Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002087.1

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Reverse (-)

4791 .. 6178

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002087.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atggttcttaggtccctgtgtcgtgttagcgctacaaacaatgaagaggctgctgccaaggtagctgcagcaaatgctgacagaggagctccaacaatatttgacaagatcatagcaaaggaaatcccatcaaccattgtatacgaggatgataaggtcctggcatttcgggatatcaacccacaggctcctgtgcatgttgttattatcccaaagaatagggatgggttaacagagctgggaaaggctgaatctaggcatatggaaatattgggtcaacttctgtatgctgcaaaaaaagttgctgagaaagaaggtattcttcacgggtttcgtgtggttatcaacaatggtccagagggatgtcaatctgtttatcatctccacttgcatctccttggtgggagacagatgaaatggccacctggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

143

Amino Acids

15.67

Weight (kDa)

8.59

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	141
AcoI	YGGCCR	1 cut(s)	419
AfeI	AGCGCT	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	159, 424
AluBI	AGCT	3 cut(s)	65, 89, 238
AluI	AGCT	3 cut(s)	65, 89, 238
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	400
Aor51HI	AGCGCT	1 cut(s)	31
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	5 cut(s)	50, 53, 65, 68, 290
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	3 cut(s)	12, 157, 353
AvaII	GGWCC	3 cut(s)	12, 157, 353
BalI	TGGCCA	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	5 cut(s)	37, 40, 52, 80, 277
BccI	CCATC	2 cut(s)	136, 218
BciT130I	CCWGG	2 cut(s)	161, 426
BcoDI	GTCTC	1 cut(s)	400
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	5 cut(s)	51, 54, 66, 69, 291
BlsI	GCNGC	5 cut(s)	52, 55, 67, 70, 292
Bme1390I	CCNGG	2 cut(s)	161, 426
Bme18I	GGWCC	3 cut(s)	12, 157, 353
BmgT120I	GGNCC	3 cut(s)	12, 157, 353
BmiI	GGNNCC	2 cut(s)	14, 189
BmrFI	CCNGG	2 cut(s)	161, 426
BmsI	GCATC	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	57, 397
Bse8I	GATNNNNATC	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	161, 426
BseDI	CCNNGG	2 cut(s)	57, 397
BseGI	GGATG	3 cut(s)	154, 229, 368
BseJI	GATNNNNATC	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	297
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	5 cut(s)	37, 40, 52, 80, 277
BseYI	CCCAGC	1 cut(s)	238
BshFI	GGCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	14, 189
BspMAI	CTGCAG	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	57, 397
BssMI	GATC	1 cut(s)	108
BssNAI	GTATAC	1 cut(s)	142
BssT1I	CCWWGG	2 cut(s)	57, 397
Bst1107I	GTATAC	1 cut(s)	142
Bst2UI	CCWGG	2 cut(s)	161, 426
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	8, 306
BstF5I	GGATG	3 cut(s)	154, 229, 368
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 74
BstNI	CCWGG	2 cut(s)	161, 426
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	159, 424
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	5 cut(s)	37, 40, 52, 80, 277
BstZ17I	GTATAC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	421
BtsCI	GGATG	3 cut(s)	154, 229, 368
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	12, 157, 353
CsiI	ACCWGGT	1 cut(s)	424
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	7 cut(s)	50, 65, 89, 188, 238, 248, 421
CviKI_1	RGCY	7 cut(s)	50, 65, 89, 188, 238, 248, 421
DdeI	CTNAG	2 cut(s)	8, 306
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	419
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	57, 397
Eco24I	GRGCYC	1 cut(s)	91
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	3 cut(s)	12, 157, 353
Eco47III	AGCGCT	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	89
EcoO109I	RGGNCCY	2 cut(s)	12, 157
EcoRII	CCWGG	2 cut(s)	159, 424
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	2 cut(s)	57, 397
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	2 cut(s)	57, 397
FaeI	CATG	1 cut(s)	200
FaiI	YATR	6 cut(s)	113, 142, 198, 261, 263, 288
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	1 cut(s)	196
FauNDI	CATATG	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	51, 54, 66, 69, 291
FokI	GGATG	3 cut(s)	161, 236, 375
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	5 cut(s)	51, 54, 66, 69, 291
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	5 cut(s)	51, 54, 66, 69, 291
GsaI	CCCAGC	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	421
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	2 cut(s)	231, 278
HindII	GTYRAC	2 cut(s)	231, 278
HinfI	GANTC	1 cut(s)	251
HpaI	GTTAAC	1 cut(s)	231
Hpy166II	GTNNAC	3 cut(s)	142, 231, 278
Hpy188III	TCNNGA	2 cut(s)	170, 356
Hpy8I	GTNNAC	3 cut(s)	142, 231, 278
HpyAV	CCTTC	1 cut(s)	308
HpyCH4V	TGCA	4 cut(s)	68, 196, 293, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 74
HpyF3I	CTNAG	2 cut(s)	8, 306
Hsp92II	CATG	1 cut(s)	200
HspAI	GCGC	1 cut(s)	30
KspAI	GTTAAC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	3 cut(s)	86, 94, 193
LpnPI	CCDG	8 cut(s)	29, 146, 170, 173, 204, 224, 369, 411
Lsp1109I	GCAGC	5 cut(s)	37, 40, 52, 80, 277
LweI	GCATC	1 cut(s)	400
MabI	ACCWGGT	1 cut(s)	424
MaeI	CTAG	1 cut(s)	255
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	2 cut(s)	56, 314
MhlI	GDGCHC	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	421
MluNI	TGGCCA	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	4 cut(s)	40, 77, 139, 352
Mox20I	TGGCCA	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	421
MseI	TTAA	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	421
MspR9I	CCNGG	2 cut(s)	161, 426
MvaI	CCWGG	2 cut(s)	161, 426
MwoI	GCNNNNNNNGC	2 cut(s)	62, 74
NdeI	CATATG	1 cut(s)	261
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	2 cut(s)	14, 189
NspI	RCATGY	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	5 cut(s)	52, 55, 67, 70, 292
PpuMI	RGGWCCY	2 cut(s)	12, 157
Psp124BI	GAGCTC	1 cut(s)	91
Psp5II	RGGWCCY	2 cut(s)	12, 157
Psp6I	CCWGG	2 cut(s)	159, 424
PspFI	CCCAGC	1 cut(s)	238
PspGI	CCWGG	2 cut(s)	159, 424
PspN4I	GGNNCC	2 cut(s)	14, 189
PspPI	GGNCC	3 cut(s)	12, 157, 353
PspPPI	RGGWCCY	2 cut(s)	12, 157
PstI	CTGCAG	1 cut(s)	70
SacI	GAGCTC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	5 cut(s)	51, 54, 66, 69, 291
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	3 cut(s)	12, 157, 353
ScrFI	CCNGG	2 cut(s)	161, 426
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	8 cut(s)	14, 63, 67, 91, 159, 240, 319, 427
SexAI	ACCWGGT	1 cut(s)	424
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	3 cut(s)	12, 157, 353
SspI	AATATT	2 cut(s)	99, 270
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	2 cut(s)	159, 424
StyI	CCWWGG	2 cut(s)	57, 397
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseI	GCWGC	5 cut(s)	50, 53, 65, 68, 290
TspDTI	ATGAA	2 cut(s)	57, 428
VpaK11BI	GGWCC	3 cut(s)	12, 157, 353
XceI	RCATGY	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.