Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Forward (+)

7396191 .. 7398973

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTGCAGTTACCTCCTTGTCTCTCTTGAGGAACTGTGCAGCAACAACAGTGAGAGCTTTTGTGGCTGTGAAAGCCTCCAACCCCAATTTCAAAGCTTTCCTTCTTCCCCTTCAATCTCAAAGCTTCCTGCCATGTGATCATGAGTTACATGTGGTTCTTAGGTCCCTGTGTCGTGTTAGTGCTACAAGCAATGAAGAGGCTGCTGCCAAGGTAGCTGCAGCTAATGCCGACAGTGGAGCTCCAACAATATTTGACAAGATTATAGCAAAGGAAATCCCATCAAGCATTGTATACGAGGATGATAAGGTCTTGGCATTTCGGGATATCAACCCGCAGGCTCCTGTGCATGTTGTAATCATCCCAAAGAATAGGGATGGGTTAACAGAGCTGGCAAAGGCTGAATCTAGGCATGTGGAAATATTGGGTCAACTTCTGTATGCTGCAAAAAAAGTTGCTGAGAAAGAAGGTATTCTCGACGGGTTTCGTGTGGTTATCAACAATGGTCCAGAGGGATGTCAATCTGTTTATCATCTCCACTTGCATCTCCTCGGTGGGAGACAGATGAAATGGCCACCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

195

Amino Acids

21.0

Weight (kDa)

8.36

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	83 - 185	3.7e-23	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	91 - 188	1.4e-28	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	572
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	94, 116
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	7 cut(s)	59, 98, 126, 218, 224, 242, 391
AluI	AGCT	7 cut(s)	59, 98, 126, 218, 224, 242, 391
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	2 cut(s)	27, 553
AoxI	GGCC	1 cut(s)	572
ApeKI	GCWGC	7 cut(s)	5, 41, 203, 206, 218, 221, 443
Asp700I	GAANNNNTTC	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	165, 506
AvaII	GGWCC	2 cut(s)	165, 506
BalI	TGGCCA	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	6 cut(s)	53, 190, 193, 205, 233, 430
BccI	CCATC	2 cut(s)	289, 371
BciT130I	CCWGG	1 cut(s)	579
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	27, 553
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	2 cut(s)	6, 219
BisI	GCNGC	7 cut(s)	6, 42, 204, 207, 219, 222, 444
BlsI	GCNGC	7 cut(s)	7, 43, 205, 208, 220, 223, 445
Bme1390I	CCNGG	1 cut(s)	579
Bme18I	GGWCC	2 cut(s)	165, 506
BmgT120I	GGNCC	2 cut(s)	165, 506
BmiI	GGNNCC	2 cut(s)	167, 342
BmrFI	CCNGG	1 cut(s)	579
BmsI	GCATC	1 cut(s)	553
BpuEI	CTTGAG	1 cut(s)	49
BsaBI	GATNNNNATC	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	210, 550
Bse3DI	GCAATG	1 cut(s)	199
Bse8I	GATNNNNATC	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	2 cut(s)	210, 550
BseGI	GGATG	4 cut(s)	307, 360, 382, 521
BseJI	GATNNNNATC	1 cut(s)	520
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	450
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	6 cut(s)	53, 190, 193, 205, 233, 430
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	151
BsmAI	GTCTC	2 cut(s)	27, 553
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	1 cut(s)	451
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	167, 342
BspMAI	CTGCAG	2 cut(s)	10, 223
BsrDI	GCAATG	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	210, 550
BssMI	GATC	1 cut(s)	139
BssNAI	GTATAC	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	210
Bst1107I	GTATAC	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	38, 52, 236
Bst6I	CTCTTC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	339, 393
BstDEI	CTNAG	2 cut(s)	161, 459
BstF5I	GGATG	4 cut(s)	307, 360, 382, 521
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	2 cut(s)	27, 553
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 74, 215, 227
BstNI	CCWGG	1 cut(s)	579
BstNSI	RCATGY	3 cut(s)	155, 353, 416
BstSCI	CCNGG	1 cut(s)	577
BstSFI	CTRYAG	2 cut(s)	6, 219
BstV1I	GCAGC	6 cut(s)	53, 190, 193, 205, 233, 430
BstZ17I	GTATAC	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	574
BtsCI	GGATG	4 cut(s)	307, 360, 382, 521
BtsIMutI	CAGTG	2 cut(s)	57, 241
Cac8I	GCNNGC	2 cut(s)	339, 393
CciI	TCATGA	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	165, 506
CsiI	ACCWGGT	1 cut(s)	577
CviAII	CATG	5 cut(s)	135, 143, 152, 350, 413
DdeI	CTNAG	2 cut(s)	161, 459
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	572
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	244
Eco32I	GATATC	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	165, 506
Eco53kI	GAGCTC	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	577
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	5 cut(s)	138, 146, 155, 353, 416
FaiI	YATR	8 cut(s)	136, 144, 153, 266, 295, 351, 414, 441
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	5 cut(s)	134, 142, 151, 349, 412
FauI	CCCGC	1 cut(s)	342
FbaI	TGATCA	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	7 cut(s)	6, 42, 204, 207, 219, 222, 444
FokI	GGATG	4 cut(s)	314, 347, 389, 528
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	7 cut(s)	6, 42, 204, 207, 219, 222, 444
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	7 cut(s)	6, 42, 204, 207, 219, 222, 444
HaeIII	GGCC	1 cut(s)	574
Hin1II	CATG	5 cut(s)	138, 146, 155, 353, 416
HincII	GTYRAC	2 cut(s)	384, 431
HindII	GTYRAC	2 cut(s)	384, 431
HindIII	AAGCTT	2 cut(s)	96, 124
HinfI	GANTC	1 cut(s)	404
HpaI	GTTAAC	1 cut(s)	384
Hpy166II	GTNNAC	3 cut(s)	295, 384, 431
Hpy188III	TCNNGA	5 cut(s)	28, 143, 323, 476, 509
Hpy8I	GTNNAC	3 cut(s)	295, 384, 431
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	3 cut(s)	113, 122, 461
HpyCH4III	ACNGT	3 cut(s)	38, 52, 236
HpyCH4V	TGCA	6 cut(s)	8, 41, 221, 349, 446, 544
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 74, 215, 227
HpyF3I	CTNAG	2 cut(s)	161, 459
Hsp92II	CATG	5 cut(s)	138, 146, 155, 353, 416
Ksp22I	TGATCA	1 cut(s)	139
KspAI	GTTAAC	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	3 cut(s)	239, 247, 346
LpnPI	CCDG	7 cut(s)	143, 182, 323, 357, 377, 522, 564
Lsp1109I	GCAGC	6 cut(s)	53, 190, 193, 205, 233, 430
LweI	GCATC	1 cut(s)	553
MabI	ACCWGGT	1 cut(s)	577
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	10, 147
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	2 cut(s)	98, 209
MhlI	GDGCHC	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	574
MluCI	AATT	1 cut(s)	88
MluNI	TGGCCA	1 cut(s)	574
MmeI	TCCRAC	2 cut(s)	105, 269
MnlI	CCTC	7 cut(s)	24, 25, 88, 193, 292, 505, 560
Mox20I	TGGCCA	1 cut(s)	574
MroXI	GAANNNNTTC	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	574
MseI	TTAA	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	574
MspR9I	CCNGG	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	4 cut(s)	65, 74, 215, 227
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	5 cut(s)	138, 146, 155, 353, 416
NlaIV	GGNNCC	2 cut(s)	167, 342
NspI	RCATGY	3 cut(s)	155, 353, 416
PagI	TCATGA	1 cut(s)	142
PciI	ACATGT	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	7 cut(s)	7, 43, 205, 208, 220, 223, 445
PpuMI	RGGWCCY	1 cut(s)	165
PscI	ACATGT	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	2 cut(s)	167, 342
PspPI	GGNCC	2 cut(s)	165, 506
PspPPI	RGGWCCY	1 cut(s)	165
PstI	CTGCAG	2 cut(s)	10, 223
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	7 cut(s)	6, 42, 204, 207, 219, 222, 444
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	2 cut(s)	165, 506
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	1 cut(s)	244
SexAI	ACCWGGT	1 cut(s)	577
SfaNI	GCATC	1 cut(s)	553
SfcI	CTRYAG	2 cut(s)	6, 219
SinI	GGWCC	2 cut(s)	165, 506
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	1 cut(s)	335
SspI	AATATT	2 cut(s)	252, 423
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	577
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	3 cut(s)	38, 52, 236
TaqI	TCGA	1 cut(s)	477
TasI	AATT	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	2 cut(s)	57, 241
TseI	GCWGC	7 cut(s)	5, 41, 203, 206, 218, 221, 443
TspDTI	ATGAA	2 cut(s)	210, 581
TspRI	CASTG	2 cut(s)	57, 241
VpaK11BI	GGWCC	2 cut(s)	165, 506
XceI	RCATGY	3 cut(s)	155, 353, 416
XmiI	GTMKAC	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.