Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Reverse (-)

16627069 .. 16629233

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG095300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTTCTTCTCCGACGATTCGTCGAATCAAAAGCACGTGGATTTGGGGGGACGGAGTATGAAGGAGAGGGATGAAGGATACGGCCGCCAACCGCGCTGCCTTTTACTCGATTTGGCCAAGTACGTATTCCCCAAGCAGTTCGAGGCTTGGACTCTCGAGGAAGCTCTCATGTCAGGGTCTCCTCCTTTGAGTTCTAGTGGTAGTAGTGGTGGGGGTGGCGGTCCTGTGATATTGGAGCTTCCTGTTGATAAGATAAGGAGGCCTTTGATGAGAACCAGAACTAATGATTCGGTCAAGGTTCAAGAACTGATGGATAGGATAAGTGAAATTGGCCTCCAAGTTTCTCTGGATGTCATCGCTATGAAGCTCACCAGCGTCTTGGGCTCCCAACAATACGTTGCAAAATTCGACGTGGGACAAAAGAAACTCTCCGGTACTTTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

148

Amino Acids

16.26

Weight (kDa)

7.82

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	94
AciI	CCGC	3 cut(s)	85, 92, 219
AcoI	YGGCCR	2 cut(s)	82, 114
AcsI	RAATTY	1 cut(s)	404
AcvI	CACGTG	1 cut(s)	37
AfaI	GTAC	2 cut(s)	122, 436
AgsI	TTSAA	1 cut(s)	302
AhdI	GACNNNNNGTC	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	3 cut(s)	164, 238, 367
AluI	AGCT	3 cut(s)	164, 238, 367
Alw26I	GTCTC	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	4 cut(s)	82, 114, 260, 331
ApeKI	GCWGC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	361
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	221
BalI	TGGCCA	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	386
BbrPI	CACGTG	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	195, 445
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	2 cut(s)	85, 97
BlsI	GCNGC	2 cut(s)	86, 98
Bme18I	GGWCC	1 cut(s)	221
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	385
BsaAI	YACGTR	2 cut(s)	37, 124
BsaI	GGTCTC	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	431
BseGI	GGATG	2 cut(s)	76, 355
BseRI	GAGGAG	1 cut(s)	171
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	4 cut(s)	84, 116, 262, 333
BsiEI	CGRYCG	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	2 cut(s)	63, 429
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	2 cut(s)	63, 429
BsnI	GGCC	4 cut(s)	84, 116, 262, 333
Bso31I	GGTCTC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	386
BspACI	CCGC	3 cut(s)	85, 92, 219
BspANI	GGCC	4 cut(s)	84, 116, 262, 333
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	385
BspTNI	GGTCTC	1 cut(s)	183
BstBAI	YACGTR	2 cut(s)	37, 124
BstF5I	GGATG	2 cut(s)	76, 355
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	183
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 381
BstSNI	TACGTA	1 cut(s)	124
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	83
BstXI	CCANNNNNNTGG	1 cut(s)	379
BstZI	CGGCCG	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	4 cut(s)	84, 116, 262, 333
BtgZI	GCGATG	1 cut(s)	340
BtrI	CACGTC	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	76, 355
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	121, 435
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	9 cut(s)	84, 116, 146, 164, 238, 262, 333, 367, 384
CviKI_1	RGCY	9 cut(s)	84, 116, 146, 164, 238, 262, 333, 367, 384
CviQI	GTAC	2 cut(s)	121, 435
DriI	GACNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	2 cut(s)	82, 114
EagI	CGGCCG	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EclXI	CGGCCG	1 cut(s)	82
Eco105I	TACGTA	1 cut(s)	124
Eco147I	AGGCCT	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	386
Eco31I	GGTCTC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	221
Eco52I	CGGCCG	1 cut(s)	82
Eco72I	CACGTG	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	386
FaeI	CATG	1 cut(s)	172
FaiI	YATR	3 cut(s)	59, 170, 362
FalI	AAGNNNNNCTT	2 cut(s)	247, 279
FaqI	GGGAC	2 cut(s)	63, 429
FatI	CATG	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	85, 97
FokI	GGATG	2 cut(s)	83, 362
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	2 cut(s)	85, 97
FspBI	CTAG	2 cut(s)	195, 445
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	2 cut(s)	85, 97
HaeIII	GGCC	4 cut(s)	84, 116, 262, 333
HapII	CCGG	1 cut(s)	432
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	4 cut(s)	17, 25, 151, 287
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	3 cut(s)	155, 302, 347
Hpy99I	CGWCG	3 cut(s)	17, 25, 413
HpyAV	CCTTC	2 cut(s)	55, 68
HpyCH4IV	ACGT	4 cut(s)	36, 123, 396, 411
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 381
HpySE526I	ACGT	4 cut(s)	36, 123, 396, 411
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	94
LmnI	GCTCC	2 cut(s)	235, 389
LpnPI	CCDG	6 cut(s)	159, 237, 255, 289, 332, 385
Lsp1109I	GCAGC	1 cut(s)	83
MaeI	CTAG	2 cut(s)	195, 445
MaeII	ACGT	4 cut(s)	36, 123, 396, 411
MhlI	GDGCHC	1 cut(s)	386
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	2 cut(s)	327, 404
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	6 cut(s)	60, 136, 151, 192, 252, 344
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	116
MspI	CCGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	93, 381
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	385
PaeR7I	CTCGAG	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	262
PfeI	GAWTC	3 cut(s)	17, 25, 287
PkrI	GCNGC	2 cut(s)	86, 98
PleI	GAGTC	1 cut(s)	145
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	145
Ppu21I	YACGTR	2 cut(s)	37, 124
PspCI	CACGTG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	221
RsaI	GTAC	2 cut(s)	122, 436
RsaNI	GTAC	2 cut(s)	121, 435
RseI	CAYNNNNRTG	1 cut(s)	359
SatI	GCNGC	2 cut(s)	85, 97
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	8 cut(s)	39, 126, 166, 240, 300, 369, 399, 414
Sfr274I	CTCGAG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	221
SlaI	CTCGAG	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SnaBI	TACGTA	1 cut(s)	124
Sse9I	AATT	2 cut(s)	327, 404
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	3 cut(s)	85, 92, 219
SspMI	CTAG	2 cut(s)	195, 445
StuI	AGGCCT	1 cut(s)	262
TaiI	ACGT	4 cut(s)	39, 126, 399, 414
TaqI	TCGA	5 cut(s)	23, 108, 141, 156, 408
TaqII	GACCGA	1 cut(s)	280
TasI	AATT	2 cut(s)	327, 404
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	3 cut(s)	17, 25, 287
TseI	GCWGC	1 cut(s)	96
TspDTI	ATGAA	3 cut(s)	74, 87, 377
TspGWI	ACGGA	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	404
XhoI	CTCGAG	1 cut(s)	155
XspI	CTAG	2 cut(s)	195, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.