Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Forward (+)

15209357 .. 15211560

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG148600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTGCAGTCACCTCCTCTTCTCTCTTGAGGAACTGTGCAGCAACAACTGTGAGAGCTTTTGTGACTGTGAAAGCCTCCAATTCCAATTTCAGAACTTTCCTTCTTCCTCCTCACTCTCGCAGGTCCCTGTGTCGTGTTAGCGCTACAAACAATGAAGAGGCTGCTGCCAAGGTAGCTGCAGCAAATGCCGACAGTGGAGCTCCAACAATATTTGACAAGATCATAGCAAAGGAAATCCCATCGACCATTGTATACGAGGATGATAAGGTCCTGGCATTTCGGGATATCAACCCACAGGCTCCTGTGCATGTTGTTATCATCCCAAAGAATAGGGATGGGTTAACAGAGCTGGGAAAGGCTGAATCTAGGCATGTGGAAATATTGGGTCAACTTCTGTATGCTGCAAAAAAAGTTGCTGAGAAAGAAGGTATTCTTCACGGGTTTCGTGTGGTTATCAACAATGGTCCAGAGGGATGTAAGTCATCGTTTTATAATGTTTGTCTGTGCCTTCCTTTCACATTTGTGCAATGCTTAGCTTTGTTGACTTCAATCATCAATGTGCTCTCTTCATCCAGGTCAATCTGTTTATCATCTTCACTTGCATCTCCTTGGTGGGAGACAGATGAAATGGCCACCTGGTTGAATATGCAAAAACTGACGGACAGTAAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

225

Amino Acids

24.44

Weight (kDa)

8.69

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	70 - 154	1.7e-15	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	78 - 162	6.8e-18	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
Acc36I	ACCTGC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	633
AfeI	AGCGCT	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	552, 646
AjnI	CCWGG	3 cut(s)	273, 575, 638
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	5 cut(s)	59, 179, 203, 352, 539
AluI	AGCT	5 cut(s)	59, 179, 203, 352, 539
Alw21I	GWGCWC	2 cut(s)	205, 567
Alw26I	GTCTC	1 cut(s)	614
Aor51HI	AGCGCT	1 cut(s)	145
AoxI	GGCC	1 cut(s)	633
ApeKI	GCWGC	7 cut(s)	5, 41, 164, 167, 179, 182, 404
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	126, 271, 467
AsuHPI	GGTGA	1 cut(s)	4
AvaII	GGWCC	3 cut(s)	126, 271, 467
BalI	TGGCCA	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	2 cut(s)	205, 567
BbvI	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 391
BccI	CCATC	2 cut(s)	250, 332
BciT130I	CCWGG	3 cut(s)	275, 577, 640
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	2 cut(s)	6, 180
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
BlpI	GCTNAGC	1 cut(s)	535
BlsI	GCNGC	7 cut(s)	7, 43, 166, 169, 181, 184, 406
Bme1390I	CCNGG	3 cut(s)	275, 577, 640
Bme18I	GGWCC	3 cut(s)	126, 271, 467
BmgT120I	GGNCC	3 cut(s)	126, 271, 467
BmiI	GGNNCC	2 cut(s)	128, 303
BmrFI	CCNGG	3 cut(s)	275, 577, 640
BmsI	GCATC	1 cut(s)	614
Bpu1102I	GCTNAGC	1 cut(s)	535
BpuEI	CTTGAG	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	171, 611
Bse3DI	GCAATG	1 cut(s)	536
BseBI	CCWGG	3 cut(s)	275, 577, 640
BseDI	CCNNGG	2 cut(s)	171, 611
BseGI	GGATG	5 cut(s)	268, 321, 343, 482, 572
BseMI	GCAATG	1 cut(s)	536
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	2 cut(s)	7, 102
BseXI	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 391
BseYI	CCCAGC	1 cut(s)	352
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	635
BsiHKAI	GWGCWC	2 cut(s)	205, 567
BslFI	GGGAC	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	614
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	635
Bsp1286I	GDGCHC	2 cut(s)	205, 567
Bsp143I	GATC	1 cut(s)	222
Bsp1720I	GCTNAGC	1 cut(s)	535
BspANI	GGCC	1 cut(s)	635
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	128, 303
BspMAI	CTGCAG	2 cut(s)	10, 184
BspMI	ACCTGC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	536
BssECI	CCNNGG	2 cut(s)	171, 611
BssMI	GATC	1 cut(s)	222
BssNAI	GTATAC	1 cut(s)	256
BssT1I	CCWWGG	2 cut(s)	171, 611
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	3 cut(s)	275, 577, 640
Bst4CI	ACNGT	5 cut(s)	38, 52, 70, 197, 668
Bst6I	CTCTTC	3 cut(s)	25, 153, 574
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	420, 535
BstF5I	GGATG	5 cut(s)	268, 321, 343, 482, 572
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 188
BstNI	CCWGG	3 cut(s)	275, 577, 640
BstNSI	RCATGY	2 cut(s)	314, 377
BstSCI	CCNGG	3 cut(s)	273, 575, 638
BstSFI	CTRYAG	2 cut(s)	6, 180
BstV1I	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 391
BstZ17I	GTATAC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	635
BtsCI	GGATG	5 cut(s)	268, 321, 343, 482, 572
BtsIMutI	CAGTG	1 cut(s)	202
BveI	ACCTGC	1 cut(s)	114
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	3 cut(s)	126, 271, 467
CsiI	ACCWGGT	1 cut(s)	638
CviAII	CATG	2 cut(s)	311, 374
DdeI	CTNAG	2 cut(s)	420, 535
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	633
Eam1104I	CTCTTC	3 cut(s)	25, 153, 574
EarI	CTCTTC	3 cut(s)	25, 153, 574
Ecl136II	GAGCTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	171, 611
Eco24I	GRGCYC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	3 cut(s)	126, 271, 467
Eco47III	AGCGCT	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoO109I	RGGNCCY	2 cut(s)	126, 271
EcoRII	CCWGG	3 cut(s)	273, 575, 638
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	171, 611
EcoT38I	GRGCYC	1 cut(s)	205
ErhI	CCWWGG	2 cut(s)	171, 611
FaeI	CATG	2 cut(s)	314, 377
FaiI	YATR	7 cut(s)	227, 256, 312, 375, 402, 495, 650
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	2 cut(s)	310, 373
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
FokI	GGATG	5 cut(s)	275, 308, 350, 489, 559
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
GsaI	CCCAGC	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	635
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	314, 377
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	3 cut(s)	345, 392, 546
HindII	GTYRAC	3 cut(s)	345, 392, 546
HinfI	GANTC	1 cut(s)	365
HpaI	GTTAAC	1 cut(s)	345
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	4 cut(s)	256, 345, 392, 546
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	3 cut(s)	28, 284, 470
Hpy8I	GTNNAC	4 cut(s)	256, 345, 392, 546
HpyAV	CCTTC	3 cut(s)	113, 422, 521
HpyCH4III	ACNGT	5 cut(s)	38, 52, 70, 197, 668
HpyCH4V	TGCA	8 cut(s)	8, 41, 182, 310, 407, 529, 605, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 188
HpyF3I	CTNAG	2 cut(s)	420, 535
Hsp92II	CATG	2 cut(s)	314, 377
HspAI	GCGC	1 cut(s)	144
KspAI	GTTAAC	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	3 cut(s)	200, 208, 307
Lsp1109I	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 391
LweI	GCATC	1 cut(s)	614
MabI	ACCWGGT	1 cut(s)	638
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	10, 64
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	6 cut(s)	12, 98, 170, 428, 561, 588
MhlI	GDGCHC	2 cut(s)	205, 567
MlsI	TGGCCA	1 cut(s)	635
MluCI	AATT	2 cut(s)	82, 88
MluNI	TGGCCA	1 cut(s)	635
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	9 cut(s)	24, 25, 28, 88, 120, 123, 154, 253, 466
Mox20I	TGGCCA	1 cut(s)	635
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	635
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	2 cut(s)	524, 560
Msp20I	TGGCCA	1 cut(s)	635
MspR9I	CCNGG	3 cut(s)	275, 577, 640
MvaI	CCWGG	3 cut(s)	275, 577, 640
MwoI	GCNNNNNNNGC	2 cut(s)	176, 188
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	2 cut(s)	314, 377
NlaIV	GGNNCC	2 cut(s)	128, 303
NmuCI	GTSAC	2 cut(s)	10, 64
NspI	RCATGY	2 cut(s)	314, 377
OliI	CACNNNNGTG	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	7 cut(s)	7, 43, 166, 169, 181, 184, 406
PpuMI	RGGWCCY	2 cut(s)	126, 271
PsiI	TTATAA	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	205
Psp5II	RGGWCCY	2 cut(s)	126, 271
Psp6I	CCWGG	3 cut(s)	273, 575, 638
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	3 cut(s)	273, 575, 638
PspN4I	GGNNCC	2 cut(s)	128, 303
PspPI	GGNCC	3 cut(s)	126, 271, 467
PspPPI	RGGWCCY	2 cut(s)	126, 271
PstI	CTGCAG	2 cut(s)	10, 184
RseI	CAYNNNNRTG	2 cut(s)	524, 560
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	3 cut(s)	126, 271, 467
ScrFI	CCNGG	3 cut(s)	275, 577, 640
SduI	GDGCHC	2 cut(s)	205, 567
SexAI	ACCWGGT	1 cut(s)	638
SfaNI	GCATC	1 cut(s)	614
SfcI	CTRYAG	2 cut(s)	6, 180
SinI	GGWCC	3 cut(s)	126, 271, 467
SmiMI	CAYNNNNRTG	2 cut(s)	524, 560
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	2 cut(s)	82, 88
SspI	AATATT	2 cut(s)	213, 384
SspMI	CTAG	1 cut(s)	369
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	3 cut(s)	273, 575, 638
StyI	CCWWGG	2 cut(s)	171, 611
TaaI	ACNGT	5 cut(s)	38, 52, 70, 197, 668
TaqI	TCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	82, 88
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	2 cut(s)	10, 64
TseI	GCWGC	7 cut(s)	5, 41, 164, 167, 179, 182, 404
Tsp45I	GTSAC	2 cut(s)	10, 64
TspDTI	ATGAA	3 cut(s)	171, 561, 642
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	3 cut(s)	126, 271, 467
XceI	RCATGY	2 cut(s)	314, 377
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.