Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Forward (+)

39925217 .. 39927227

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG221500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCTGCTCTCAAAGCCCGAAGCTCCCTCGTCGCCACCCAAGCCTCCTCCGTCTCCCAGGAACATAAATTTTTACTCGATTTGGCCAAGTACGTCTTCCCCAAGCAGTTCGAGGCTCGGACTCTCGAGGAAGCTCTCATGTCAGTTGATGGGGGAAACTTCCTGAGGAGCTTCACCATTTCAGCTTCTGCTTCATCTAATGGGTCTCCTCCTTTGAGTTCTAGTGGTAGTAGTGGTGGGGGTGGCGGTCCTGTGATATTGGAGCTTCCTGTTGATAAGATAAGGAGGCCTTTGATGAGAACCAGAACTAATGATCCGGTCAAGGTTCAAGAACTGATGGATAGCATAAGTGAAATTGGCCTCCAAGTACCTGTTTCTTTGGATGTCATCGCTATGAAGCTCACCAGAGTCTTGGGCTCCCAACAATACATTGCAAAATTCGACGTGGGACAAAAGAAACTCTCCGGTACTTTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

159

Amino Acids

16.98

Weight (kDa)

9.52

Isoelectric Point (pI)

57.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	246
AclWI	GGATC	1 cut(s)	308
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	68, 437
AfaI	GTAC	3 cut(s)	92, 369, 469
AgsI	TTSAA	1 cut(s)	329
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	57
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AloI	GAACNNNNNNTCC	2 cut(s)	298, 330
AluBI	AGCT	6 cut(s)	24, 134, 171, 185, 265, 400
AluI	AGCT	6 cut(s)	24, 134, 171, 185, 265, 400
Alw26I	GTCTC	2 cut(s)	58, 210
AlwI	GGATC	1 cut(s)	308
AlwNI	CAGNNNCTG	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	3 cut(s)	84, 287, 358
ApoI	RAATTY	2 cut(s)	68, 437
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	166, 394
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	248
AxyI	CCTNAGG	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	88
BccI	CCATC	2 cut(s)	143, 331
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	58, 210
BfaI	CTAG	2 cut(s)	222, 478
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	2 cut(s)	316, 464
Bse21I	CCTNAGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	388
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	155
BseRI	GAGGAG	3 cut(s)	37, 181, 198
BshFI	GGCC	3 cut(s)	86, 289, 360
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	317, 465
BslFI	GGGAC	1 cut(s)	462
BsmAI	GTCTC	2 cut(s)	58, 210
BsmBI	CGTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	462
BsnI	GGCC	3 cut(s)	86, 289, 360
Bso31I	GGTCTC	1 cut(s)	210
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	3 cut(s)	86, 289, 360
BspCNI	CTCAG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	429
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	2 cut(s)	58, 210
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 41
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	412
Bsu36I	CCTNAGG	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	86, 289, 360
BtgZI	GCGATG	1 cut(s)	373
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	388
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	91, 368, 468
CviAII	CATG	1 cut(s)	139
CviQI	GTAC	3 cut(s)	91, 368, 468
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	248
Eco81I	CCTNAGG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	419
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	1 cut(s)	142
FaiI	YATR	4 cut(s)	66, 140, 347, 395
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 274, 306
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	1 cut(s)	138
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	419
FspBI	CTAG	2 cut(s)	222, 478
HaeIII	GGCC	3 cut(s)	86, 289, 360
HapII	CCGG	2 cut(s)	317, 465
Hin1II	CATG	1 cut(s)	142
HinfI	GANTC	2 cut(s)	121, 408
HpaII	CCGG	2 cut(s)	317, 465
HphI	GGTGA	2 cut(s)	166, 394
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	3 cut(s)	125, 163, 329
Hpy99I	CGWCG	2 cut(s)	35, 446
HpyCH4IV	ACGT	2 cut(s)	93, 444
HpyCH4V	TGCA	1 cut(s)	434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 41
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	2 cut(s)	93, 444
Hsp92II	CATG	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	4 cut(s)	29, 168, 262, 422
LpnPI	CCDG	9 cut(s)	44, 71, 176, 264, 282, 316, 330, 384, 418
MaeI	CTAG	2 cut(s)	222, 478
MaeII	ACGT	2 cut(s)	93, 444
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	419
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	3 cut(s)	68, 354, 437
MluNI	TGGCCA	1 cut(s)	86
MlyI	GAGTC	2 cut(s)	115, 417
MnlI	CCTC	9 cut(s)	38, 55, 58, 106, 121, 159, 219, 279, 371
Mox20I	TGGCCA	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	86
MspI	CCGG	2 cut(s)	317, 465
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	14, 41
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	418
PaeR7I	CTCGAG	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	289
PleI	GAGTC	2 cut(s)	115, 416
PpsI	GAGTC	2 cut(s)	115, 416
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	188
RsaI	GTAC	3 cut(s)	92, 369, 469
RsaNI	GTAC	3 cut(s)	91, 368, 468
RseI	CAYNNNNRTG	1 cut(s)	392
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	2 cut(s)	115, 417
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	419
Sfr274I	CTCGAG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	68, 354, 437
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	2 cut(s)	222, 478
StuI	AGGCCT	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	57
TaiI	ACGT	2 cut(s)	96, 447
TaqI	TCGA	4 cut(s)	78, 111, 126, 441
TasI	AATT	3 cut(s)	68, 354, 437
TspDTI	ATGAA	2 cut(s)	183, 410
TspGWI	ACGGA	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	2 cut(s)	68, 437
XhoI	CTCGAG	1 cut(s)	125
XspI	CTAG	2 cut(s)	222, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.