Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Reverse (-)

42456366 .. 42458568

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG327600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAAGGATACGGCCGCCAATCGCGCTGCCGTATCTTCTCCACTGCAGCGAAGGAGGACCATGTTTGCTCTCAAATCCCGAAGCCCCCTCGTCGCCGCTCTTGCCACCCAAGCCTCCTTCGTCTCCCAGGAACATAAATTTTTACTCGATTTGGCCAAGTACGTCTTCCCCAAGCAGTTCGAGGCTCGGACTCTCGAGGAAGCTCTCATGTCAGTTGATGGGGGAAACTTCCTGAGGAGCTTCACCATTTCAGCTTCTGCTTCATCTAATGGGTCTCCTCCTTTGAGTTCTAGTGGTAGTAGTGGTGGGGGTGGCGGTCCTGTGATATTGGAGCTTCCTGTTGATAAGATAAGGAGGCCTTTGATGAGAACCAGAACTAATGATCCAGTCAAGGTTCAAGAACTGATGGATAGCATAAGTGAAATTGGCCTCCAAGTACCTGTTTCTCTGGATGTCATCGCTATGAAGCTCACCAGTGTCTTGGGCTCCCAACAATACGTTGCAAAATTCGACATGGGACAAAAGAAACTCTCCGGCATCACCTCCACTGAGTATGAGTTAATTTGCAGCTTGAACAAGTTAATCAGCTACTTACCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

200

Amino Acids

21.61

Weight (kDa)

9.55

Isoelectric Point (pI)

58.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	98
AccII	CGCG	1 cut(s)	24
AciI	CCGC	3 cut(s)	15, 96, 315
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	2 cut(s)	12, 153
AcsI	RAATTY	2 cut(s)	137, 506
AfaI	GTAC	2 cut(s)	161, 438
AgsI	TTSAA	2 cut(s)	398, 574
AjnI	CCWGG	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AloI	GAACNNNNNNTCC	2 cut(s)	367, 399
AluBI	AGCT	7 cut(s)	203, 240, 254, 334, 469, 570, 588
AluI	AGCT	7 cut(s)	203, 240, 254, 334, 469, 570, 588
Alw26I	GTCTC	2 cut(s)	127, 279
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	4 cut(s)	12, 153, 356, 427
ApeKI	GCWGC	3 cut(s)	26, 46, 567
ApoI	RAATTY	2 cut(s)	137, 506
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	57, 317
AsuHPI	GGTGA	3 cut(s)	235, 463, 532
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	2 cut(s)	57, 317
AxyI	CCTNAGG	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	157
BbvI	GCAGC	3 cut(s)	13, 58, 579
BccI	CCATC	2 cut(s)	212, 400
BceAI	ACGGC	2 cut(s)	14, 27
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	127, 279
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	44
BisI	GCNGC	5 cut(s)	15, 27, 47, 96, 568
BlsI	GCNGC	5 cut(s)	16, 28, 48, 97, 569
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	2 cut(s)	57, 317
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	2 cut(s)	57, 317
BmiI	GGNNCC	1 cut(s)	487
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	546
BpiI	GAAGAC	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	126
Bse1I	ACTGG	2 cut(s)	386, 474
Bse21I	CCTNAGG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	457
BseMII	CTCAG	2 cut(s)	224, 540
BseNI	ACTGG	2 cut(s)	386, 474
BseRI	GAGGAG	2 cut(s)	250, 267
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	3 cut(s)	13, 58, 579
Bsh1236I	CGCG	1 cut(s)	24
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	4 cut(s)	14, 155, 358, 429
BsiEI	CGRYCG	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	534
BslFI	GGGAC	1 cut(s)	531
BsmAI	GTCTC	2 cut(s)	127, 279
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	4 cut(s)	14, 155, 358, 429
Bso31I	GGTCTC	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	1 cut(s)	382
BspACI	CCGC	3 cut(s)	15, 96, 315
BspANI	GGCC	4 cut(s)	14, 155, 358, 429
BspCNI	CTCAG	2 cut(s)	225, 541
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	487
BspMAI	CTGCAG	1 cut(s)	48
BspPI	GGATC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	279
BsrBI	CCGCTC	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	386, 474
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	233, 549
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	2 cut(s)	127, 279
BstMBI	GATC	1 cut(s)	382
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 101, 110
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	44
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	13, 58, 579
BstV2I	GAAGAC	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstZI	CGGCCG	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	233
BsuRI	GGCC	4 cut(s)	14, 155, 358, 429
BtgZI	GCGATG	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	3 cut(s)	41, 481, 546
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	57, 317
Csp6I	GTAC	2 cut(s)	160, 437
CviAII	CATG	3 cut(s)	61, 208, 514
CviQI	GTAC	2 cut(s)	160, 437
DdeI	CTNAG	2 cut(s)	233, 549
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
EaeI	YGGCCR	2 cut(s)	12, 153
EagI	CGGCCG	1 cut(s)	12
EclXI	CGGCCG	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	488
Eco31I	GGTCTC	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	57, 317
Eco52I	CGGCCG	1 cut(s)	12
Eco81I	CCTNAGG	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	488
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	3 cut(s)	64, 211, 517
FaiI	YATR	7 cut(s)	62, 135, 209, 416, 464, 515, 555
FalI	AAGNNNNNCTT	4 cut(s)	149, 181, 343, 375
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	3 cut(s)	60, 207, 513
Fnu4HI	GCNGC	5 cut(s)	15, 27, 47, 96, 568
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	5 cut(s)	15, 27, 47, 96, 568
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	5 cut(s)	15, 27, 47, 96, 568
HaeIII	GGCC	4 cut(s)	14, 155, 358, 429
HapII	CCGG	1 cut(s)	534
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	64, 211, 517
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	3 cut(s)	235, 463, 532
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	5 cut(s)	78, 194, 232, 398, 449
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	45, 127
HpyCH4IV	ACGT	2 cut(s)	162, 498
HpyCH4V	TGCA	3 cut(s)	46, 503, 567
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 101, 110
HpyF3I	CTNAG	2 cut(s)	233, 549
HpySE526I	ACGT	2 cut(s)	162, 498
Hsp92II	CATG	3 cut(s)	64, 211, 517
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	3 cut(s)	237, 331, 491
Lsp1109I	GCAGC	3 cut(s)	13, 58, 579
LweI	GCATC	1 cut(s)	546
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	2 cut(s)	162, 498
MalI	GATC	1 cut(s)	384
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	1 cut(s)	382
MboII	GAAGA	2 cut(s)	27, 157
MhlI	GDGCHC	1 cut(s)	488
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	4 cut(s)	137, 423, 506, 561
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	184
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	3 cut(s)	560, 581, 601
MslI	CAYNNNNRTG	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	155
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	23, 101, 110
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	3 cut(s)	64, 211, 517
NlaIV	GGNNCC	1 cut(s)	487
PaeR7I	CTCGAG	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	358
PkrI	GCNGC	5 cut(s)	16, 28, 48, 97, 569
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	487
PspPI	GGNCC	2 cut(s)	57, 317
PstI	CTGCAG	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	161, 438
RsaNI	GTAC	2 cut(s)	160, 437
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	3 cut(s)	560, 581, 601
SatI	GCNGC	5 cut(s)	15, 27, 47, 96, 568
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	2 cut(s)	57, 317
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	488
SfaNI	GCATC	1 cut(s)	546
SfcI	CTRYAG	1 cut(s)	44
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	57, 317
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	4 cut(s)	137, 423, 506, 561
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	3 cut(s)	15, 96, 315
SspMI	CTAG	1 cut(s)	291
StuI	AGGCCT	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	126
TaiI	ACGT	2 cut(s)	165, 501
TaqI	TCGA	4 cut(s)	147, 180, 195, 510
TasI	AATT	4 cut(s)	137, 423, 506, 561
TauI	GCSGC	2 cut(s)	17, 98
Tru1I	TTAA	3 cut(s)	560, 581, 601
Tru9I	TTAA	3 cut(s)	560, 581, 601
TscAI	CASTG	3 cut(s)	48, 481, 553
TseI	GCWGC	3 cut(s)	26, 46, 567
TspDTI	ATGAA	3 cut(s)	17, 252, 479
TspRI	CASTG	3 cut(s)	48, 481, 553
VpaK11BI	GGWCC	2 cut(s)	57, 317
XapI	RAATTY	2 cut(s)	137, 506
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.