Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Reverse (-)

38491076 .. 38492722

Gene Structure 1647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00358390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTTTTGGTTTTGGTTTGAAATTTGGAACAGGAACTGTGCAGCAACAAATGTGAGAGCTTTTATGACTGTGAAAGCCTCCAACCCCAATTTCAGAACTTTCCTTCTTCCTCTTCACTCTCGCAGGTCCCTGTGTCGTGTTAGCGCTACAAACAATGAAGAGGCTGCTGCCAAGGTAGCTGCAGCAAATGCCGACAGAGGAGCTCTAACAATATATGACAATATCATAGCAAAGGAAATCCCATCGACCATTGTATACGAGGATGATAAGGTCTTGGCATTTCAGGATATCAACCCACAGGCTCCTGTGCATGTTGTTATCATCCCAAAGAATAGGGATGGGTTAACAGAGCTGGGAAAGGTAACATCTGGCCATTTTTCTACCAAGCTTGCTTATTCTTACATTAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

137

Amino Acids

15.39

Weight (kDa)

9.0

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	71 - 126	4.7e-11	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	78 - 122	1.7e-10	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	21
AfeI	AGCGCT	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	20
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	5 cut(s)	59, 179, 203, 352, 388
AluI	AGCT	5 cut(s)	59, 179, 203, 352, 388
Alw21I	GWGCWC	1 cut(s)	205
AlwNI	CAGNNNCTG	1 cut(s)	36
Aor51HI	AGCGCT	1 cut(s)	145
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	5 cut(s)	41, 164, 167, 179, 182
ApoI	RAATTY	1 cut(s)	21
AseI	ATTAAT	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	5 cut(s)	53, 151, 154, 166, 194
BccI	CCATC	2 cut(s)	250, 332
BfmI	CTRYAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	5 cut(s)	42, 165, 168, 180, 183
BlsI	GCNGC	5 cut(s)	43, 166, 169, 181, 184
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	2 cut(s)	128, 303
BsaJI	CCNNGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	3 cut(s)	268, 321, 343
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	5 cut(s)	53, 151, 154, 166, 194
BseYI	CCCAGC	1 cut(s)	352
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	372
BspLI	GGNNCC	2 cut(s)	128, 303
BspMAI	CTGCAG	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	171
BssNAI	GTATAC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	171
Bst1107I	GTATAC	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	38, 70
Bst6I	CTCTTC	2 cut(s)	117, 153
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	390
BstF5I	GGATG	3 cut(s)	268, 321, 343
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 188
BstNSI	RCATGY	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	5 cut(s)	53, 151, 154, 166, 194
BstZ17I	GTATAC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	268, 321, 343
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	390
CaiI	CAGNNNCTG	1 cut(s)	36
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	126
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	9 cut(s)	59, 77, 164, 179, 203, 302, 352, 372, 388
CviKI_1	RGCY	9 cut(s)	59, 77, 164, 179, 203, 302, 352, 372, 388
EaeI	YGGCCR	1 cut(s)	370
Eam1104I	CTCTTC	2 cut(s)	117, 153
EarI	CTCTTC	2 cut(s)	117, 153
Ecl136II	GAGCTC	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	126
Eco47III	AGCGCT	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	1 cut(s)	314
FaiI	YATR	6 cut(s)	65, 214, 216, 227, 256, 312
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	5 cut(s)	42, 165, 168, 180, 183
FokI	GGATG	3 cut(s)	275, 308, 350
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	5 cut(s)	42, 165, 168, 180, 183
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	5 cut(s)	42, 165, 168, 180, 183
GsaI	CCCAGC	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	372
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	386
HpaI	GTTAAC	1 cut(s)	345
Hpy166II	GTNNAC	2 cut(s)	256, 345
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	2 cut(s)	256, 345
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	38, 70
HpyCH4V	TGCA	3 cut(s)	41, 182, 310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 188
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	1 cut(s)	144
KspAI	GTTAAC	1 cut(s)	345
LmnI	GCTCC	2 cut(s)	200, 307
LpnPI	CCDG	8 cut(s)	16, 109, 143, 269, 284, 318, 338, 354
Lsp1109I	GCAGC	5 cut(s)	53, 151, 154, 166, 194
MaeIII	GTNAC	1 cut(s)	361
MboII	GAAGA	3 cut(s)	98, 104, 170
MhlI	GDGCHC	1 cut(s)	205
MlsI	TGGCCA	1 cut(s)	372
MluCI	AATT	2 cut(s)	21, 88
MluNI	TGGCCA	1 cut(s)	372
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	5 cut(s)	88, 120, 154, 191, 253
Mox20I	TGGCCA	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	372
MseI	TTAA	3 cut(s)	344, 405, 412
Msp20I	TGGCCA	1 cut(s)	372
MwoI	GCNNNNNNNGC	2 cut(s)	176, 188
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	2 cut(s)	128, 303
NspI	RCATGY	1 cut(s)	314
PkrI	GCNGC	5 cut(s)	43, 166, 169, 181, 184
PpuMI	RGGWCCY	1 cut(s)	126
PshBI	ATTAAT	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	128, 303
PspPI	GGNCC	1 cut(s)	126
PspPPI	RGGWCCY	1 cut(s)	126
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	36
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	3 cut(s)	344, 405, 412
SatI	GCNGC	5 cut(s)	42, 165, 168, 180, 183
Sau96I	GGNCC	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	9 cut(s)	61, 128, 177, 181, 205, 273, 354, 363, 390
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	126
Sse9I	AATT	2 cut(s)	21, 88
SstI	GAGCTC	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	38, 70
TaqI	TCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	21, 88
Tru1I	TTAA	3 cut(s)	344, 405, 412
Tru9I	TTAA	3 cut(s)	344, 405, 412
TseI	GCWGC	5 cut(s)	41, 164, 167, 179, 182
TspDTI	ATGAA	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	126
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	1 cut(s)	21
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.