Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Reverse (-)

40556633 .. 40557677

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49826

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGGTCTCCTCCTTTGAGTTCTAGTGGTAGTAGTGGTGGGGGTGGCGGTCCTGTGATATTGGAGCTTCCTGTTGATAAGATAAGGAGGCCTTTGATGAGAACCAGAACTAATGATCCAGTCAAGGTTCAAGAACTGATGGATAGCATAAGTGAAATTGGCCTCCAAGTACCTGTAAGTATTGGTTTCTCTGGATGTCATCGCTATGAAGCTCACCAGTGTCTTGGGCTCCCAACAATACGTTGCAAAATTCGACATGGGACAAAAGAAACTCTCCGGTACTTTTGCCTAGTCTTAATGATTCTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

103

Amino Acids

11.2

Weight (kDa)

9.13

Isoelectric Point (pI)

58.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParB_N	PF02195	21 - 92	1e-08	ParB N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	249
AfaI	GTAC	2 cut(s)	171, 281
AgsI	TTSAA	1 cut(s)	131
AloI	GAACNNNNNNTCC	2 cut(s)	100, 132
AluBI	AGCT	2 cut(s)	67, 212
AluI	AGCT	2 cut(s)	67, 212
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	2 cut(s)	89, 160
ApoI	RAATTY	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	231
BccI	CCATC	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	24, 290
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	119, 217
BseGI	GGATG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	119, 217
BshFI	GGCC	2 cut(s)	91, 162
BsiSI	CCGG	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	91, 162
Bso31I	GGTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	91, 162
BspLI	GGNNCC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	119, 217
BssMI	GATC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	200
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	91, 162
BtgZI	GCGATG	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	170, 280
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	5 cut(s)	67, 91, 162, 212, 229
CviKI_1	RGCY	5 cut(s)	67, 91, 162, 212, 229
CviQI	GTAC	2 cut(s)	170, 280
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	1 cut(s)	260
FaiI	YATR	3 cut(s)	149, 207, 258
FalI	AAGNNNNNCTT	2 cut(s)	76, 108
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	1 cut(s)	256
FokI	GGATG	1 cut(s)	207
FriOI	GRGCYC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	24, 290
HaeIII	GGCC	2 cut(s)	91, 162
HapII	CCGG	1 cut(s)	277
Hin1II	CATG	1 cut(s)	260
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	1 cut(s)	206
Hpy188III	TCNNGA	2 cut(s)	131, 192
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	260
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	2 cut(s)	64, 234
LpnPI	CCDG	8 cut(s)	66, 84, 118, 132, 177, 186, 230, 290
MaeI	CTAG	2 cut(s)	24, 290
MaeII	ACGT	1 cut(s)	241
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	156, 249
MnlI	CCTC	3 cut(s)	21, 81, 173
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	50
RsaI	GTAC	2 cut(s)	171, 281
RsaNI	GTAC	2 cut(s)	170, 280
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	296
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	5 cut(s)	69, 129, 175, 214, 244
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	2 cut(s)	156, 249
SseBI	AGGCCT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	2 cut(s)	24, 290
StuI	AGGCCT	1 cut(s)	91
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	253
TasI	AATT	2 cut(s)	156, 249
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	249
XspI	CTAG	2 cut(s)	24, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.