Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Forward (+)

19801016 .. 19803024

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG115400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAGGATACGACCGCCAACCGCGCTGCCGTATCTTCTCCACTACAACGAAGGAGGACCATGTCTTCTCTCAAAGCCCGAAGCTCCCTCGTCGCCGCTCTCGCCGCTCTCGCCACCCAAGCCTCCTCCATCTCCCAGGAACATAAATGGTCTCCTCCTTTGAGTTCTAGTGGTAGTAGTGGTGGGGGTGGCGGTCCTGTGATATTGGAGCTTCCTGTTGATAAGATAAGGAGGCCTTTGATGAGAACTAGAACTAATGATCCGGTCAAGGTTCAAGAACTGATGGATAGCATAAGTGAAATTGGCCTCCAAGTTTCTCTGGATGTCATCGCTATGAAGCTCACCAGAGTCTTGGGCTCCCAACAATACGTTGCAAAATTCGACGTGGGACAAAAGAAACTCTCCGGTACTTTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

139

Amino Acids

14.82

Weight (kDa)

10.52

Isoelectric Point (pI)

66.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	98, 107
AccII	CGCG	1 cut(s)	24
AciI	CCGC	5 cut(s)	15, 22, 96, 105, 192
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	377
AfaI	GTAC	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	275
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	135
AloI	GAACNNNNNNTCC	2 cut(s)	244, 276
AluBI	AGCT	3 cut(s)	84, 211, 340
AluI	AGCT	3 cut(s)	84, 211, 340
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	2 cut(s)	233, 304
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	57, 194
AsuHPI	GGTGA	1 cut(s)	334
AvaII	GGWCC	2 cut(s)	57, 194
BanII	GRGCYC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	2 cut(s)	137, 277
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	3 cut(s)	168, 249, 418
BisI	GCNGC	3 cut(s)	27, 96, 105
BlsI	GCNGC	3 cut(s)	28, 97, 106
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	2 cut(s)	57, 194
BmgBI	CACGTC	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	57, 194
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	2 cut(s)	262, 404
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	328
BseRI	GAGGAG	2 cut(s)	115, 144
BseXI	GCAGC	1 cut(s)	13
Bsh1236I	CGCG	1 cut(s)	24
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	235, 306
BsiEI	CGRYCG	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	263, 405
BslFI	GGGAC	1 cut(s)	402
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	235, 306
Bso31I	GGTCTC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	5 cut(s)	15, 22, 96, 105, 192
BspANI	GGCC	2 cut(s)	235, 306
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	358
BspPI	GGATC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	156
BsrBI	CCGCTC	2 cut(s)	98, 107
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	259
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 101, 104, 110, 119
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	235, 306
BtgZI	GCGATG	1 cut(s)	313
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	328
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	57, 194
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	8 cut(s)	77, 84, 122, 211, 235, 306, 340, 357
CviKI_1	RGCY	8 cut(s)	77, 84, 122, 211, 235, 306, 340, 357
CviQI	GTAC	1 cut(s)	408
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eco147I	AGGCCT	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	359
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	57, 194
EcoRII	CCWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	359
FaeI	CATG	1 cut(s)	64
FaiI	YATR	4 cut(s)	62, 144, 293, 335
FalI	AAGNNNNNCTT	2 cut(s)	220, 252
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	27, 96, 105
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	3 cut(s)	27, 96, 105
FspBI	CTAG	3 cut(s)	168, 249, 418
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	3 cut(s)	27, 96, 105
HaeIII	GGCC	2 cut(s)	235, 306
HapII	CCGG	2 cut(s)	263, 405
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	348
HpaII	CCGG	2 cut(s)	263, 405
HphI	GGTGA	1 cut(s)	334
Hpy188III	TCNNGA	2 cut(s)	275, 320
Hpy99I	CGWCG	2 cut(s)	95, 386
HpyAV	CCTTC	1 cut(s)	45
HpyCH4IV	ACGT	2 cut(s)	369, 384
HpyCH4V	TGCA	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 101, 104, 110, 119
HpySE526I	ACGT	2 cut(s)	369, 384
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	3 cut(s)	89, 208, 362
LpnPI	CCDG	7 cut(s)	122, 149, 210, 228, 276, 305, 358
Lsp1109I	GCAGC	1 cut(s)	13
MaeI	CTAG	3 cut(s)	168, 249, 418
MaeII	ACGT	2 cut(s)	369, 384
MalI	GATC	1 cut(s)	261
MbiI	CCGCTC	2 cut(s)	98, 107
MboI	GATC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	27, 57
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	2 cut(s)	300, 377
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	7 cut(s)	48, 98, 133, 136, 165, 225, 317
MslI	CAYNNNNRTG	1 cut(s)	332
MspI	CCGG	2 cut(s)	263, 405
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	5 cut(s)	23, 101, 104, 110, 119
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	235
PflFI	GACNNNGTC	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	28, 97, 106
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	57, 194
PsyI	GACNNNGTC	1 cut(s)	61
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	332
SatI	GCNGC	3 cut(s)	27, 96, 105
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	2 cut(s)	57, 194
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	6 cut(s)	86, 213, 273, 342, 372, 387
SinI	GGWCC	2 cut(s)	57, 194
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	2 cut(s)	300, 377
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	5 cut(s)	15, 22, 96, 105, 192
SspMI	CTAG	3 cut(s)	168, 249, 418
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	135
TaiI	ACGT	2 cut(s)	372, 387
TaqI	TCGA	1 cut(s)	381
TasI	AATT	2 cut(s)	300, 377
TauI	GCSGC	2 cut(s)	98, 107
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	17, 350
Tth111I	GACNNNGTC	1 cut(s)	61
VpaK11BI	GGWCC	2 cut(s)	57, 194
XapI	RAATTY	1 cut(s)	377
XspI	CTAG	3 cut(s)	168, 249, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.