Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Reverse (-)

5103329 .. 5110375

Gene Structure 7047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0058600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3576 bp

ATGGAAGAAGAGCCGGAGTACGAAGAGCAGTACAACGAGGAGGACGACGAAGATGAGATAACGCAGGAAGACGCGTGGGCTGTGATTTCAGCCTATTTCGAAGAGAAGGGTTTAGTGAGGCAGCAGCTGGACTCGTTCGATGAGTTCATTCAGAACACAATGCAGGAGATTGTCGACGAGGCCGCCGATATCGAAATCCGACCCGAATCGCAGCATAACCCGGGTCACCAGCCCGATTTCGCTGAGACTATATACAAAATCAGCTTCGGTCAGATTTATCTGAGTAAGCCTATGATGACTGAGTCGGATGGTGAGACTGCAACGCTGTTTCCGAAAGCTGCGAGGTTGCGAAACTTGACGTACTCGGCGCCTTTGTATGTGGATGTGACGAAGAGGGTTATAAAGAAAGGACATGATGGTGAAGAAGTGACTGAGACTCAGGATTTCACCAAAGTGTTCATTGGAAAGGTCCCAATTATGCTCCGTTCGAGTTATTGTACATTGTATCAGAATTCGGAGAAAGACTTGACGGAGCTGGGGGAGTGTCCTTATGACCAAGGCGGGTATTTCATTATCAATGGGAGTGAGAAGGTGTTGATTGCTCAGGAGAAGATGAGCACGAACCACGTCTATGTCTTCAAGAAGAGGCAGCCTAATAAGTATGCTTATGTTGGGGAGGTACGGTCTATGGCGGAGTCCCAAAACCGACCCCCCAGCACCATGTTCGTTCGTATGCTTTCCCGGACGAGCTCCAAAGGGGGTTCTTCAGGACAATACATTCGTGCTACTCTTCCGTATATTCGATCTGAGATTCCCATTATTATTGTCTTCCGGGCTCTTGGATTTGTGGCAGACAAAGACATTTTGGAGCATATATGCTATGATTTTTCAGATACGCAAATGATGGAGTTGCTTCGTCCTTCCCTGGAAGAAGCATTTGTTATTCAGAATCAACAGGTGGCACTAGATTATATTGGTAAAAGAGGTGCAACAGCTGGGGTACCTAGAGACAAGAGGATAAGGTATGCGAGAGATATTCTTCAAAAGGAAATGCTTCCACATGTTGGTGTTGGGGAGTTTTGTGAGACCAAGAAAGCATATTATTTTGGATACATCATTCACAGGCTTCTACTGTGTGCACTTGGTCGGAGAGCAGAAGATGATAGGGATCACTATGGAAATAAGAGGCTAGATCTTGCTGGCCCCTTACTCGGAAGCTTGTTTAGATCGCTATTCAGGAAGCTGACCAAGGATGTTAAAGGTTATGTTCAGAAGTGCGTTGATAATGGAAAGGATGTCAACCTGCAATTTGCAATTAAAGCAAAAACCATTACCAGTGGTCTCAAATATTCACTTGCTACTGGAAACTGGGGGCAAGCAAATGCAGCTGGGACAAGGGCTGGAGTGTCGCAGGTTTTAAATCGTTTGACATATGCATCTACATTATCACACTTGCGAAGGCTAAATTCTCCCATAGGGCGTGAAGGGAAATTGGCCAAACCCCGGCAGTTGCACAATTCACAGTGGGGAATGATGTGTCCCGCTGAGACACCTGAAGGGCAGGCATGCGGACTTGTAAAGAACCTTGCATTGATGGTCTACATAACTGTGGGATCAGCTGCATATCCAATCTTAGAATTTTTAGAAGAATGGGGTACAGAAAATTTTGAGGAAATTTCCCCTGCTGTTATTCCCCAAGCCACAAAGATTTTTGTTAATGGCTGCTGGGTTGGCATACATCGTGATCCTGAAATGTTGGTGAGAACATTAAGGAAGCTAAGGCGGCGGGTGGATGTCAATACTGAAGTTGGGGTTGTAAGAGATATCCGTCTGAAAGAATTGCGGATATATACTGATTATGGTCGTTGCAGTCGTCCATTATTCATTGTGGACAAGCAAAGGCTGCTTATAAAGAAGAAAGATATTCATGCATTGCAGCAGAGGGAAAACCCTGAAGACGGTGGTTGGCATGATCTCGTGGCAAAAGGATTTATAGAATACATTGACACTGAAGAAGAGGAGACCACTATGATTTCGATGACAATTAATGATCTTGTACAAGCAAGGCTCAACCCTGAGGAGGCATATTCTGACACTTACACTCATTGTGAAATTCACCCGTCACTTATATTGGGTGTTTGTGCTTCAATTATACCATTTCCTGATCATAATCAGTCTCCACGTAATACATATCAATCTGCCATGGGAAAGCAAGCTATGGGAATTTATGTCACCAATTATCAGTTCCGAATGGATACACTGGCTTATGTTCTGTACTACCCTCAGAAGCCGCTTGTCACTACACGAGCCATGGAGCATCTTCACTTCCGGCAACTTCCAGCTGGAATTAATGCCATTGTTGCCATTTCCTGCTACTCTGGTTATAATCAGGAAGATTCTGTCATTATGAATCAATCGTCTATAGATCGTGGATTTTTCCGGTCACTGTTCTTCCGCTCCTATAGGGATGAGGAAAAAAAGATGGGGACCCTTGTCAAAGAAGATTTTGGACGTCCAGACAGAGCAAATACGATGGGTATGAGGCATGGTTCTTATGATAAATTGGATGATGATGGTCTTGCACCTCCTGGAACCAGGGTTTCAGGTGAGGATGTTATCATAGGGAAGACCACTCCCATTGCTCCAGAGGAGGCTCAGGGGCAAGCTGCTTCGCGTTACTCACGACGTGACCATAGTATAAGCTTACGGCACAGTGAAACTGGGATTGTGGACCAGGTTTTATTGACTACCAATGCTGATGGGTTGAGGTTTGTGAAAGTGAGGGTGAGGTCTGTTCGAATTCCACAGATTGGGGATAAATTTAGCAGTAGGCATGGACAGAAAGGGACGGTGGGTATGACATATACACAAGAAGACATGCCATGGACTGTAGAAGGAGTCACCCCTGATATTATTGTGAACCCTCATGCTATTCCTTCCCGAATGACCATTGGTCAGCTTATTGAGTGTATCATGGGGAAGGTTGCAGCACACATGGGAAAGGAAGGAGATGCTACTCCCTTTACGGATGTGACTGTGGACAATATTAGCAAAGCTCTTCACAAATGTGGGTATCAAATGCGGGGATTTGAGACCATGTATAATGGTCACACTGGTCGGCGACTGAGTGCAATGATATTCCTTGGCCCGACATATTACCAGAGATTGAAGCATATGGTTGATGATAAGATCCATTCTCGTGGTCGGGGTCCTGTACAGATCCTCACAAGGCAGCCTGCTGAGGGACGGTCTCGTGATGGTGGTTTACGATTTGGAGAGATGGAACGAGATTGCATGATTGCCCACGGTGCTGCTCACTTTCTTAAAGAGAGATTATTTGATCAGAGTGATGCCTATAGGGTTCATGTCTGCGAGCGTTGTGGTTTAATAGCTATTGCAAATCTCAAGAAGAATTCATTCGAGTGCAGAGGTTGTAAGAACAAAACTGATATTGTTCAGGTTCACATTCCTTATGCCTGCAAGCTGCTATTCCAAGAGCTTATGGCCATGGCTATAGCACCAAGAATGCTCACAAAGGATGTCAAGCCTATCAAAGAAAAGAAAAAAGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

1191

Amino Acids

135.04

Weight (kDa)

7.74

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	37 - 446	1.2e-78	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	207 - 398	4.6e-55	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	471 - 535	1e-24	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4	PF04566	570 - 631	8.6e-24	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_5	PF04567	656 - 707	6.5e-18	RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6	PF00562	714 - 1085	4.9e-142	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	1087 - 1178	1.6e-35	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	401, 1910, 2385
AatII	GACGTC	1 cut(s)	2515
Acc36I	ACCTGC	2 cut(s)	1311, 1402
Acc65I	GGTACC	1 cut(s)	1000
AccB1I	GGYRCC	2 cut(s)	367, 1000
AccB7I	CCANNNNNTGG	2 cut(s)	1064, 2810
AccBSI	CCGCTC	1 cut(s)	2457
AccI	GTMKAC	2 cut(s)	174, 1599
AccII	CGCG	2 cut(s)	74, 2674
AclWI	GGATC	5 cut(s)	1176, 1621, 1739, 3184, 3214
AcoI	YGGCCR	2 cut(s)	1494, 3504
AcuI	CTGAAG	5 cut(s)	750, 1575, 1824, 1974, 2031
AcyI	GRCGYC	2 cut(s)	368, 2512
AdeI	CACNNNGTG	1 cut(s)	2687
AfiI	CCNNNNNNNGG	7 cut(s)	1064, 1211, 1503, 1958, 2080, 2810, 3242
AflIII	ACRYGT	2 cut(s)	72, 1060
AgsI	TTSAA	4 cut(s)	640, 1043, 2148, 3169
AhdI	GACNNNNNGTC	1 cut(s)	2952
AjiI	CACGTC	2 cut(s)	628, 2687
AjnI	CCWGG	4 cut(s)	924, 2587, 2594, 2733
AjuI	GAANNNNNNNTTGG	2 cut(s)	2228, 2260
AleI	CACNNNNGTG	2 cut(s)	452, 3066
Alw21I	GWGCWC	3 cut(s)	620, 752, 1141
Alw44I	GTGCAC	1 cut(s)	1137
AlwI	GGATC	5 cut(s)	1176, 1621, 1739, 3184, 3214
AlwNI	CAGNNNCTG	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	5 cut(s)	180, 1201, 1494, 3145, 3504
ApaLI	GTGCAC	1 cut(s)	1137
ArsI	GACNNNNNNTTYG	2 cut(s)	762, 794
AseI	ATTAAT	2 cut(s)	2046, 2349
Asp700I	GAANNNNTTC	2 cut(s)	1053, 3416
Asp718I	GGTACC	1 cut(s)	1000
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	6 cut(s)	469, 1202, 2487, 2731, 3146, 3209
AsuC2I	CCSGG	5 cut(s)	221, 222, 742, 833, 1504
AsuII	TTCGAA	2 cut(s)	99, 2797
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	4 cut(s)	469, 2487, 2731, 3209
AxyI	CCTNAGG	1 cut(s)	2076
BaeGI	GKGCMC	1 cut(s)	1141
BalI	TGGCCA	2 cut(s)	1496, 3506
BanI	GGYRCC	2 cut(s)	367, 1000
BanII	GRGCYC	2 cut(s)	752, 838
BauI	CACGAG	4 cut(s)	1976, 2304, 3198, 3252
BbsI	GAAGAC	6 cut(s)	75, 628, 820, 1962, 2633, 2880
Bbv12I	GWGCWC	3 cut(s)	620, 752, 1141
BbvCI	CCTCAGC	1 cut(s)	3240
BceAI	ACGGC	1 cut(s)	2723
BcgI	CGANNNNNNTGC	2 cut(s)	706, 740
BciT130I	CCWGG	4 cut(s)	926, 2589, 2596, 2735
BciVI	GTATCC	2 cut(s)	1103, 2248
BclI	TGATCA	2 cut(s)	2164, 3340
BcnI	CCSGG	5 cut(s)	221, 222, 742, 833, 1504
BfaI	CTAG	3 cut(s)	965, 1005, 1190
BfmI	CTRYAG	5 cut(s)	2421, 2461, 2889, 3355, 3513
BfoI	RGCGCY	1 cut(s)	371
BfuAI	ACCTGC	2 cut(s)	1311, 1402
BfuI	GTATCC	2 cut(s)	1103, 2248
BglII	AGATCT	1 cut(s)	1192
Bme1390I	CCNGG	9 cut(s)	221, 222, 742, 833, 926, 1504, 2589, 2596, 2735
Bme18I	GGWCC	4 cut(s)	469, 2487, 2731, 3209
BmeRI	GACNNNNNGTC	1 cut(s)	2952
BmeT110I	CYCGRG	1 cut(s)	220
BmgBI	CACGTC	2 cut(s)	628, 2687
BmgT120I	GGNCC	6 cut(s)	469, 1202, 2487, 2731, 3146, 3209
BmiI	GGNNCC	9 cut(s)	369, 471, 1002, 1204, 2488, 2489, 2593, 3210, 3571
BmrFI	CCNGG	9 cut(s)	221, 222, 742, 833, 926, 1504, 2589, 2596, 2735
BmrI	ACTGGG	2 cut(s)	1378, 2730
BmsI	GCATC	4 cut(s)	1445, 2326, 3001, 3340
BmuI	ACTGGG	2 cut(s)	1378, 2730
BoxI	GACNNNNGTC	1 cut(s)	2492
BpiI	GAAGAC	6 cut(s)	75, 628, 820, 1962, 2633, 2880
BpmI	CTGGAG	2 cut(s)	1422, 2628
Bpu10I	CCTNAGC	4 cut(s)	603, 1778, 2655, 3240
Bpu14I	TTCGAA	2 cut(s)	99, 2797
BpuEI	CTTGAG	1 cut(s)	3389
BpuMI	CCSGG	5 cut(s)	221, 222, 742, 833, 1504
BsaAI	YACGTR	1 cut(s)	2183
BsaBI	GATNNNNATC	2 cut(s)	1167, 2169
BsaHI	GRCGYC	2 cut(s)	368, 2512
BsaI	GGTCTC	5 cut(s)	1079, 1346, 2015, 3086, 3255
BsaWI	WCCGGW	1 cut(s)	2439
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	7 cut(s)	1064, 1211, 1503, 1958, 2080, 2810, 3242
Bse1I	ACTGG	6 cut(s)	1335, 1366, 1373, 2265, 2725, 3118
Bse21I	CCTNAGG	1 cut(s)	2076
Bse3DI	GCAATG	3 cut(s)	1931, 2637, 3138
Bse8I	GATNNNNATC	2 cut(s)	1167, 2169
BseBI	CCWGG	4 cut(s)	926, 2589, 2596, 2735
BseJI	GATNNNNATC	2 cut(s)	1167, 2169
BseLI	CCNNNNNNNGG	7 cut(s)	1064, 1211, 1503, 1958, 2080, 2810, 3242
BseMI	GCAATG	3 cut(s)	1931, 2637, 3138
BseNI	ACTGG	6 cut(s)	1335, 1366, 1373, 2265, 2725, 3118
BseRI	GAGGAG	4 cut(s)	53, 2033, 2093, 2663
BseSI	GKGCMC	1 cut(s)	1141
BseYI	CCCAGC	5 cut(s)	535, 713, 995, 1388, 1725
BsgI	GTGCAG	1 cut(s)	3445
Bsh1236I	CGCG	2 cut(s)	74, 2674
BshFI	GGCC	5 cut(s)	182, 1203, 1496, 3147, 3506
BshNI	GGYRCC	2 cut(s)	367, 1000
BsiHKAI	GWGCWC	3 cut(s)	620, 752, 1141
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	7 cut(s)	14, 221, 742, 832, 1504, 2329, 2440
BslFI	GGGAC	7 cut(s)	455, 682, 1405, 1524, 2500, 2860, 3258
BslI	CCNNNNNNNGG	7 cut(s)	1064, 1211, 1503, 1958, 2080, 2810, 3242
BsmFI	GGGAC	7 cut(s)	455, 682, 1405, 1524, 2500, 2860, 3258
BsmI	GAATGC	1 cut(s)	3531
BsnI	GGCC	5 cut(s)	182, 1203, 1496, 3147, 3506
Bso31I	GGTCTC	5 cut(s)	1079, 1346, 2015, 3086, 3255
BsoBI	CYCGRG	1 cut(s)	220
Bsp119I	TTCGAA	2 cut(s)	99, 2797
Bsp1286I	GDGCHC	4 cut(s)	620, 752, 838, 1141
Bsp1407I	TGTACA	3 cut(s)	497, 2056, 3214
Bsp19I	CCATGG	4 cut(s)	2202, 2310, 2882, 3507
BspANI	GGCC	5 cut(s)	182, 1203, 1496, 3147, 3506
BspFNI	CGCG	2 cut(s)	74, 2674
BspLI	GGNNCC	9 cut(s)	369, 471, 1002, 1204, 2488, 2489, 2593, 3210, 3571
BspMI	ACCTGC	2 cut(s)	1311, 1402
BspPI	GGATC	5 cut(s)	1176, 1621, 1739, 3184, 3214
BspQI	GCTCTTC	3 cut(s)	3, 18, 3063
BspT104I	TTCGAA	2 cut(s)	99, 2797
BspT107I	GGYRCC	2 cut(s)	367, 1000
BspTNI	GGTCTC	5 cut(s)	1079, 1346, 2015, 3086, 3255
BsrBI	CCGCTC	1 cut(s)	2457
BsrDI	GCAATG	3 cut(s)	1931, 2637, 3138
BsrGI	TGTACA	3 cut(s)	497, 2056, 3214
BsrI	ACTGG	6 cut(s)	1335, 1366, 1373, 2265, 2725, 3118
BssNI	GRCGYC	2 cut(s)	368, 2512
BssSI	CACGAG	4 cut(s)	1976, 2304, 3198, 3252
BssT1I	CCWWGG	7 cut(s)	556, 1248, 2202, 2310, 2882, 3142, 3507
Bst2BI	CACGAG	4 cut(s)	1976, 2304, 3198, 3252
Bst2UI	CCWGG	4 cut(s)	926, 2589, 2596, 2735
Bst6I	CTCTTC	8 cut(s)	3, 18, 96, 386, 638, 795, 2010, 3063
BstACI	GRCGYC	2 cut(s)	368, 2512
BstAPI	GCANNNNNTGC	1 cut(s)	1903
BstAUI	TGTACA	3 cut(s)	497, 2056, 3214
BstBAI	YACGTR	1 cut(s)	2183
BstBI	TTCGAA	2 cut(s)	99, 2797
BstDSI	CCRYGG	5 cut(s)	2202, 2310, 2882, 3304, 3507
BstEII	GGTNACC	1 cut(s)	224
BstFNI	CGCG	2 cut(s)	74, 2674
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	7 cut(s)	1319, 1385, 1731, 1783, 1903, 2360, 3308
BstNI	CCWGG	4 cut(s)	926, 2589, 2596, 2735
BstNSI	RCATGY	3 cut(s)	1064, 1569, 2881
BstPAI	GACNNNNGTC	1 cut(s)	2492
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	9 cut(s)	219, 220, 740, 831, 924, 1502, 2587, 2594, 2733
BstSFI	CTRYAG	5 cut(s)	2421, 2461, 2889, 3355, 3513
BstSLI	GKGCMC	1 cut(s)	1141
BstUI	CGCG	2 cut(s)	74, 2674
BstV2I	GAAGAC	6 cut(s)	75, 628, 820, 1962, 2633, 2880
BstX2I	RGATCY	3 cut(s)	1192, 3189, 3219
BstXI	CCANNNNNNTGG	1 cut(s)	3200
BstYI	RGATCY	3 cut(s)	1192, 3189, 3219
Bsu36I	CCTNAGG	1 cut(s)	2076
BsuI	GTATCC	2 cut(s)	1103, 2248
BsuRI	GGCC	5 cut(s)	182, 1203, 1496, 3147, 3506
BtgI	CCRYGG	5 cut(s)	2202, 2310, 2882, 3304, 3507
BtrI	CACGTC	2 cut(s)	628, 2687
BtsIMutI	CAGTG	7 cut(s)	1342, 1529, 2007, 2258, 2444, 2719, 3111
BveI	ACCTGC	2 cut(s)	1311, 1402
CaiI	CAGNNNCTG	1 cut(s)	127
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	6 cut(s)	469, 1202, 2487, 2731, 3146, 3209
Cfr9I	CCCGGG	1 cut(s)	220
CseI	GACGC	1 cut(s)	80
CsiI	ACCWGGT	1 cut(s)	2733
CspCI	CAANNNNNGTGG	2 cut(s)	2620, 2655
DinI	GGCGCC	1 cut(s)	369
DraI	TTTAAA	1 cut(s)	1419
DraIII	CACNNNGTG	1 cut(s)	2687
DriI	GACNNNNNGTC	1 cut(s)	2952
EaeI	YGGCCR	2 cut(s)	1494, 3504
Eam1104I	CTCTTC	8 cut(s)	3, 18, 96, 386, 638, 795, 2010, 3063
Eam1105I	GACNNNNNGTC	1 cut(s)	2952
EarI	CTCTTC	8 cut(s)	3, 18, 96, 386, 638, 795, 2010, 3063
EciI	GGCGGA	1 cut(s)	707
Ecl136II	GAGCTC	1 cut(s)	750
Eco130I	CCWWGG	7 cut(s)	556, 1248, 2202, 2310, 2882, 3142, 3507
Eco24I	GRGCYC	2 cut(s)	752, 838
Eco31I	GGTCTC	5 cut(s)	1079, 1346, 2015, 3086, 3255
Eco32I	GATATC	2 cut(s)	190, 1825
Eco47I	GGWCC	4 cut(s)	469, 2487, 2731, 3209
Eco53kI	GAGCTC	1 cut(s)	750
Eco57I	CTGAAG	5 cut(s)	750, 1575, 1824, 1974, 2031
Eco81I	CCTNAGG	1 cut(s)	2076
Eco88I	CYCGRG	1 cut(s)	220
Eco91I	GGTNACC	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	750
EcoO109I	RGGNCCY	3 cut(s)	469, 2487, 3209
EcoO65I	GGTNACC	1 cut(s)	224
EcoRI	GAATTC	3 cut(s)	511, 2799, 3412
EcoRII	CCWGG	4 cut(s)	924, 2587, 2594, 2733
EcoRV	GATATC	2 cut(s)	190, 1825
EcoT14I	CCWWGG	7 cut(s)	556, 1248, 2202, 2310, 2882, 3142, 3507
EcoT22I	ATGCAT	2 cut(s)	1438, 1933
EcoT38I	GRGCYC	2 cut(s)	752, 838
EgeI	GGCGCC	1 cut(s)	369
EheI	GGCGCC	1 cut(s)	369
ErhI	CCWWGG	7 cut(s)	556, 1248, 2202, 2310, 2882, 3142, 3507
FaqI	GGGAC	7 cut(s)	455, 682, 1405, 1524, 2500, 2860, 3258
FauI	CCCGC	4 cut(s)	554, 1549, 1779, 3075
FauNDI	CATATG	2 cut(s)	1432, 3174
FbaI	TGATCA	2 cut(s)	2164, 3340
FblI	GTMKAC	2 cut(s)	174, 1599
FriOI	GRGCYC	2 cut(s)	752, 838
FspBI	CTAG	3 cut(s)	965, 1005, 1190
GlaI	GCGC	1 cut(s)	369
GsaI	CCCAGC	5 cut(s)	539, 717, 999, 1392, 1729
GsuI	CTGGAG	2 cut(s)	1422, 2628
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	5 cut(s)	182, 1203, 1496, 3147, 3506
HapII	CCGG	7 cut(s)	14, 221, 742, 832, 1504, 2329, 2440
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	370
Hin1I	GRCGYC	2 cut(s)	368, 2512
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	2 cut(s)	175, 1300
HindII	GTYRAC	2 cut(s)	175, 1300
HindIII	AAGCTT	2 cut(s)	1216, 2701
HpaII	CCGG	7 cut(s)	14, 221, 742, 832, 1504, 2329, 2440
Hpy99I	CGWCG	3 cut(s)	50, 179, 2688
HpyCH4IV	ACGT	5 cut(s)	359, 627, 2182, 2512, 2686
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1319, 1385, 1731, 1783, 1903, 2360, 3308
HpySE526I	ACGT	5 cut(s)	359, 627, 2182, 2512, 2686
Hsp92I	GRCGYC	2 cut(s)	368, 2512
HspAI	GCGC	1 cut(s)	368
KasI	GGCGCC	1 cut(s)	367
KflI	GGGWCCC	1 cut(s)	2487
KpnI	GGTACC	1 cut(s)	1004
Ksp22I	TGATCA	2 cut(s)	2164, 3340
LguI	GCTCTTC	3 cut(s)	3, 18, 3063
LmnI	GCTCC	8 cut(s)	486, 532, 755, 868, 2314, 2462, 2647, 3569
LweI	GCATC	4 cut(s)	1445, 2326, 3001, 3340
MabI	ACCWGGT	1 cut(s)	2733
MaeI	CTAG	3 cut(s)	965, 1005, 1190
MaeII	ACGT	5 cut(s)	359, 627, 2182, 2512, 2686
MbiI	CCGCTC	1 cut(s)	2457
MflI	RGATCY	3 cut(s)	1192, 3189, 3219
MhlI	GDGCHC	4 cut(s)	620, 752, 838, 1141
MlsI	TGGCCA	2 cut(s)	1496, 3506
MluI	ACGCGT	1 cut(s)	72
MluNI	TGGCCA	2 cut(s)	1496, 3506
Mly113I	GGCGCC	1 cut(s)	368
MlyI	GAGTC	5 cut(s)	125, 311, 430, 704, 2907
MmeI	TCCRAC	3 cut(s)	223, 285, 1127
Mox20I	TGGCCA	2 cut(s)	1496, 3506
Mph1103I	ATGCAT	2 cut(s)	1438, 1933
MroXI	GAANNNNTTC	2 cut(s)	1053, 3416
MscI	TGGCCA	2 cut(s)	1496, 3506
MseI	TTAA	9 cut(s)	1257, 1317, 1418, 1716, 1769, 2046, 2349, 3324, 3386
MslI	CAYNNNNRTG	8 cut(s)	417, 452, 630, 1065, 1607, 3066, 3198, 3421
Msp20I	TGGCCA	2 cut(s)	1496, 3506
MspA1I	CMGCKG	6 cut(s)	127, 995, 1388, 1544, 1619, 2342
MspI	CCGG	7 cut(s)	14, 221, 742, 832, 1504, 2329, 2440
MspR9I	CCNGG	9 cut(s)	221, 222, 742, 833, 926, 1504, 2589, 2596, 2735
Mva1269I	GAATGC	1 cut(s)	3531
MvaI	CCWGG	4 cut(s)	926, 2589, 2596, 2735
MvnI	CGCG	2 cut(s)	74, 2674
MwoI	GCNNNNNNNGC	7 cut(s)	1319, 1385, 1731, 1783, 1903, 2360, 3308
NarI	GGCGCC	1 cut(s)	368
NciI	CCSGG	5 cut(s)	221, 222, 742, 833, 1504
NcoI	CCATGG	4 cut(s)	2202, 2310, 2882, 3507
NdeI	CATATG	2 cut(s)	1432, 3174
NlaIV	GGNNCC	9 cut(s)	369, 471, 1002, 1204, 2488, 2489, 2593, 3210, 3571
NmeAIII	GCCGAG	1 cut(s)	344
NsiI	ATGCAT	2 cut(s)	1438, 1933
NspI	RCATGY	3 cut(s)	1064, 1569, 2881
NspV	TTCGAA	2 cut(s)	99, 2797
OliI	CACNNNNGTG	2 cut(s)	452, 3066
PaeI	GCATGC	1 cut(s)	1569
PciI	ACATGT	1 cut(s)	1060
PciSI	GCTCTTC	3 cut(s)	3, 18, 3063
PcsI	WCGNNNNNNNCGW	4 cut(s)	42, 183, 329, 1870
PctI	GAATGC	1 cut(s)	3531
PdmI	GAANNNNTTC	2 cut(s)	1053, 3416
PfeI	GAWTC	5 cut(s)	206, 811, 949, 2396, 2410
PflFI	GACNNNGTC	1 cut(s)	301
PflMI	CCANNNNNTGG	2 cut(s)	1064, 2810
PfoI	TCCNGGA	2 cut(s)	740, 2587
PleI	GAGTC	5 cut(s)	125, 310, 430, 703, 2906
PluTI	GGCGCC	1 cut(s)	371
PpsI	GAGTC	5 cut(s)	125, 310, 430, 703, 2906
Ppu21I	YACGTR	1 cut(s)	2183
PpuMI	RGGWCCY	3 cut(s)	469, 2487, 3209
PscI	ACATGT	1 cut(s)	1060
PshAI	GACNNNNGTC	1 cut(s)	2492
PshBI	ATTAAT	2 cut(s)	2046, 2349
PsiI	TTATAA	3 cut(s)	401, 1910, 2385
Psp124BI	GAGCTC	1 cut(s)	752
Psp5II	RGGWCCY	3 cut(s)	469, 2487, 3209
Psp6I	CCWGG	4 cut(s)	924, 2587, 2594, 2733
PspEI	GGTNACC	1 cut(s)	224
PspFI	CCCAGC	5 cut(s)	535, 713, 995, 1388, 1725
PspGI	CCWGG	4 cut(s)	924, 2587, 2594, 2733
PspN4I	GGNNCC	9 cut(s)	369, 471, 1002, 1204, 2488, 2489, 2593, 3210, 3571
PspPI	GGNCC	6 cut(s)	469, 1202, 2487, 2731, 3146, 3209
PspPPI	RGGWCCY	3 cut(s)	469, 2487, 3209
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	3 cut(s)	1192, 3189, 3219
PsyI	GACNNNGTC	1 cut(s)	301
PvuII	CAGCTG	5 cut(s)	127, 995, 1388, 1619, 2342
RseI	CAYNNNNRTG	8 cut(s)	417, 452, 630, 1065, 1607, 3066, 3198, 3421
SacI	GAGCTC	1 cut(s)	752
SalI	GTCGAC	1 cut(s)	173
SapI	GCTCTTC	3 cut(s)	3, 18, 3063
SaqAI	TTAA	9 cut(s)	1257, 1317, 1418, 1716, 1769, 2046, 2349, 3324, 3386
Sau96I	GGNCC	6 cut(s)	469, 1202, 2487, 2731, 3146, 3209
SchI	GAGTC	5 cut(s)	125, 311, 430, 704, 2907
ScrFI	CCNGG	9 cut(s)	221, 222, 742, 833, 926, 1504, 2589, 2596, 2735
SduI	GDGCHC	4 cut(s)	620, 752, 838, 1141
SexAI	ACCWGGT	1 cut(s)	2733
SfaNI	GCATC	4 cut(s)	1445, 2326, 3001, 3340
SfcI	CTRYAG	5 cut(s)	2421, 2461, 2889, 3355, 3513
SfoI	GGCGCC	1 cut(s)	369
SfuI	TTCGAA	2 cut(s)	99, 2797
SinI	GGWCC	4 cut(s)	469, 2487, 2731, 3209
SmaI	CCCGGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	8 cut(s)	417, 452, 630, 1065, 1607, 3066, 3198, 3421
SmlI	CTYRAG	1 cut(s)	3404
SmoI	CTYRAG	1 cut(s)	3404
SphI	GCATGC	1 cut(s)	1569
SspDI	GGCGCC	1 cut(s)	367
SspI	AATATT	2 cut(s)	1349, 3046
SspMI	CTAG	3 cut(s)	965, 1005, 1190
SstI	GAGCTC	1 cut(s)	752
StyD4I	CCNGG	9 cut(s)	219, 220, 740, 831, 924, 1502, 2587, 2594, 2733
StyI	CCWWGG	7 cut(s)	556, 1248, 2202, 2310, 2882, 3142, 3507
TaiI	ACGT	5 cut(s)	362, 630, 2185, 2515, 2689
TaqI	TCGA	9 cut(s)	99, 138, 174, 192, 488, 802, 2036, 2797, 3420
TaqII	GACCGA	1 cut(s)	257
TatI	WGTACW	5 cut(s)	30, 497, 2056, 2274, 3214
TauI	GCSGC	3 cut(s)	185, 1786, 2293
TfiI	GAWTC	5 cut(s)	206, 811, 949, 2396, 2410
Tru1I	TTAA	9 cut(s)	1257, 1317, 1418, 1716, 1769, 2046, 2349, 3324, 3386
Tru9I	TTAA	9 cut(s)	1257, 1317, 1418, 1716, 1769, 2046, 2349, 3324, 3386
TscAI	CASTG	7 cut(s)	1342, 1529, 2014, 2265, 2451, 2719, 3118
TspDTI	ATGAA	8 cut(s)	136, 448, 559, 1873, 1916, 2423, 3353, 3405
TspGWI	ACGGA	5 cut(s)	473, 545, 783, 1817, 3041
TspMI	CCCGGG	1 cut(s)	220
TspRI	CASTG	7 cut(s)	1342, 1529, 2014, 2265, 2451, 2719, 3118
Tth111I	GACNNNGTC	1 cut(s)	301
Van91I	CCANNNNNTGG	2 cut(s)	1064, 2810
VneI	GTGCAC	1 cut(s)	1137
VpaK11BI	GGWCC	4 cut(s)	469, 2487, 2731, 3209
VspI	ATTAAT	2 cut(s)	2046, 2349
XceI	RCATGY	3 cut(s)	1064, 1569, 2881
XmaI	CCCGGG	1 cut(s)	220
XmiI	GTMKAC	2 cut(s)	174, 1599
XmnI	GAANNNNTTC	2 cut(s)	1053, 3416
XspI	CTAG	3 cut(s)	965, 1005, 1190
ZraI	GACGTC	1 cut(s)	2513
Zsp2I	ATGCAT	2 cut(s)	1438, 1933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.