Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Forward (+)

15356092 .. 15357655

Gene Structure 1564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTTAGATCGATTATTTCCCAAGCTAAAAGCAACAAACATACGGCTACTTGATGTCATGGAGGAATATCTCAGCTTTAAGCAGTATCGGTACCTTAGGTTGGATGGACATACATCTGGTGGTGATCATGGTTCCCTTATTGATATATTCAATAAACCAGATTCAGTGACTTATACTATTGGTGTTTATTGTTGTGGGTCTCCTCCTTTGAGTTCTAGTGGTAGTAGTGGTGGGGGTGGCGGTCCTGTGATATTGGAGCTTCCTGTTGATAAGATAAGGAGGCCTTTGATGAGAACCAGAACTAATGATCCGGTCAAGGTTCAAGAACTGATGGATAGCATAAGTGAAATTGGCCTCCAAGTACCTATTGATGTGCTTGAGGTCGATGGAGTTTATTATGGTTTCTCTGGATGTCATCGCTATGAAGCTCACCAGCGTCTTGGGTTCCCAACAATACGTTGCAAAATTCGACGTGGGACAAAAGAAACTCTCCGGCATCACCTCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

169

Amino Acids

19.01

Weight (kDa)

8.91

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParB_N	PF02195	85 - 167	1.6e-15	ParB N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	90
AciI	CCGC	2 cut(s)	240, 505
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	465
AfaI	GTAC	2 cut(s)	92, 363
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	151, 323
AjiI	CACGTC	1 cut(s)	473
AloI	GAACNNNNNNTCC	2 cut(s)	292, 324
AluBI	AGCT	4 cut(s)	25, 75, 259, 428
AluI	AGCT	4 cut(s)	25, 75, 259, 428
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	2 cut(s)	281, 352
ApoI	RAATTY	1 cut(s)	465
Asp718I	GGTACC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	134, 422, 491
AvaII	GGWCC	1 cut(s)	242
AxyI	CCTNAGG	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	90
BccI	CCATC	3 cut(s)	98, 325, 380
BceAI	ACGGC	1 cut(s)	59
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	242
BmgBI	CACGTC	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	3 cut(s)	92, 133, 446
BmsI	GCATC	1 cut(s)	505
BpuEI	CTTGAG	1 cut(s)	398
Bsa29I	ATCGAT	1 cut(s)	10
BsaI	GGTCTC	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse21I	CCTNAGG	1 cut(s)	95
BseCI	ATCGAT	1 cut(s)	10
BseGI	GGATG	2 cut(s)	109, 416
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	283, 354
BshNI	GGYRCC	1 cut(s)	90
BshVI	ATCGAT	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	311, 493
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	2 cut(s)	283, 354
Bso31I	GGTCTC	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	7, 124, 307
BspACI	CCGC	2 cut(s)	240, 505
BspANI	GGCC	2 cut(s)	283, 354
BspCNI	CTCAG	1 cut(s)	84
BspDI	ATCGAT	1 cut(s)	10
BspLI	GGNNCC	3 cut(s)	92, 133, 446
BspPI	GGATC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	204
BssMI	GATC	3 cut(s)	7, 124, 307
BstDEI	CTNAG	2 cut(s)	71, 95
BstF5I	GGATG	2 cut(s)	109, 416
BstKTI	GATC	3 cut(s)	10, 127, 310
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	3 cut(s)	7, 124, 307
BstXI	CCANNNNNNTGG	1 cut(s)	440
Bsu15I	ATCGAT	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	283, 354
BsuTUI	ATCGAT	1 cut(s)	10
BtgZI	GCGATG	1 cut(s)	401
BtrI	CACGTC	1 cut(s)	473
BtsCI	GGATG	2 cut(s)	109, 416
BtsIMutI	CAGTG	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	242
ClaI	ATCGAT	1 cut(s)	10
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	91, 362
CviAII	CATG	2 cut(s)	58, 128
CviJI	RGCY	7 cut(s)	25, 46, 75, 259, 283, 354, 428
CviKI_1	RGCY	7 cut(s)	25, 46, 75, 259, 283, 354, 428
CviQI	GTAC	2 cut(s)	91, 362
DdeI	CTNAG	2 cut(s)	71, 95
DpnI	GATC	3 cut(s)	9, 126, 309
DpnII	GATC	3 cut(s)	7, 124, 307
Eco147I	AGGCCT	1 cut(s)	283
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	242
Eco81I	CCTNAGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	61, 131
FaiI	YATR	9 cut(s)	41, 59, 111, 129, 146, 174, 341, 399, 423
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	2 cut(s)	57, 127
FbaI	TGATCA	1 cut(s)	124
FokI	GGATG	2 cut(s)	116, 423
FspBI	CTAG	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	283, 354
HapII	CCGG	2 cut(s)	311, 493
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	61, 131
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	2 cut(s)	311, 493
HphI	GGTGA	3 cut(s)	134, 422, 491
Hpy188III	TCNNGA	2 cut(s)	323, 408
Hpy99I	CGWCG	1 cut(s)	474
HpyCH4IV	ACGT	2 cut(s)	457, 472
HpyCH4V	TGCA	1 cut(s)	462
HpyF3I	CTNAG	2 cut(s)	71, 95
HpySE526I	ACGT	2 cut(s)	457, 472
Hsp92II	CATG	2 cut(s)	61, 131
KpnI	GGTACC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	7, 124, 307
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	9 cut(s)	102, 171, 258, 276, 310, 324, 393, 446, 506
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	2 cut(s)	457, 472
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	3 cut(s)	9, 126, 309
MboI	GATC	3 cut(s)	7, 124, 307
MluCI	AATT	2 cut(s)	348, 465
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	5 cut(s)	55, 213, 273, 365, 373
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	507
MspI	CCGG	2 cut(s)	311, 493
NdeII	GATC	3 cut(s)	7, 124, 307
NlaIII	CATG	2 cut(s)	61, 131
NlaIV	GGNNCC	3 cut(s)	92, 133, 446
NmuCI	GTSAC	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	161
PspN4I	GGNNCC	3 cut(s)	92, 133, 446
PspPI	GGNCC	1 cut(s)	242
RsaI	GTAC	2 cut(s)	92, 363
RsaNI	GTAC	2 cut(s)	91, 362
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	78
Sau3AI	GATC	3 cut(s)	7, 124, 307
Sau96I	GGNCC	1 cut(s)	242
SfaNI	GCATC	1 cut(s)	505
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	2 cut(s)	348, 465
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	2 cut(s)	240, 505
SspMI	CTAG	1 cut(s)	216
StuI	AGGCCT	1 cut(s)	283
TaiI	ACGT	2 cut(s)	460, 475
TaqI	TCGA	3 cut(s)	10, 384, 469
TasI	AATT	2 cut(s)	348, 465
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	465
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.