Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Reverse (-)

38265329 .. 38267808

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1250300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCTACTGCTGCAGTCACCTCCTTCTCTCTGTTTAGGAATTGTGCAGCAACAACTGTGAGAGCTTTTGTGACAGTGAAAGCCTCCAACCCCAATTTCACAACTTCCCTTCTTCCTCTCCACTCTCGCAGATCCCTGTGCCGTGTTAGCGCTACAAACAACGAGGAGGCTGCTGCAAAGGTAGCTGCAGTGAATGCTGACACTGGAGCTCCAACAATATTTGACAAGATCATAGCTAAGGAAATCCCATCAAGCATTGTATATGAGGATGATCTGGTCCTGGCATTTCGTGATATCAATCCACAGGCTCCTGTTCACGTTTTAGTCATCCCAAAGTTCAGGGATGGATTAACCAGCCTGGGAAAGGCTGAACTAAGGCACACGGAAATACTAGGCCAACTTCTCCATGCTGCGAAAATTGTGGCTGAGAGAGAAGGTATTCTTGACGGATTTCGTGTGGTTATCAACAATGGTGCAGAAGCATGTCAATCCGTTTATCATCTCCACTTGCACGTCCTTGGCGGAAGACAGCTGAAATGGCCGCCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

184

Amino Acids

19.76

Weight (kDa)

8.88

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	72 - 174	5e-23	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	80 - 177	3.1e-28	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	522, 542
AclWI	GGATC	1 cut(s)	126
AcoI	YGGCCR	1 cut(s)	539
AfeI	AGCGCT	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	364
AjiI	CACGTC	1 cut(s)	514
AjnI	CCWGG	3 cut(s)	279, 357, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	5 cut(s)	65, 185, 209, 236, 532
AluI	AGCT	5 cut(s)	65, 185, 209, 236, 532
Alw21I	GWGCWC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	126
Aor51HI	AGCGCT	1 cut(s)	151
AoxI	GGCC	2 cut(s)	394, 539
ApeKI	GCWGC	6 cut(s)	11, 47, 170, 173, 185, 410
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	532
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	5 cut(s)	59, 157, 160, 172, 397
BccI	CCATC	2 cut(s)	256, 338
BceAI	ACGGC	1 cut(s)	126
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	3 cut(s)	281, 359, 546
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	2 cut(s)	12, 186
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	7 cut(s)	12, 48, 171, 174, 186, 411, 542
BlsI	GCNGC	7 cut(s)	13, 49, 172, 175, 187, 412, 543
Bme1390I	CCNGG	3 cut(s)	281, 359, 546
Bme18I	GGWCC	1 cut(s)	277
BmgBI	CACGTC	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	3 cut(s)	281, 359, 546
BpiI	GAAGAC	1 cut(s)	532
BpmI	CTGGAG	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	237
BsaBI	GATNNNNATC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	358, 517
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	208
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	3 cut(s)	281, 359, 546
BseDI	CCNNGG	2 cut(s)	358, 517
BseGI	GGATG	3 cut(s)	274, 327, 349
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	5 cut(s)	59, 157, 160, 172, 397
BsgI	GTGCAG	2 cut(s)	66, 495
BshFI	GGCC	2 cut(s)	396, 541
BsiHKAI	GWGCWC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	396, 541
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	3 cut(s)	131, 228, 271
BspACI	CCGC	2 cut(s)	522, 542
BspANI	GGCC	2 cut(s)	396, 541
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	2 cut(s)	16, 190
BspPI	GGATC	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	358, 517
BssMI	GATC	3 cut(s)	131, 228, 271
BssT1I	CCWWGG	1 cut(s)	517
Bst2UI	CCWGG	3 cut(s)	281, 359, 546
Bst4CI	ACNGT	2 cut(s)	58, 76
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	237, 374, 426
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	3 cut(s)	274, 327, 349
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	3 cut(s)	134, 231, 274
BstMBI	GATC	3 cut(s)	131, 228, 271
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 147, 182, 194, 538
BstNI	CCWGG	3 cut(s)	281, 359, 546
BstNSI	RCATGY	1 cut(s)	486
BstSCI	CCNGG	3 cut(s)	279, 357, 544
BstSFI	CTRYAG	2 cut(s)	12, 186
BstV1I	GCAGC	5 cut(s)	59, 157, 160, 172, 397
BstV2I	GAAGAC	1 cut(s)	532
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	396, 541
BtrI	CACGTC	1 cut(s)	514
BtsCI	GGATG	3 cut(s)	274, 327, 349
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	3 cut(s)	81, 195, 201
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	2 cut(s)	407, 483
DdeI	CTNAG	3 cut(s)	237, 374, 426
DpnI	GATC	3 cut(s)	133, 230, 273
DpnII	GATC	3 cut(s)	131, 228, 271
EaeI	YGGCCR	1 cut(s)	539
EciI	GGCGGA	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	517
Eco24I	GRGCYC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	277
Eco47III	AGCGCT	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRII	CCWGG	3 cut(s)	279, 357, 544
EcoRV	GATATC	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	2 cut(s)	410, 486
FaiI	YATR	5 cut(s)	233, 262, 264, 408, 484
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	2 cut(s)	406, 482
Fnu4HI	GCNGC	7 cut(s)	12, 48, 171, 174, 186, 411, 542
FokI	GGATG	3 cut(s)	281, 314, 356
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	7 cut(s)	12, 48, 171, 174, 186, 411, 542
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	7 cut(s)	12, 48, 171, 174, 186, 411, 542
GsuI	CTGGAG	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	396, 541
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	410, 486
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188III	TCNNGA	2 cut(s)	290, 443
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	3 cut(s)	34, 119, 428
HpyCH4III	ACNGT	2 cut(s)	58, 76
HpyCH4IV	ACGT	2 cut(s)	318, 513
HpyCH4V	TGCA	6 cut(s)	14, 47, 176, 188, 476, 511
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 147, 182, 194, 538
HpyF3I	CTNAG	3 cut(s)	237, 374, 426
HpySE526I	ACGT	2 cut(s)	318, 513
Hsp92II	CATG	2 cut(s)	410, 486
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	131, 228, 271
LmnI	GCTCC	3 cut(s)	206, 214, 313
Lsp1109I	GCAGC	5 cut(s)	59, 157, 160, 172, 397
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	2 cut(s)	318, 513
MaeIII	GTNAC	2 cut(s)	16, 70
MalI	GATC	3 cut(s)	133, 230, 273
MboI	GATC	3 cut(s)	131, 228, 271
MboII	GAAGA	2 cut(s)	104, 537
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	3 cut(s)	40, 94, 417
MmeI	TCCRAC	2 cut(s)	111, 236
MnlI	CCTC	6 cut(s)	31, 94, 126, 157, 160, 259
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	532
MspR9I	CCNGG	3 cut(s)	281, 359, 546
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	3 cut(s)	281, 359, 546
MwoI	GCNNNNNNNGC	5 cut(s)	11, 147, 182, 194, 538
NdeII	GATC	3 cut(s)	131, 228, 271
NlaIII	CATG	2 cut(s)	410, 486
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	2 cut(s)	16, 70
NspI	RCATGY	1 cut(s)	486
PctI	GAATGC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	438
PkrI	GCNGC	7 cut(s)	13, 49, 172, 175, 187, 412, 543
Psp124BI	GAGCTC	1 cut(s)	211
Psp6I	CCWGG	3 cut(s)	279, 357, 544
PspGI	CCWGG	3 cut(s)	279, 357, 544
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	277
PstI	CTGCAG	2 cut(s)	16, 190
PsuI	RGATCY	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	7 cut(s)	12, 48, 171, 174, 186, 411, 542
Sau3AI	GATC	3 cut(s)	131, 228, 271
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	3 cut(s)	281, 359, 546
SduI	GDGCHC	1 cut(s)	211
SfcI	CTRYAG	2 cut(s)	12, 186
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	3 cut(s)	40, 94, 417
SsiI	CCGC	2 cut(s)	522, 542
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	3 cut(s)	279, 357, 544
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	2 cut(s)	58, 76
TaiI	ACGT	2 cut(s)	321, 516
TasI	AATT	3 cut(s)	40, 94, 417
TauI	GCSGC	1 cut(s)	544
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	3 cut(s)	81, 195, 208
TseFI	GTSAC	2 cut(s)	16, 70
TseI	GCWGC	6 cut(s)	11, 47, 170, 173, 185, 410
Tsp45I	GTSAC	2 cut(s)	16, 70
TspGWI	ACGGA	3 cut(s)	398, 462, 481
TspRI	CASTG	3 cut(s)	81, 195, 208
VpaK11BI	GGWCC	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	362
XceI	RCATGY	1 cut(s)	486
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.