Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Forward (+)

18833936 .. 18834427

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1229700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCTACTGCTGCAGTCACCTCATTCTCACTGTTTAGGAATTGTGCAGCAACAACTGTGAGAGCTTTTGTGACAATGAAAGCCTCCAACACCAATTTCACAACTTCCCTTCTTCCTCTGCACTCTCACAGATCCATGTGCCGTGTTAGCGCTACAAACAACGAGGAGGCTACTGCAAAGGTAGCTGCAGTGAATGCCGACACTAGAGCTCCAAAAATATTTGACAAGATCATATCTAAGGAAATCCCATCAAGCATTGTATATGAGGATGATCTGATCTTGACATTTCGTGATATCAATCTGCAGGCTCCTGTTCACGTTTTAGTCATCCCAAAGCTCAGGGATGGATTAACCGGCCTGGGAAAGGTAATCTATGGCCCTTTTTTGTCACCTGGGCGACCAACTTTCCGAGCAGACCTCGATCTTCAGCCTCCGTCTCTGGATTATTGTTGGGGCGCAGACAACCTCTCTTCTCTTTCTCTCAGTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

164

Amino Acids

17.7

Weight (kDa)

8.51

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	73 - 112	8.3e-08	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	80 - 112	9.5e-08	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	410
AfeI	AGCGCT	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	364
AjnI	CCWGG	2 cut(s)	357, 391
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	4 cut(s)	65, 185, 209, 337
AluI	AGCT	4 cut(s)	65, 185, 209, 337
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	126
Aor51HI	AGCGCT	1 cut(s)	151
AoxI	GGCC	2 cut(s)	355, 376
ApeKI	GCWGC	3 cut(s)	11, 47, 185
AspLEI	GCGC	2 cut(s)	152, 458
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	2 cut(s)	10, 381
BanII	GRGCYC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	59, 172
BccI	CCATC	2 cut(s)	256, 338
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	2 cut(s)	359, 393
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	3 cut(s)	12, 186, 302
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	3 cut(s)	12, 48, 186
BlsI	GCNGC	3 cut(s)	13, 49, 187
Bme1390I	CCNGG	2 cut(s)	359, 393
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	359, 393
BplI	GAGNNNNNCTC	2 cut(s)	402, 434
Bpu10I	CCTNAGC	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	358, 392
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse118I	RCCGGY	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	359, 393
BseDI	CCNNGG	2 cut(s)	358, 392
BseGI	GGATG	3 cut(s)	274, 327, 349
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	59, 172
BsgI	GTGCAG	2 cut(s)	66, 104
BshFI	GGCC	2 cut(s)	357, 378
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	441
BsmBI	CGTCTC	1 cut(s)	441
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	357, 378
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	5 cut(s)	131, 228, 271, 276, 421
BspANI	GGCC	2 cut(s)	357, 378
BspCNI	CTCAG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	3 cut(s)	16, 190, 306
BspPI	GGATC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	358, 392
BssMI	GATC	5 cut(s)	131, 228, 271, 276, 421
Bst2UI	CCWGG	2 cut(s)	359, 393
Bst4CI	ACNGT	2 cut(s)	33, 58
Bst6I	CTCTTC	1 cut(s)	475
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	3 cut(s)	237, 338, 482
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	3 cut(s)	274, 327, 349
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	152, 458
BstKTI	GATC	5 cut(s)	134, 231, 274, 279, 424
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	5 cut(s)	131, 228, 271, 276, 421
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 147, 182, 194
BstNI	CCWGG	2 cut(s)	359, 393
BstSCI	CCNGG	2 cut(s)	357, 391
BstSFI	CTRYAG	3 cut(s)	12, 186, 302
BstV1I	GCAGC	2 cut(s)	59, 172
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	357, 378
BtsCI	GGATG	3 cut(s)	274, 327, 349
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	29, 195
Cac8I	GCNNGC	1 cut(s)	306
CfoI	GCGC	2 cut(s)	152, 458
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	377
CviAII	CATG	1 cut(s)	136
DdeI	CTNAG	3 cut(s)	237, 338, 482
DpnI	GATC	5 cut(s)	133, 230, 273, 278, 423
DpnII	GATC	5 cut(s)	131, 228, 271, 276, 421
Eam1104I	CTCTTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	475
Ecl136II	GAGCTC	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	295
Eco47III	AGCGCT	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	357, 391
EcoRV	GATATC	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	441
FaeI	CATG	1 cut(s)	139
FaiI	YATR	5 cut(s)	137, 233, 262, 264, 375
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	12, 48, 186
FokI	GGATG	3 cut(s)	281, 314, 356
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	3 cut(s)	12, 48, 186
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	2 cut(s)	151, 457
GluI	GCNGC	3 cut(s)	12, 48, 186
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	357, 378
HapII	CCGG	1 cut(s)	354
HhaI	GCGC	2 cut(s)	152, 458
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	2 cut(s)	150, 456
HinP1I	GCGC	2 cut(s)	150, 456
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	2 cut(s)	10, 381
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	2 cut(s)	276, 410
Hpy188III	TCNNGA	3 cut(s)	280, 290, 440
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	2 cut(s)	33, 58
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	6 cut(s)	14, 47, 121, 176, 188, 304
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 147, 182, 194
HpyF3I	CTNAG	3 cut(s)	237, 338, 482
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	2 cut(s)	150, 456
Kzo9I	GATC	5 cut(s)	131, 228, 271, 276, 421
LmnI	GCTCC	2 cut(s)	214, 313
LpnPI	CCDG	9 cut(s)	290, 324, 325, 344, 367, 371, 378, 405, 425
Lsp1109I	GCAGC	2 cut(s)	59, 172
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	3 cut(s)	16, 70, 387
MalI	GATC	5 cut(s)	133, 230, 273, 278, 423
MboI	GATC	5 cut(s)	131, 228, 271, 276, 421
MboII	GAAGA	3 cut(s)	104, 416, 462
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	2 cut(s)	40, 94
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	9 cut(s)	31, 94, 126, 157, 160, 259, 428, 441, 476
MseI	TTAA	2 cut(s)	350, 490
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	2 cut(s)	359, 393
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	2 cut(s)	359, 393
MwoI	GCNNNNNNNGC	4 cut(s)	11, 147, 182, 194
NdeII	GATC	5 cut(s)	131, 228, 271, 276, 421
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	16, 70, 387
PctI	GAATGC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	13, 49, 187
Psp124BI	GAGCTC	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	357, 391
PspGI	CCWGG	2 cut(s)	357, 391
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	377
PstI	CTGCAG	3 cut(s)	16, 190, 306
PsuI	RGATCY	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	211
SaqAI	TTAA	2 cut(s)	350, 490
SatI	GCNGC	3 cut(s)	12, 48, 186
Sau3AI	GATC	5 cut(s)	131, 228, 271, 276, 421
Sau96I	GGNCC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	359, 393
SduI	GDGCHC	1 cut(s)	211
SfcI	CTRYAG	3 cut(s)	12, 186, 302
Sse9I	AATT	2 cut(s)	40, 94
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	1 cut(s)	204
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	2 cut(s)	357, 391
TaaI	ACNGT	2 cut(s)	33, 58
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	420
TasI	AATT	2 cut(s)	40, 94
Tru1I	TTAA	2 cut(s)	350, 490
Tru9I	TTAA	2 cut(s)	350, 490
TscAI	CASTG	2 cut(s)	36, 195
TseFI	GTSAC	3 cut(s)	16, 70, 387
TseI	GCWGC	3 cut(s)	11, 47, 185
Tsp45I	GTSAC	3 cut(s)	16, 70, 387
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	2 cut(s)	36, 195
XagI	CCTNNNNNAGG	1 cut(s)	362
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.