Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Reverse (-)

21057104 .. 21065759

Gene Structure 8656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG191100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCTGCAGTCACCTCCTCTTCTCTCTTGAGGAACTGTGCAGCAACAACTGCGAGAACTTTTGTGACTGTGAAAGCCTCCAACCCCAATTGCAGAACTTTCCTTCTTCCTCTTCACTCTCGCAGGTCCCTGTGGCGTGTTAGTGCTACAAACAATGAAGAGGCTGCTGCCAAGGTAGCTGCAGCAAATGCTGACAGAGGAGTTCCAACAATATTTGACAAGATCATAGCAAAGGAAATCCCATCGACCATTGTATATGAGGATGATAAGGTCCTGGCATTTCGGGATATCAACCCACAGGCTCCTGTGCATGTTGTTATCATCCTAAAGAATAGGGATGGGTTAACAGAGCTGGGAAAGCAGTTGATCCTCAAAGATCAAAATCATCCCACTGCCTTAATCAATTATCCTCCCCTTCTTTTATGTCGATATGGTCCAGTTGTTGCAGTCAATTTTTGTAGAGTGCTGCTTCATCATCATAATACTCTGAAGTTCCAGCAAGTGCTTGGAGAAGGCGACAAAATTAGAGCTCATTGGATGCAGAATGGTATCAGGATCCCACTGAACAACTTTCCTGGCAGGAAGTCGAATGGCTTCAGTTATAAGAGACGGAGACTCTTTCTGTTCAACTTCACATACCATGGCCAGGCTTTGCAATGGTCCACAAAGCCCAACATGAGATTTCAGCAACATTTGATGGTAATCACAAAAAAGCTATTAAGATGCTGCTCAAATGAGTTGCCAAACGAGCTATTTCCCGCCGCCAAGGATGCAAGTGAATATGTAATGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

264

Amino Acids

29.89

Weight (kDa)

9.96

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	70 - 111	1.7e-09	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	78 - 111	8.5e-09	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	603
Acc36I	ACCTGC	1 cut(s)	114
AciI	CCGC	2 cut(s)	759, 762
AclWI	GGATC	3 cut(s)	361, 550, 563
AcoI	YGGCCR	1 cut(s)	643
AcuI	CTGAAG	2 cut(s)	509, 580
AfiI	CCNNNNNNNGG	1 cut(s)	646
AgsI	TTSAA	1 cut(s)	628
AjnI	CCWGG	3 cut(s)	273, 574, 645
AluBI	AGCT	5 cut(s)	179, 352, 530, 715, 751
AluI	AGCT	5 cut(s)	179, 352, 530, 715, 751
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	2 cut(s)	601, 607
AlwI	GGATC	3 cut(s)	361, 550, 563
AoxI	GGCC	1 cut(s)	643
ApeKI	GCWGC	8 cut(s)	5, 41, 164, 167, 179, 182, 466, 726
Asp700I	GAANNNNTTC	1 cut(s)	593
AspS9I	GGNCC	4 cut(s)	126, 271, 434, 660
AsuHPI	GGTGA	1 cut(s)	4
AvaII	GGWCC	4 cut(s)	126, 271, 434, 660
BalI	TGGCCA	1 cut(s)	645
BamHI	GGATCC	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	532
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	7 cut(s)	53, 151, 154, 166, 194, 453, 713
BccI	CCATC	3 cut(s)	250, 332, 691
BciT130I	CCWGG	3 cut(s)	275, 576, 647
BcoDI	GTCTC	2 cut(s)	601, 607
BfmI	CTRYAG	2 cut(s)	6, 180
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	9 cut(s)	6, 42, 165, 168, 180, 183, 467, 727, 762
BlsI	GCNGC	9 cut(s)	7, 43, 166, 169, 181, 184, 468, 728, 763
Bme1390I	CCNGG	3 cut(s)	275, 576, 647
Bme18I	GGWCC	4 cut(s)	126, 271, 434, 660
BmgT120I	GGNCC	4 cut(s)	126, 271, 434, 660
BmiI	GGNNCC	3 cut(s)	128, 303, 557
BmrFI	CCNGG	3 cut(s)	275, 576, 647
BmsI	GCATC	3 cut(s)	528, 713, 760
BpuEI	CTTGAG	1 cut(s)	49
BsaBI	GATNNNNATC	2 cut(s)	381, 701
BsaJI	CCNNGG	3 cut(s)	171, 640, 765
Bsc4I	CCNNNNNNNGG	1 cut(s)	646
Bse1I	ACTGG	1 cut(s)	437
Bse3DI	GCAATG	1 cut(s)	662
Bse8I	GATNNNNATC	2 cut(s)	381, 701
BseBI	CCWGG	3 cut(s)	275, 576, 647
BseDI	CCNNGG	3 cut(s)	171, 640, 765
BseGI	GGATG	6 cut(s)	268, 321, 343, 385, 543, 775
BseJI	GATNNNNATC	2 cut(s)	381, 701
BseLI	CCNNNNNNNGG	1 cut(s)	646
BseMI	GCAATG	1 cut(s)	662
BseNI	ACTGG	1 cut(s)	437
BseRI	GAGGAG	2 cut(s)	7, 213
BseXI	GCAGC	7 cut(s)	53, 151, 154, 166, 194, 453, 713
BseYI	CCCAGC	1 cut(s)	352
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	645
BsiHKAI	GWGCWC	1 cut(s)	532
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	646
BsmAI	GTCTC	2 cut(s)	601, 607
BsmBI	CGTCTC	1 cut(s)	601
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	645
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	222, 366, 376, 555
Bsp19I	CCATGG	1 cut(s)	640
BspACI	CCGC	2 cut(s)	759, 762
BspANI	GGCC	1 cut(s)	645
BspLI	GGNNCC	3 cut(s)	128, 303, 557
BspMAI	CTGCAG	2 cut(s)	10, 184
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	3 cut(s)	361, 550, 563
BsrDI	GCAATG	1 cut(s)	662
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	3 cut(s)	171, 640, 765
BssMI	GATC	4 cut(s)	222, 366, 376, 555
BssT1I	CCWWGG	3 cut(s)	171, 640, 765
Bst2UI	CCWGG	3 cut(s)	275, 576, 647
Bst4CI	ACNGT	2 cut(s)	38, 70
Bst6I	CTCTTC	3 cut(s)	25, 117, 153
BstAPI	GCANNNNNTGC	2 cut(s)	50, 188
BstDSI	CCRYGG	1 cut(s)	640
BstF5I	GGATG	6 cut(s)	268, 321, 343, 385, 543, 775
BstKTI	GATC	4 cut(s)	225, 369, 379, 558
BstMAI	GTCTC	2 cut(s)	601, 607
BstMBI	GATC	4 cut(s)	222, 366, 376, 555
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 176, 188, 358, 748, 770
BstNI	CCWGG	3 cut(s)	275, 576, 647
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	3 cut(s)	273, 574, 645
BstSFI	CTRYAG	2 cut(s)	6, 180
BstV1I	GCAGC	7 cut(s)	53, 151, 154, 166, 194, 453, 713
BstX2I	RGATCY	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	645
BtgI	CCRYGG	1 cut(s)	640
BtsCI	GGATG	6 cut(s)	268, 321, 343, 385, 543, 775
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	390, 560
BveI	ACCTGC	1 cut(s)	114
Cfr13I	GGNCC	4 cut(s)	126, 271, 434, 660
CviAII	CATG	3 cut(s)	311, 641, 676
DpnI	GATC	4 cut(s)	224, 368, 378, 557
DpnII	GATC	4 cut(s)	222, 366, 376, 555
EaeI	YGGCCR	1 cut(s)	643
Eam1104I	CTCTTC	3 cut(s)	25, 117, 153
EarI	CTCTTC	3 cut(s)	25, 117, 153
Ecl136II	GAGCTC	1 cut(s)	530
Eco130I	CCWWGG	3 cut(s)	171, 640, 765
Eco24I	GRGCYC	1 cut(s)	532
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	4 cut(s)	126, 271, 434, 660
Eco53kI	GAGCTC	1 cut(s)	530
Eco57I	CTGAAG	2 cut(s)	509, 580
EcoICRI	GAGCTC	1 cut(s)	530
EcoO109I	RGGNCCY	2 cut(s)	126, 271
EcoRII	CCWGG	3 cut(s)	273, 574, 645
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	3 cut(s)	171, 640, 765
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	3 cut(s)	171, 640, 765
Esp3I	CGTCTC	1 cut(s)	601
FaeI	CATG	3 cut(s)	314, 644, 679
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	3 cut(s)	310, 640, 675
FauI	CCCGC	1 cut(s)	766
Fnu4HI	GCNGC	9 cut(s)	6, 42, 165, 168, 180, 183, 467, 727, 762
FokI	GGATG	6 cut(s)	275, 308, 350, 372, 550, 782
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	9 cut(s)	6, 42, 165, 168, 180, 183, 467, 727, 762
GluI	GCNGC	9 cut(s)	6, 42, 165, 168, 180, 183, 467, 727, 762
GsaI	CCCAGC	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	645
Hin1II	CATG	3 cut(s)	314, 644, 679
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	1 cut(s)	615
HpaI	GTTAAC	1 cut(s)	345
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	2 cut(s)	345, 663
Hpy188I	TCNGA	1 cut(s)	489
Hpy188III	TCNNGA	3 cut(s)	28, 284, 553
Hpy8I	GTNNAC	2 cut(s)	345, 663
HpyAV	CCTTC	3 cut(s)	113, 425, 506
HpyCH4III	ACNGT	2 cut(s)	38, 70
HpyCH4V	TGCA	9 cut(s)	8, 41, 93, 182, 310, 446, 541, 655, 773
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 176, 188, 358, 748, 770
Hsp92II	CATG	3 cut(s)	314, 644, 679
KspAI	GTTAAC	1 cut(s)	345
Kzo9I	GATC	4 cut(s)	222, 366, 376, 555
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	7 cut(s)	53, 151, 154, 166, 194, 453, 713
LweI	GCATC	3 cut(s)	528, 713, 760
MaeIII	GTNAC	2 cut(s)	10, 64
MalI	GATC	4 cut(s)	224, 368, 378, 557
MboI	GATC	4 cut(s)	222, 366, 376, 555
MboII	GAAGA	4 cut(s)	12, 98, 104, 170
MfeI	CAATTG	1 cut(s)	88
MflI	RGATCY	1 cut(s)	555
MhlI	GDGCHC	1 cut(s)	532
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	4 cut(s)	88, 403, 451, 522
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	609
MmeI	TCCRAC	2 cut(s)	105, 230
Mox20I	TGGCCA	1 cut(s)	645
MroXI	GAANNNNTTC	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	3 cut(s)	344, 398, 719
Msp20I	TGGCCA	1 cut(s)	645
MspR9I	CCNGG	3 cut(s)	275, 576, 647
MunI	CAATTG	1 cut(s)	88
MvaI	CCWGG	3 cut(s)	275, 576, 647
MwoI	GCNNNNNNNGC	6 cut(s)	50, 176, 188, 358, 748, 770
NcoI	CCATGG	1 cut(s)	640
NdeII	GATC	4 cut(s)	222, 366, 376, 555
NlaIII	CATG	3 cut(s)	314, 644, 679
NlaIV	GGNNCC	3 cut(s)	128, 303, 557
NmuCI	GTSAC	2 cut(s)	10, 64
NspI	RCATGY	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	593
PkrI	GCNGC	9 cut(s)	7, 43, 166, 169, 181, 184, 468, 728, 763
PleI	GAGTC	1 cut(s)	609
PpsI	GAGTC	1 cut(s)	609
PpuMI	RGGWCCY	2 cut(s)	126, 271
PsiI	TTATAA	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	532
Psp5II	RGGWCCY	2 cut(s)	126, 271
Psp6I	CCWGG	3 cut(s)	273, 574, 645
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	3 cut(s)	273, 574, 645
PspN4I	GGNNCC	3 cut(s)	128, 303, 557
PspPI	GGNCC	4 cut(s)	126, 271, 434, 660
PspPPI	RGGWCCY	2 cut(s)	126, 271
PstI	CTGCAG	2 cut(s)	10, 184
PsuI	RGATCY	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	532
SaqAI	TTAA	3 cut(s)	344, 398, 719
SatI	GCNGC	9 cut(s)	6, 42, 165, 168, 180, 183, 467, 727, 762
Sau3AI	GATC	4 cut(s)	222, 366, 376, 555
Sau96I	GGNCC	4 cut(s)	126, 271, 434, 660
SchI	GAGTC	1 cut(s)	609
ScrFI	CCNGG	3 cut(s)	275, 576, 647
SduI	GDGCHC	1 cut(s)	532
SetI	ASST	9 cut(s)	17, 128, 177, 181, 273, 354, 532, 717, 753
SfaNI	GCATC	3 cut(s)	528, 713, 760
SfcI	CTRYAG	2 cut(s)	6, 180
SinI	GGWCC	4 cut(s)	126, 271, 434, 660
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	4 cut(s)	88, 403, 451, 522
SsiI	CCGC	2 cut(s)	759, 762
SspI	AATATT	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	532
StyD4I	CCNGG	3 cut(s)	273, 574, 645
StyI	CCWWGG	3 cut(s)	171, 640, 765
TaaI	ACNGT	2 cut(s)	38, 70
TaqI	TCGA	3 cut(s)	245, 427, 587
TasI	AATT	4 cut(s)	88, 403, 451, 522
TauI	GCSGC	1 cut(s)	764
Tru1I	TTAA	3 cut(s)	344, 398, 719
Tru9I	TTAA	3 cut(s)	344, 398, 719
TscAI	CASTG	2 cut(s)	397, 567
TseFI	GTSAC	2 cut(s)	10, 64
TseI	GCWGC	8 cut(s)	5, 41, 164, 167, 179, 182, 466, 726
Tsp45I	GTSAC	2 cut(s)	10, 64
TspDTI	ATGAA	2 cut(s)	171, 461
TspGWI	ACGGA	1 cut(s)	625
TspRI	CASTG	2 cut(s)	397, 567
VpaK11BI	GGWCC	4 cut(s)	126, 271, 434, 660
XceI	RCATGY	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	503
XmnI	GAANNNNTTC	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.