Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Forward (+)

50806674 .. 50811383

Gene Structure 4710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG345500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTGCAGTCACCTCCTCTTCTCTCTTGAGGAACTGTGCAGCAACAACTGCGAGAGCTTTTGTGACTGTGAAAGCCTCCAACCCCAATTTCAGAACTTTCCTTCTTCCTCTTCACTCTCGCAGGTCCCTGTGTCGTGTTAGCACTACAAACAATGAAGAGGCTGCTGCCAAGGTAGCTGCAGCAAATGCTGACAGAGGAGCTCCAACAATATTTGACAAGATCATAGCAAAGGAAATCCCATCGACCATTGTATACGAGGATGATAAGGTCCTGGCATTTCGGGATATCAACCCACAGGCTCCTGTGCATGTTGTTATCATCCCAAAGAATAGGGATGGGTTAACAGAGCTGGGAAAGGCTGAATCTAGGCATGTGGAAATATTGGGTCAACTTCTATATGCTGCAAAAAAAGTTGCTGAGAAAGAAGGTATTCTTCACGGGCAGAGCAAATACAAAAGACAGAGCAAATACGATGGGTATGTGGCATGGTTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

166

Amino Acids

18.25

Weight (kDa)

9.63

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	70 - 146	1.5e-15	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	78 - 148	1.1e-14	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	255
AjnI	CCWGG	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	4 cut(s)	59, 179, 203, 352
AluI	AGCT	4 cut(s)	59, 179, 203, 352
Alw21I	GWGCWC	1 cut(s)	205
ApeKI	GCWGC	7 cut(s)	5, 41, 164, 167, 179, 182, 404
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	126, 271
AsuHPI	GGTGA	1 cut(s)	4
AvaII	GGWCC	2 cut(s)	126, 271
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 391
BccI	CCATC	3 cut(s)	250, 332, 470
BciT130I	CCWGG	1 cut(s)	275
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	2 cut(s)	6, 180
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
BlsI	GCNGC	7 cut(s)	7, 43, 166, 169, 181, 184, 406
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	2 cut(s)	126, 271
BmgT120I	GGNCC	2 cut(s)	126, 271
BmiI	GGNNCC	2 cut(s)	128, 303
BmrFI	CCNGG	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	3 cut(s)	268, 321, 343
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	2 cut(s)	7, 213
BseXI	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 391
BseYI	CCCAGC	1 cut(s)	352
BsgI	GTGCAG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	128, 303
BspMAI	CTGCAG	2 cut(s)	10, 184
BspMI	ACCTGC	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	222
BssNAI	GTATAC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	171
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	38, 70
Bst6I	CTCTTC	3 cut(s)	25, 117, 153
BstAPI	GCANNNNNTGC	2 cut(s)	50, 188
BstDEI	CTNAG	1 cut(s)	420
BstF5I	GGATG	3 cut(s)	268, 321, 343
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 176, 188
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	2 cut(s)	314, 377
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	2 cut(s)	6, 180
BstV1I	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 391
BstZ17I	GTATAC	1 cut(s)	256
BtsCI	GGATG	3 cut(s)	268, 321, 343
BveI	ACCTGC	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	126, 271
CviAII	CATG	3 cut(s)	311, 374, 489
CviJI	RGCY	9 cut(s)	5, 59, 77, 164, 179, 203, 302, 352, 362
CviKI_1	RGCY	9 cut(s)	5, 59, 77, 164, 179, 203, 302, 352, 362
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
Eam1104I	CTCTTC	3 cut(s)	25, 117, 153
EarI	CTCTTC	3 cut(s)	25, 117, 153
Ecl136II	GAGCTC	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	126, 271
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoO109I	RGGNCCY	2 cut(s)	126, 271
EcoRII	CCWGG	1 cut(s)	273
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	3 cut(s)	314, 377, 492
FaiI	YATR	9 cut(s)	227, 256, 312, 375, 400, 402, 483, 490, 499
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	3 cut(s)	310, 373, 488
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
FokI	GGATG	3 cut(s)	275, 308, 350
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
GsaI	CCCAGC	1 cut(s)	356
Hin1II	CATG	3 cut(s)	314, 377, 492
HincII	GTYRAC	2 cut(s)	345, 392
HindII	GTYRAC	2 cut(s)	345, 392
HinfI	GANTC	1 cut(s)	365
HpaI	GTTAAC	1 cut(s)	345
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	3 cut(s)	256, 345, 392
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	2 cut(s)	28, 284
Hpy8I	GTNNAC	3 cut(s)	256, 345, 392
HpyAV	CCTTC	2 cut(s)	113, 422
HpyCH4III	ACNGT	2 cut(s)	38, 70
HpyCH4V	TGCA	5 cut(s)	8, 41, 182, 310, 407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 176, 188
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	314, 377, 492
KspAI	GTTAAC	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	3 cut(s)	200, 208, 307
LpnPI	CCDG	7 cut(s)	109, 143, 260, 284, 287, 318, 338
Lsp1109I	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 391
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	10, 64
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	5 cut(s)	12, 98, 104, 170, 428
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	1 cut(s)	88
MmeI	TCCRAC	2 cut(s)	105, 230
MnlI	CCTC	8 cut(s)	24, 25, 28, 88, 120, 154, 191, 253
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	50, 176, 188
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	3 cut(s)	314, 377, 492
NlaIV	GGNNCC	2 cut(s)	128, 303
NmuCI	GTSAC	2 cut(s)	10, 64
NspI	RCATGY	2 cut(s)	314, 377
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	7 cut(s)	7, 43, 166, 169, 181, 184, 406
PpuMI	RGGWCCY	2 cut(s)	126, 271
Psp124BI	GAGCTC	1 cut(s)	205
Psp5II	RGGWCCY	2 cut(s)	126, 271
Psp6I	CCWGG	1 cut(s)	273
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	128, 303
PspPI	GGNCC	2 cut(s)	126, 271
PspPPI	RGGWCCY	2 cut(s)	126, 271
PstI	CTGCAG	2 cut(s)	10, 184
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	2 cut(s)	126, 271
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	9 cut(s)	17, 61, 128, 177, 181, 205, 273, 354, 433
SfcI	CTRYAG	2 cut(s)	6, 180
SinI	GGWCC	2 cut(s)	126, 271
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	1 cut(s)	88
SspI	AATATT	2 cut(s)	213, 384
SspMI	CTAG	1 cut(s)	369
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	38, 70
TaqI	TCGA	1 cut(s)	245
TasI	AATT	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseFI	GTSAC	2 cut(s)	10, 64
TseI	GCWGC	7 cut(s)	5, 41, 164, 167, 179, 182, 404
Tsp45I	GTSAC	2 cut(s)	10, 64
TspDTI	ATGAA	1 cut(s)	171
VpaK11BI	GGWCC	2 cut(s)	126, 271
XceI	RCATGY	2 cut(s)	314, 377
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.