Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Reverse (-)

14702804 .. 14704038

Gene Structure 1235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG160000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCCAATTTTGTTCTGCAAGTTCCAAATAGCCTGAGGAGCTTCACCATTTCAGCTTCTGCTTCATCTAATGGGTCTCCTCCCTTGAGTTCTAGTGGTAGTAGTGGTGGGGGTGGTGGTCCTGTGATATTGGAGCTTCCTGTTGATAAGATAAGGAGGCCTTTGATGAGAACCAGAGCTAATGATCCGGTCAAGGTTCAAGAACTTATGGATAGCATAAGTGAAATTGGCCTCCAAGTACCTATTGATGTGCTTGAGGTCGATGGAGTTTATTATGGTTTCTCTGGATGTCATCGCTATGAAGCTCACCAGCGTCTTGGGCTCCCAACAATACGTTGCAAAATTCGACGGGGGACAAAAGAAACTCTCCGGCATCACCTCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

128

Amino Acids

13.95

Weight (kDa)

9.69

Isoelectric Point (pI)

58.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParB_N	PF02195	44 - 126	4.7e-16	ParB N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	382
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	342
AfaI	GTAC	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	5 cut(s)	42, 56, 136, 179, 305
AluI	AGCT	5 cut(s)	42, 56, 136, 179, 305
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	59
AoxI	GGCC	3 cut(s)	3, 158, 229
ApoI	RAATTY	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	3 cut(s)	37, 299, 368
AvaII	GGWCC	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	324
BccI	CCATC	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	323
BmsI	GCATC	1 cut(s)	382
BpuEI	CTTGAG	2 cut(s)	106, 275
BsaI	GGTCTC	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	187
Bse21I	CCTNAGG	1 cut(s)	35
BseGI	GGATG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	2 cut(s)	52, 69
BshFI	GGCC	3 cut(s)	5, 160, 231
BsiSI	CCGG	2 cut(s)	188, 370
BslFI	GGGAC	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	3 cut(s)	5, 160, 231
Bso31I	GGTCTC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	382
BspANI	GGCC	3 cut(s)	5, 160, 231
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	81
BssMI	GATC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	293
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 319
BstXI	CCANNNNNNTGG	1 cut(s)	317
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	5, 160, 231
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	293
CaiI	CAGNNNCTG	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	239
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	3
Eco147I	AGGCCT	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	119
Eco81I	CCTNAGG	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	324
FaiI	YATR	4 cut(s)	209, 218, 276, 300
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FaqI	GGGAC	1 cut(s)	367
FokI	GGATG	1 cut(s)	300
FriOI	GRGCYC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	5, 160, 231
HapII	CCGG	2 cut(s)	188, 370
HgaI	GACGC	1 cut(s)	302
HpaII	CCGG	2 cut(s)	188, 370
HphI	GGTGA	3 cut(s)	37, 299, 368
Hpy188III	TCNNGA	2 cut(s)	200, 285
Hpy99I	CGWCG	1 cut(s)	351
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	2 cut(s)	19, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 319
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	3 cut(s)	39, 133, 327
LpnPI	CCDG	8 cut(s)	47, 135, 153, 187, 201, 270, 323, 383
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	334
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	324
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	7, 225, 342
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	5 cut(s)	30, 90, 150, 242, 250
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	297
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	384
MspI	CCGG	2 cut(s)	188, 370
MwoI	GCNNNNNNNGC	2 cut(s)	39, 319
NdeII	GATC	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	297
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	324
SfaNI	GCATC	1 cut(s)	382
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	85, 254
SmoI	CTYRAG	2 cut(s)	85, 254
Sse9I	AATT	3 cut(s)	7, 225, 342
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	382
SspMI	CTAG	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	261, 346
TasI	AATT	3 cut(s)	7, 225, 342
TspDTI	ATGAA	2 cut(s)	54, 315
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	342
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.