Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Forward (+)

6015665 .. 6018529

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G113300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTGCAGTTACCTCCTTTTCTCTCTTTAGGAACTGTGCATCAACAACTGTGAGAGCTTTTGTGACAGTGAAAGCCTCCAACCCCAATTTCACAACCTTCCTTCTTCCTCTTCGCTCTCGCAGATCCCTGTGCCGTGTTAGCGCTACAAACGATGAGGAGGCTGCTGCCAAGGTAGCTGCAGCTAATGCCAACAGTGGAGCTCCAACAATATTTGACAAGATCATTGCAAAGGAAATCCCATCAAGCATTGTATACGAGGATGATAAGGTCCTGGCATTTCGGGATATCAACCCACAGGCTCCTGTTCACGTTTTAGTCATTCCAAAGTTTAGGGATGGATTAACTGAGCTGAGAAAGGCTGAACTTAGGCATGTTGAAATACTGGGTCAACTTCTCCATGCTGCAAAAATAGTTGCCGAGATAGAAGGCATTCTTGATGGGTTTCGTGTGGTTATCAACAACGGTCCAGAGGCATGTCAATCTGTTTATCATCTCCACTTGCATGTCCTTGGTGGAAGACAGATGAAATGGCCAGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

182

Amino Acids

19.77

Weight (kDa)

9.12

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AclWI	GGATC	1 cut(s)	120
AcoI	YGGCCR	1 cut(s)	533
AfeI	AGCGCT	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	6 cut(s)	59, 179, 185, 203, 352, 539
AluI	AGCT	6 cut(s)	59, 179, 185, 203, 352, 539
Alw21I	GWGCWC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	120
Aor51HI	AGCGCT	1 cut(s)	145
AoxI	GGCC	1 cut(s)	533
ApeKI	GCWGC	6 cut(s)	5, 164, 167, 179, 182, 404
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	271, 467
AvaII	GGWCC	2 cut(s)	271, 467
BalI	TGGCCA	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	5 cut(s)	151, 154, 166, 194, 391
BccI	CCATC	3 cut(s)	250, 332, 434
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	275
BfmI	CTRYAG	2 cut(s)	6, 180
BfoI	RGCGCY	1 cut(s)	147
BisI	GCNGC	6 cut(s)	6, 165, 168, 180, 183, 405
BlsI	GCNGC	6 cut(s)	7, 166, 169, 181, 184, 406
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	2 cut(s)	271, 467
BmgT120I	GGNCC	2 cut(s)	271, 467
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	275
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	526
BsaJI	CCNNGG	2 cut(s)	171, 511
Bse1I	ACTGG	1 cut(s)	390
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	171, 511
BseGI	GGATG	2 cut(s)	268, 343
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	339, 344
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	5 cut(s)	151, 154, 166, 194, 391
BshFI	GGCC	1 cut(s)	535
BsiHKAI	GWGCWC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	125, 222
BspANI	GGCC	1 cut(s)	535
BspCNI	CTCAG	2 cut(s)	340, 345
BspLI	GGNNCC	1 cut(s)	303
BspMAI	CTGCAG	2 cut(s)	10, 184
BspPI	GGATC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	171, 511
BssMI	GATC	2 cut(s)	125, 222
BssNAI	GTATAC	1 cut(s)	256
BssT1I	CCWWGG	2 cut(s)	171, 511
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	5 cut(s)	38, 52, 70, 197, 467
Bst6I	CTCTTC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	3 cut(s)	348, 353, 368
BstF5I	GGATG	2 cut(s)	268, 343
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	128, 225
BstMBI	GATC	2 cut(s)	125, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 176, 188
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	3 cut(s)	377, 480, 509
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	2 cut(s)	6, 180
BstV1I	GCAGC	5 cut(s)	151, 154, 166, 194, 391
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BstZ17I	GTATAC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	268, 343
BtsIMutI	CAGTG	2 cut(s)	75, 202
Cac8I	GCNNGC	1 cut(s)	537
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	271, 467
CviAII	CATG	4 cut(s)	374, 401, 477, 506
DdeI	CTNAG	3 cut(s)	348, 353, 368
DpnI	GATC	2 cut(s)	127, 224
DpnII	GATC	2 cut(s)	125, 222
EaeI	YGGCCR	1 cut(s)	533
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	171, 511
Eco24I	GRGCYC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	271, 467
Eco47III	AGCGCT	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	273
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	171, 511
EcoT38I	GRGCYC	1 cut(s)	205
ErhI	CCWWGG	2 cut(s)	171, 511
FaeI	CATG	4 cut(s)	377, 404, 480, 509
FaiI	YATR	5 cut(s)	256, 375, 402, 478, 507
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	4 cut(s)	373, 400, 476, 505
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	6 cut(s)	6, 165, 168, 180, 183, 405
FokI	GGATG	2 cut(s)	275, 350
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	6 cut(s)	6, 165, 168, 180, 183, 405
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	6 cut(s)	6, 165, 168, 180, 183, 405
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	535
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	4 cut(s)	377, 404, 480, 509
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
Hpy166II	GTNNAC	3 cut(s)	256, 310, 392
Hpy188III	TCNNGA	3 cut(s)	284, 437, 470
Hpy8I	GTNNAC	3 cut(s)	256, 310, 392
HpyAV	CCTTC	3 cut(s)	109, 113, 422
HpyCH4III	ACNGT	5 cut(s)	38, 52, 70, 197, 467
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	6 cut(s)	8, 41, 182, 230, 407, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 176, 188
HpyF3I	CTNAG	3 cut(s)	348, 353, 368
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	377, 404, 480, 509
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	125, 222
LmnI	GCTCC	3 cut(s)	200, 208, 307
LpnPI	CCDG	8 cut(s)	143, 260, 284, 287, 318, 371, 483, 525
Lsp1109I	GCAGC	5 cut(s)	151, 154, 166, 194, 391
LweI	GCATC	1 cut(s)	50
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	10, 64
MalI	GATC	2 cut(s)	127, 224
MboI	GATC	2 cut(s)	125, 222
MboII	GAAGA	3 cut(s)	98, 104, 531
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	205
MlsI	TGGCCA	1 cut(s)	535
MluCI	AATT	1 cut(s)	88
MluNI	TGGCCA	1 cut(s)	535
MmeI	TCCRAC	2 cut(s)	105, 230
MnlI	CCTC	7 cut(s)	25, 88, 120, 151, 154, 253, 466
Mox20I	TGGCCA	1 cut(s)	535
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	535
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	535
MspA1I	CMGCKG	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	275
Mva1269I	GAATGC	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	141, 176, 188
NdeII	GATC	2 cut(s)	125, 222
NlaIII	CATG	4 cut(s)	377, 404, 480, 509
NlaIV	GGNNCC	1 cut(s)	303
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	3 cut(s)	377, 480, 509
PctI	GAATGC	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	432
PkrI	GCNGC	6 cut(s)	7, 166, 169, 181, 184, 406
PpuMI	RGGWCCY	1 cut(s)	271
Psp124BI	GAGCTC	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	271, 467
PspPPI	RGGWCCY	1 cut(s)	271
PstI	CTGCAG	2 cut(s)	10, 184
PsuI	RGATCY	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	539
RseI	CAYNNNNRTG	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	6 cut(s)	6, 165, 168, 180, 183, 405
Sau3AI	GATC	2 cut(s)	125, 222
Sau96I	GGNCC	2 cut(s)	271, 467
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	1 cut(s)	50
SfcI	CTRYAG	2 cut(s)	6, 180
SinI	GGWCC	2 cut(s)	271, 467
SmiMI	CAYNNNNRTG	1 cut(s)	504
Sse9I	AATT	1 cut(s)	88
SspI	AATATT	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	2 cut(s)	171, 511
TaaI	ACNGT	5 cut(s)	38, 52, 70, 197, 467
TaiI	ACGT	1 cut(s)	315
TasI	AATT	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	2 cut(s)	75, 202
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	6 cut(s)	5, 164, 167, 179, 182, 404
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	542
TspRI	CASTG	2 cut(s)	75, 202
VpaK11BI	GGWCC	2 cut(s)	271, 467
XceI	RCATGY	3 cut(s)	377, 480, 509
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.