, 377
AsuHPI	GGTGA	1 cut(s)	4
AvaII	GGWCC	2 cut(s)	126, 377
BalI	TGGCCA	1 cut(s)	445
BauI	CACGAG	1 cut(s)	135
BbvI	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 301
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	138, 424
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	2 cut(s)	6, 180
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 315
BlsI	GCNGC	7 cut(s)	7, 43, 166, 169, 181, 184, 316
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	2 cut(s)	126, 377
BmgT120I	GGNCC	2 cut(s)	126, 377
BmiI	GGNNCC	2 cut(s)	128, 213
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	49
BsaBI	GATNNNNATC	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	171, 421
Bse8I	GATNNNNATC	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	171, 421
BseGI	GGATG	3 cut(s)	231, 253, 392
BseJI	GATNNNNATC	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 301
BseYI	CCCAGC	1 cut(s)	262
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	445
BslFI	GGGAC	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	138, 424
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	445
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	128, 213
BspMAI	CTGCAG	2 cut(s)	10, 184
BspMI	ACCTGC	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	171, 421
BssSI	CACGAG	1 cut(s)	135
BssT1I	CCWWGG	2 cut(s)	171, 421
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	3 cut(s)	38, 52, 70
Bst6I	CTCTTC	3 cut(s)	25, 117, 153
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	3 cut(s)	231, 253, 392
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstMAI	GTCTC	2 cut(s)	138, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 188
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	2 cut(s)	224, 287
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	2 cut(s)	6, 180
BstV1I	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 301
BsuRI	GGCC	1 cut(s)	445
BtsCI	GGATG	3 cut(s)	231, 253, 392
BveI	ACCTGC	1 cut(s)	114
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	126, 377
CsiI	ACCWGGT	1 cut(s)	448
CviAII	CATG	2 cut(s)	221, 284
CviJI	RGCY	9 cut(s)	5, 59, 77, 164, 179, 212, 262, 272, 445
CviKI_1	RGCY	9 cut(s)	5, 59, 77, 164, 179, 212, 262, 272, 445
DdeI	CTNAG	1 cut(s)	330
EaeI	YGGCCR	1 cut(s)	443
Eam1104I	CTCTTC	3 cut(s)	25, 117, 153
EarI	CTCTTC	3 cut(s)	25, 117, 153
Eco130I	CCWWGG	2 cut(s)	171, 421
Eco47I	GGWCC	2 cut(s)	126, 377
Eco47III	AGCGCT	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	171, 421
ErhI	CCWWGG	2 cut(s)	171, 421
FaeI	CATG	2 cut(s)	224, 287
FaiI	YATR	3 cut(s)	222, 285, 312
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	2 cut(s)	220, 283
Fnu4HI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 315
FokI	GGATG	3 cut(s)	218, 260, 399
Fsp4HI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 315
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 315
GsaI	CCCAGC	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	445
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	224, 287
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	2 cut(s)	255, 302
HindII	GTYRAC	2 cut(s)	255, 302
HinfI	GANTC	1 cut(s)	275
HpaI	GTTAAC	1 cut(s)	255
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	2 cut(s)	255, 302
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	2 cut(s)	28, 380
Hpy8I	GTNNAC	2 cut(s)	255, 302
HpyAV	CCTTC	2 cut(s)	113, 332
HpyCH4III	ACNGT	3 cut(s)	38, 52, 70
HpyCH4V	TGCA	6 cut(s)	8, 41, 182, 220, 317, 415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 188
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	224, 287
HspAI	GCGC	1 cut(s)	144
KspAI	GTTAAC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	7 cut(s)	109, 143, 194, 228, 248, 393, 435
Lsp1109I	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 301
LweI	GCATC	1 cut(s)	424
MabI	ACCWGGT	1 cut(s)	448
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	10, 64
MboII	GAAGA	6 cut(s)	12, 98, 104, 170, 338, 398
MlsI	TGGCCA	1 cut(s)	445
MluCI	AATT	1 cut(s)	88
MluNI	TGGCCA	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	7 cut(s)	24, 25, 28, 88, 120, 154, 376
Mox20I	TGGCCA	1 cut(s)	445
MroXI	GAANNNNTTC	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	445
MseI	TTAA	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	176, 188
NlaIII	CATG	2 cut(s)	224, 287
NlaIV	GGNNCC	2 cut(s)	128, 213
NmuCI	GTSAC	2 cut(s)	10, 64
NspI	RCATGY	2 cut(s)	224, 287
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	7 cut(s)	7, 43, 166, 169, 181, 184, 316
PpuMI	RGGWCCY	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	128, 213
PspPI	GGNCC	2 cut(s)	126, 377
PspPPI	RGGWCCY	1 cut(s)	126
PstI	CTGCAG	2 cut(s)	10, 184
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 315
Sau96I	GGNCC	2 cut(s)	126, 377
ScrFI	CCNGG	1 cut(s)	450
SetI	ASST	8 cut(s)	17, 61, 128, 177, 181, 264, 343, 451
SexAI	ACCWGGT	1 cut(s)	448
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	2 cut(s)	6, 180
SinI	GGWCC	2 cut(s)	126, 377
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	1 cut(s)	88
SspI	AATATT	1 cut(s)	294
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	2 cut(s)	171, 421
TaaI	ACNGT	3 cut(s)	38, 52, 70
TasI	AATT	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseFI	GTSAC	2 cut(s)	10, 64
TseI	GCWGC	7 cut(s)	5, 41, 164, 167, 179, 182, 314
Tsp45I	GTSAC	2 cut(s)	10, 64
TspDTI	ATGAA	2 cut(s)	171, 452
VpaK11BI	GGWCC	2 cut(s)	126, 377
XceI	RCATGY	2 cut(s)	224, 287
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.