Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Reverse (-)

36304127 .. 36310662

Gene Structure 6536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG204100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTGCAGTCACCTCCTCTTCTCTCTTGAGGAACTGTGCAACAACAACTGTGAGAGCTTTTGTGACTGTGAAAGCCTCCAACCCCAATTTCAGAACTTTCCTTCTTCCTCTTCACTCTCGTAGGTCCCTGTGTCGTGTTAGCGCTACAAACAATGAAGAGGCTGCTGCCAAGGTAGCTGCAGCAAATGCTGACAGAGGAGCTCCAACAATATTTGACAAGATCATAGCAAAGGAAATCCCATCGACCATTGTATACGAGGATGATAAGGTCCTGGCATTTCGGGATATCAACCCACAGGCTCCTGTGCATGTTGTTATCATCCCAAAGAATAGGGATGGCTTAACAGAGCTCGGAAAGGCTGAATCTAGGCATGTGGAAATATTGGGTCAACTTCTATATGCTGGAAAAAAAGTTGCTGAGAAAGAAGGTATTCTCCACGGGTTTCGTGTGGTTATCAACAATGGTCCAGAGGGATGTCAATCTGTTTATCATCTCCACTTGCATCTCCTTGGTCTGATTTTTTTTTCCTTGTGGGTGAAGAACTTGAGAGCTAATGAACTCATGGAATTTTACAAAGGAGAACATTCCTACAATGTTATAAGGAAAAAAAAAAAAGAGTGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

209

Amino Acids

23.3

Weight (kDa)

9.58

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	70 - 181	1.7e-23	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	78 - 172	5.3e-26	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
AccI	GTMKAC	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	569
AfeI	AGCGCT	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	5 cut(s)	59, 179, 203, 352, 554
AluI	AGCT	5 cut(s)	59, 179, 203, 352, 554
Alw21I	GWGCWC	2 cut(s)	205, 354
Aor51HI	AGCGCT	1 cut(s)	145
ApeKI	GCWGC	5 cut(s)	5, 164, 167, 179, 182
ApoI	RAATTY	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	126, 271, 467
AsuHPI	GGTGA	2 cut(s)	4, 550
AvaII	GGWCC	3 cut(s)	126, 271, 467
BanII	GRGCYC	2 cut(s)	205, 354
Bbv12I	GWGCWC	2 cut(s)	205, 354
BbvI	GCAGC	4 cut(s)	151, 154, 166, 194
BccI	CCATC	2 cut(s)	250, 332
BciT130I	CCWGG	1 cut(s)	275
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	2 cut(s)	6, 180
BfoI	RGCGCY	1 cut(s)	147
BisI	GCNGC	5 cut(s)	6, 165, 168, 180, 183
BlsI	GCNGC	5 cut(s)	7, 166, 169, 181, 184
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	3 cut(s)	126, 271, 467
BmgT120I	GGNCC	3 cut(s)	126, 271, 467
BmiI	GGNNCC	2 cut(s)	128, 303
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	514
BpuEI	CTTGAG	2 cut(s)	49, 568
BsaBI	GATNNNNATC	1 cut(s)	481
BsaJI	CCNNGG	3 cut(s)	171, 439, 511
Bse8I	GATNNNNATC	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	3 cut(s)	171, 439, 511
BseGI	GGATG	4 cut(s)	268, 321, 343, 482
BseJI	GATNNNNATC	1 cut(s)	481
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	2 cut(s)	7, 213
BseXI	GCAGC	4 cut(s)	151, 154, 166, 194
BsiHKAI	GWGCWC	2 cut(s)	205, 354
BslFI	GGGAC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	205, 354
Bsp143I	GATC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	128, 303
BspMAI	CTGCAG	2 cut(s)	10, 184
BssECI	CCNNGG	3 cut(s)	171, 439, 511
BssMI	GATC	1 cut(s)	222
BssNAI	GTATAC	1 cut(s)	256
BssT1I	CCWWGG	2 cut(s)	171, 511
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	3 cut(s)	38, 52, 70
Bst6I	CTCTTC	3 cut(s)	25, 117, 153
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	439
BstF5I	GGATG	4 cut(s)	268, 321, 343, 482
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 188
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	2 cut(s)	314, 377
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	2 cut(s)	6, 180
BstV1I	GCAGC	4 cut(s)	151, 154, 166, 194
BstZ17I	GTATAC	1 cut(s)	256
BtgI	CCRYGG	1 cut(s)	439
BtsCI	GGATG	4 cut(s)	268, 321, 343, 482
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	3 cut(s)	126, 271, 467
CviAII	CATG	3 cut(s)	311, 374, 565
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
Eam1104I	CTCTTC	3 cut(s)	25, 117, 153
EarI	CTCTTC	3 cut(s)	25, 117, 153
Ecl136II	GAGCTC	2 cut(s)	203, 352
Eco130I	CCWWGG	2 cut(s)	171, 511
Eco24I	GRGCYC	2 cut(s)	205, 354
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	3 cut(s)	126, 271, 467
Eco47III	AGCGCT	1 cut(s)	145
Eco53kI	GAGCTC	2 cut(s)	203, 352
EcoICRI	GAGCTC	2 cut(s)	203, 352
EcoO109I	RGGNCCY	2 cut(s)	126, 271
EcoRII	CCWGG	1 cut(s)	273
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	171, 511
EcoT38I	GRGCYC	2 cut(s)	205, 354
ErhI	CCWWGG	2 cut(s)	171, 511
FaeI	CATG	3 cut(s)	314, 377, 568
FaiI	YATR	8 cut(s)	227, 256, 312, 375, 400, 402, 566, 602
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	3 cut(s)	310, 373, 564
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	5 cut(s)	6, 165, 168, 180, 183
FokI	GGATG	4 cut(s)	275, 308, 350, 489
FriOI	GRGCYC	2 cut(s)	205, 354
Fsp4HI	GCNGC	5 cut(s)	6, 165, 168, 180, 183
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	5 cut(s)	6, 165, 168, 180, 183
HaeII	RGCGCY	1 cut(s)	147
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	314, 377, 568
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HinfI	GANTC	1 cut(s)	365
HphI	GGTGA	2 cut(s)	4, 550
Hpy166II	GTNNAC	2 cut(s)	256, 392
Hpy188I	TCNGA	3 cut(s)	95, 356, 519
Hpy188III	TCNNGA	3 cut(s)	28, 284, 470
Hpy8I	GTNNAC	2 cut(s)	256, 392
HpyAV	CCTTC	2 cut(s)	113, 422
HpyCH4III	ACNGT	3 cut(s)	38, 52, 70
HpyCH4V	TGCA	6 cut(s)	8, 41, 182, 310, 505, 624
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 188
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	314, 377, 568
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	3 cut(s)	200, 208, 307
LpnPI	CCDG	7 cut(s)	143, 260, 284, 287, 318, 390, 483
Lsp1109I	GCAGC	4 cut(s)	151, 154, 166, 194
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	10, 64
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	5 cut(s)	12, 98, 104, 170, 553
MhlI	GDGCHC	2 cut(s)	205, 354
MluCI	AATT	2 cut(s)	88, 569
MmeI	TCCRAC	2 cut(s)	105, 230
MnlI	CCTC	9 cut(s)	24, 25, 28, 88, 120, 154, 191, 253, 466
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	176, 188
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	3 cut(s)	314, 377, 568
NlaIV	GGNNCC	2 cut(s)	128, 303
NmuCI	GTSAC	2 cut(s)	10, 64
NspI	RCATGY	2 cut(s)	314, 377
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	5 cut(s)	7, 166, 169, 181, 184
PpuMI	RGGWCCY	2 cut(s)	126, 271
PsiI	TTATAA	1 cut(s)	602
Psp124BI	GAGCTC	2 cut(s)	205, 354
Psp5II	RGGWCCY	2 cut(s)	126, 271
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	128, 303
PspPI	GGNCC	3 cut(s)	126, 271, 467
PspPPI	RGGWCCY	2 cut(s)	126, 271
PstI	CTGCAG	2 cut(s)	10, 184
SacI	GAGCTC	2 cut(s)	205, 354
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	5 cut(s)	6, 165, 168, 180, 183
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	3 cut(s)	126, 271, 467
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	2 cut(s)	205, 354
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	2 cut(s)	6, 180
SinI	GGWCC	3 cut(s)	126, 271, 467
SmlI	CTYRAG	2 cut(s)	28, 547
SmoI	CTYRAG	2 cut(s)	28, 547
Sse9I	AATT	2 cut(s)	88, 569
SspI	AATATT	2 cut(s)	213, 384
SspMI	CTAG	1 cut(s)	369
SstI	GAGCTC	2 cut(s)	205, 354
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	2 cut(s)	171, 511
TaaI	ACNGT	3 cut(s)	38, 52, 70
TaqI	TCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	88, 569
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseFI	GTSAC	2 cut(s)	10, 64
TseI	GCWGC	5 cut(s)	5, 164, 167, 179, 182
Tsp45I	GTSAC	2 cut(s)	10, 64
TspDTI	ATGAA	2 cut(s)	171, 573
VpaK11BI	GGWCC	3 cut(s)	126, 271, 467
XapI	RAATTY	1 cut(s)	569
XceI	RCATGY	2 cut(s)	314, 377
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.