Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Forward (+)

9073204 .. 9074832

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTTTTGGTTTTGGTTTGAAATCTGGAACAGGAACTGTGCATCAACAACTGCGAGAACTTTTGTGACTGTGAAAGCCTCCAACCCCAATTTCAGAACTTTCCTTCTTCCTCTTCACTCTCGCAGGTCCCTGTGGCGTGTTAGTGCTACAAACAATGAAGAGGCTGCTGTCAAGGTAGCTGCAGCAAATGCTGACAGAGGAGCTCCAACAATATTTGACAAGATCATAGCAAAGGAAATCCCATCGACCATTGTATACGAGGATGATAAGGTCCTGGCATTTCGGGATATCAACCCACAGGCTCCTGTGCATGTTGTTATCATCCCAAAGAATAGGGATGGGTTAACAGAGCTGGGAAAGGTAACATCTGGCCATTTTTCTACCAAACCTTCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

132

Amino Acids

14.85

Weight (kDa)

9.56

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	70 - 126	1.2e-11	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	78 - 122	6.2e-11	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	370
AgsI	TTSAA	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	3 cut(s)	179, 203, 352
AluI	AGCT	3 cut(s)	179, 203, 352
Alw21I	GWGCWC	1 cut(s)	205
AlwNI	CAGNNNCTG	1 cut(s)	36
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	3 cut(s)	164, 179, 182
AspS9I	GGNCC	2 cut(s)	126, 271
AvaII	GGWCC	2 cut(s)	126, 271
BalI	TGGCCA	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	151, 166, 194
BccI	CCATC	2 cut(s)	250, 332
BciT130I	CCWGG	1 cut(s)	275
BfaI	CTAG	1 cut(s)	397
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	3 cut(s)	165, 180, 183
BlsI	GCNGC	3 cut(s)	166, 181, 184
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	2 cut(s)	126, 271
BmgT120I	GGNCC	2 cut(s)	126, 271
BmiI	GGNNCC	2 cut(s)	128, 303
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	275
BseGI	GGATG	3 cut(s)	268, 321, 343
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	151, 166, 194
BseYI	CCCAGC	1 cut(s)	352
BshFI	GGCC	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	372
BspLI	GGNNCC	2 cut(s)	128, 303
BspMAI	CTGCAG	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	114
BssMI	GATC	1 cut(s)	222
BssNAI	GTATAC	1 cut(s)	256
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	38, 70
Bst6I	CTCTTC	2 cut(s)	117, 153
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstF5I	GGATG	3 cut(s)	268, 321, 343
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	151, 166, 194
BstZ17I	GTATAC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	268, 321, 343
BveI	ACCTGC	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	126, 271
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	7 cut(s)	77, 164, 179, 203, 302, 352, 372
CviKI_1	RGCY	7 cut(s)	77, 164, 179, 203, 302, 352, 372
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	370
Eam1104I	CTCTTC	2 cut(s)	117, 153
EarI	CTCTTC	2 cut(s)	117, 153
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	126, 271
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoO109I	RGGNCCY	2 cut(s)	126, 271
EcoRII	CCWGG	1 cut(s)	273
EcoRV	GATATC	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	205
FaeI	CATG	1 cut(s)	314
FaiI	YATR	3 cut(s)	227, 256, 312
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	165, 180, 183
FokI	GGATG	3 cut(s)	275, 308, 350
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	3 cut(s)	165, 180, 183
FspBI	CTAG	1 cut(s)	397
GluI	GCNGC	3 cut(s)	165, 180, 183
GsaI	CCCAGC	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	372
Hin1II	CATG	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HpaI	GTTAAC	1 cut(s)	345
Hpy166II	GTNNAC	2 cut(s)	256, 345
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	2 cut(s)	25, 284
Hpy8I	GTNNAC	2 cut(s)	256, 345
HpyAV	CCTTC	2 cut(s)	113, 399
HpyCH4III	ACNGT	2 cut(s)	38, 70
HpyCH4V	TGCA	3 cut(s)	41, 182, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	314
KspAI	GTTAAC	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	3 cut(s)	200, 208, 307
Lsp1109I	GCAGC	3 cut(s)	151, 166, 194
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	397
MaeIII	GTNAC	2 cut(s)	64, 361
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	3 cut(s)	98, 104, 170
MhlI	GDGCHC	1 cut(s)	205
MlsI	TGGCCA	1 cut(s)	372
MluCI	AATT	1 cut(s)	88
MluNI	TGGCCA	1 cut(s)	372
MmeI	TCCRAC	2 cut(s)	105, 230
MnlI	CCTC	5 cut(s)	88, 120, 154, 191, 253
Mox20I	TGGCCA	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	372
MseI	TTAA	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	372
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	2 cut(s)	128, 303
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	166, 181, 184
PpuMI	RGGWCCY	2 cut(s)	126, 271
Psp124BI	GAGCTC	1 cut(s)	205
Psp5II	RGGWCCY	2 cut(s)	126, 271
Psp6I	CCWGG	1 cut(s)	273
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	128, 303
PspPI	GGNCC	2 cut(s)	126, 271
PspPPI	RGGWCCY	2 cut(s)	126, 271
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	36
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	3 cut(s)	165, 180, 183
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	2 cut(s)	126, 271
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	8 cut(s)	128, 177, 181, 205, 273, 354, 363, 391
SfaNI	GCATC	1 cut(s)	50
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	2 cut(s)	126, 271
Sse9I	AATT	1 cut(s)	88
SspI	AATATT	1 cut(s)	213
SspMI	CTAG	1 cut(s)	397
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	38, 70
TaqI	TCGA	1 cut(s)	245
TasI	AATT	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	3 cut(s)	164, 179, 182
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	171
VpaK11BI	GGWCC	2 cut(s)	126, 271
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.