AT1G31170

Sulfiredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002026
Physical Location & Seq
Forward (+)
11133410 .. 11135189
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31170.2

Sequence Viewer

Length: 378 bp
ATGGCGAATTTGATGATGAGATTACCAATTAGCTTGAGAAGCTTCTCTGTTTCAGCTTCTTCATCCAACGGTTCGCCGCCGGTGATCGGAGGATCTAGCGGCGGTGTAGGACCGATGATTGTGGAATTACCGTTGGAGAAGATACGAAGACCGTTGATGCGAACCAGATCCAACGATCAGAACAAAGTGAAAGAGCTTATGGATAGTATCCGTCAAATCGGTCTTCAAGTTCCGATTGATGTGATTGAAGTTGATGGAACTTACTATGGGTTCTCGGGATGTCACAGATACGAGGCGCATCAGAAGCTAGGGCTTCCAACTATACGTTGCAAAATCCGTAAAGGAACAAAGGAAACATTAAGGCATCATCTTCGCTGA

Protein Analysis

125

Amino Acids

13.91

Weight (kDa)

10.17

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ParB_N PF02195 40 - 123 1.2e-17 ParB N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 77, 99, 102
AclWI GGATC 2 cut(s) 100, 162
AcsI RAATTY 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 2 cut(s) 227, 248
AluBI AGCT 5 cut(s) 33, 42, 56, 196, 307
AluI AGCT 5 cut(s) 33, 42, 56, 196, 307
AlwI GGATC 2 cut(s) 100, 162
Ama87I CYCGRG 1 cut(s) 274
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 274
AvaII GGWCC 1 cut(s) 110
BbsI GAAGAC 2 cut(s) 154, 215
BccI CCATC 1 cut(s) 248
BcgI CGANNNNNNTGC 1 cut(s) 353
BciVI GTATCC 1 cut(s) 218
BfaI CTAG 2 cut(s) 96, 308
BfuI GTATCC 1 cut(s) 218
BisI GCNGC 2 cut(s) 77, 100
BlsI GCNGC 2 cut(s) 78, 101
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 110
BmsI GCATC 3 cut(s) 147, 307, 373
BpiI GAAGAC 2 cut(s) 154, 215
BpuEI CTTGAG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 79
BseGI GGATG 2 cut(s) 62, 284
BseLI CCNNNNNNNGG 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 274
Bsp143I GATC 4 cut(s) 84, 92, 167, 175
BspACI CCGC 3 cut(s) 77, 99, 102
BspPI GGATC 2 cut(s) 100, 162
BsrFI RCCGGY 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 79
BssMI GATC 4 cut(s) 84, 92, 167, 175
Bst4CI ACNGT 3 cut(s) 71, 132, 153
BstF5I GGATG 2 cut(s) 62, 284
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 4 cut(s) 87, 95, 170, 178
BstMBI GATC 4 cut(s) 84, 92, 167, 175
BstMWI GCNNNNNNNGC 2 cut(s) 39, 304
BstV2I GAAGAC 2 cut(s) 154, 215
BstX2I RGATCY 2 cut(s) 92, 167
BstYI RGATCY 2 cut(s) 92, 167
BsuI GTATCC 1 cut(s) 218
BtsCI GGATG 2 cut(s) 62, 284
CfoI GCGC 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 110
CviJI RGCY 6 cut(s) 33, 42, 56, 196, 307, 313
CviKI_1 RGCY 6 cut(s) 33, 42, 56, 196, 307, 313
DpnI GATC 4 cut(s) 86, 94, 169, 177
DpnII GATC 4 cut(s) 84, 92, 167, 175
Eco47I GGWCC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 274
FaiI YATR 3 cut(s) 200, 267, 323
Fnu4HI GCNGC 2 cut(s) 77, 100
FokI GGATG 2 cut(s) 49, 291
Fsp4HI GCNGC 2 cut(s) 77, 100
FspBI CTAG 2 cut(s) 96, 308
GlaI GCGC 1 cut(s) 297
GluI GCNGC 2 cut(s) 77, 100
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 298
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 40
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 4 cut(s) 89, 180, 234, 303
Hpy188III TCNNGA 1 cut(s) 276
HpyCH4III ACNGT 3 cut(s) 71, 132, 153
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 304
HpySE526I ACGT 1 cut(s) 325
HspAI GCGC 1 cut(s) 296
Kzo9I GATC 4 cut(s) 84, 92, 167, 175
LpnPI CCDG 2 cut(s) 93, 178
LweI GCATC 3 cut(s) 147, 307, 373
MaeI CTAG 2 cut(s) 96, 308
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 281
MalI GATC 4 cut(s) 86, 94, 169, 177
MboI GATC 4 cut(s) 84, 92, 167, 175
MboII GAAGA 5 cut(s) 51, 151, 159, 215, 362
MflI RGATCY 2 cut(s) 92, 167
MluCI AATT 3 cut(s) 7, 27, 125
MmeI TCCRAC 4 cut(s) 90, 114, 195, 341
MnlI CCTC 2 cut(s) 83, 286
MseI TTAA 1 cut(s) 359
MspI CCGG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 39, 304
NdeII GATC 4 cut(s) 84, 92, 167, 175
NmuCI GTSAC 1 cut(s) 281
PkrI GCNGC 2 cut(s) 78, 101
PspPI GGNCC 1 cut(s) 110
PsuI RGATCY 2 cut(s) 92, 167
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 2 cut(s) 77, 100
Sau3AI GATC 4 cut(s) 84, 92, 167, 175
Sau96I GGNCC 1 cut(s) 110
SetI ASST 6 cut(s) 35, 44, 58, 198, 309, 328
SfaNI GCATC 3 cut(s) 147, 307, 373
SgeI CNNG 9 cut(s) 46, 92, 108, 177, 239, 286, 288, 304, 320
SgrAI CRCCGGYG 1 cut(s) 79
SinI GGWCC 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 3 cut(s) 7, 27, 125
SsiI CCGC 3 cut(s) 77, 99, 102
SspMI CTAG 2 cut(s) 96, 308
TaaI ACNGT 3 cut(s) 71, 132, 153
TaiI ACGT 1 cut(s) 328
TaqII GACCGA 2 cut(s) 127, 209
TasI AATT 3 cut(s) 7, 27, 125
TauI GCSGC 2 cut(s) 79, 102
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TseFI GTSAC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 2 cut(s) 200, 326
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 1 cut(s) 7
XspI CTAG 2 cut(s) 96, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.