Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Forward (+)

5111112 .. 5112855

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0058700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCCACCGCTGCGTTGCTCCGATCTCTACGACGTCATGACCTCGCTTCAGCCCGTCTGTTCCTACTGCTTGCCGAAGTCTTGATGCCCAGTACTCCAGTAGAATATATCTACTCCATGCAAACCAATGAATCTAGATATTGTACATGTTTGTTTGGTTTTGAGGAGGAGGTTAAGAGTTCATACTGCAGTGGGGTTTTTCTAAAACAATTGAACTTCAAGGTAATATTTTCACTCACTTGCTCACTTGAAGCCTGTGGAGTTCATGTGCAAAGGGGATCAATTTCTGTACCCAGCAAGAGAATGAGATTGATGTACCGTATTATCAAAACTTTTAAGGCATTCTTCACGAGCTCTGATCTCATGTTGCTTGTCTTTGACCACATAAAAACTAGTAGAGGAGCAGAGCTGCATAGGAGTTTTGATGCTGTGTTTGCTTTAGAGGCAACAAGAACCAATTATCAAAACTTTCCAGCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

160

Amino Acids

18.25

Weight (kDa)

9.22

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	37
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	34
AfaI	GTAC	4 cut(s)	94, 145, 291, 317
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	214, 220, 251
AhlI	ACTAGT	1 cut(s)	392
AluBI	AGCT	3 cut(s)	354, 409, 476
AluI	AGCT	3 cut(s)	354, 409, 476
Alw21I	GWGCWC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	11, 409
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	356
BauI	CACGAG	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	396
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	2 cut(s)	135, 393
BfmI	CTRYAG	1 cut(s)	187
BisI	GCNGC	2 cut(s)	12, 410
BlsI	GCNGC	2 cut(s)	13, 411
BmcAI	AGTACT	1 cut(s)	94
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	75, 415
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bse1I	ACTGG	2 cut(s)	90, 98
BseNI	ACTGG	2 cut(s)	90, 98
BseRI	GAGGAG	3 cut(s)	179, 182, 414
BseXI	GCAGC	1 cut(s)	396
BseYI	CCCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp1407I	TGTACA	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	23, 278, 358
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	191
BspPI	GGATC	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	90, 98
BssMI	GATC	3 cut(s)	23, 278, 358
BssNI	GRCGYC	1 cut(s)	34
BssSI	CACGAG	1 cut(s)	349
Bst2BI	CACGAG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	34
BstAUI	TGTACA	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	72
BstKTI	GATC	3 cut(s)	26, 281, 361
BstMBI	GATC	3 cut(s)	23, 278, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 434, 443
BstNSI	RCATGY	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	72
CciI	TCATGA	1 cut(s)	37
Csp6I	GTAC	4 cut(s)	93, 144, 290, 316
CviAII	CATG	5 cut(s)	38, 118, 147, 266, 364
CviJI	RGCY	6 cut(s)	5, 53, 254, 354, 409, 476
CviKI_1	RGCY	6 cut(s)	5, 53, 254, 354, 409, 476
CviQI	GTAC	4 cut(s)	93, 144, 290, 316
DpnI	GATC	3 cut(s)	25, 280, 360
DpnII	GATC	3 cut(s)	23, 278, 358
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	356
Eco53kI	GAGCTC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	356
FaeI	CATG	5 cut(s)	41, 121, 150, 269, 367
FaiI	YATR	9 cut(s)	39, 108, 119, 148, 184, 267, 365, 386, 414
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	5 cut(s)	37, 117, 146, 265, 363
Fnu4HI	GCNGC	2 cut(s)	12, 410
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	2 cut(s)	12, 410
FspBI	CTAG	2 cut(s)	135, 393
GluI	GCNGC	2 cut(s)	12, 410
GsaI	CCCAGC	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	5
Hin1I	GRCGYC	1 cut(s)	34
Hin1II	CATG	5 cut(s)	41, 121, 150, 269, 367
HinfI	GANTC	1 cut(s)	131
Hpy188I	TCNGA	2 cut(s)	23, 358
Hpy188III	TCNNGA	4 cut(s)	38, 82, 135, 349
Hpy99I	CGWCG	1 cut(s)	36
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	121, 189, 271, 412
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 434, 443
HpySE526I	ACGT	1 cut(s)	34
Hsp92I	GRCGYC	1 cut(s)	34
Hsp92II	CATG	5 cut(s)	41, 121, 150, 269, 367
Kzo9I	GATC	3 cut(s)	23, 278, 358
LmnI	GCTCC	2 cut(s)	24, 401
LpnPI	CCDG	4 cut(s)	103, 111, 268, 307
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	2 cut(s)	75, 415
MaeI	CTAG	2 cut(s)	135, 393
MaeII	ACGT	1 cut(s)	34
MalI	GATC	3 cut(s)	25, 280, 360
MboI	GATC	3 cut(s)	23, 278, 358
MboII	GAAGA	1 cut(s)	337
MfeI	CAATTG	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	356
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	209, 282, 457
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	53, 157, 160, 163, 392, 436
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	174, 336
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	11, 476
MunI	CAATTG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	341
MwoI	GCNNNNNNNGC	3 cut(s)	11, 434, 443
NdeII	GATC	3 cut(s)	23, 278, 358
NlaIII	CATG	5 cut(s)	41, 121, 150, 269, 367
NspI	RCATGY	1 cut(s)	150
PagI	TCATGA	1 cut(s)	37
PciI	ACATGT	1 cut(s)	146
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	13, 411
PscI	ACATGT	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	4 cut(s)	94, 145, 291, 317
RsaNI	GTAC	4 cut(s)	93, 144, 290, 316
SacI	GAGCTC	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	174, 336
SatI	GCNGC	2 cut(s)	12, 410
Sau3AI	GATC	3 cut(s)	23, 278, 358
ScaI	AGTACT	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	356
SetI	ASST	7 cut(s)	37, 45, 174, 225, 356, 411, 478
SfaNI	GCATC	2 cut(s)	75, 415
SfcI	CTRYAG	1 cut(s)	187
SpeI	ACTAGT	1 cut(s)	392
Sse9I	AATT	3 cut(s)	209, 282, 457
SsiI	CCGC	1 cut(s)	9
SspI	AATATT	1 cut(s)	228
SspMI	CTAG	2 cut(s)	135, 393
SstI	GAGCTC	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	37
TasI	AATT	3 cut(s)	209, 282, 457
TatI	WGTACW	2 cut(s)	92, 143
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	174, 336
Tru9I	TTAA	2 cut(s)	174, 336
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	2 cut(s)	11, 409
TspDTI	ATGAA	3 cut(s)	144, 171, 254
TspRI	CASTG	1 cut(s)	196
XbaI	TCTAGA	1 cut(s)	134
XceI	RCATGY	1 cut(s)	150
XspI	CTAG	2 cut(s)	135, 393
ZraI	GACGTC	1 cut(s)	35
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.