Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000264.1

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Reverse (-)

176623 .. 182874

Gene Structure 6252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000264.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgttcttctccgacgattcgtcgaatcggaagcacgtggatttagggggacggagtatgaaggtgagggatgaaggatacggccgccaatcgcgctgccgtatcttctccactgcagcgaaggaggaccatgtttgctctcaaagcccgagccccctcgtcgccgctcttgccacccaagcctccttcgtctcccaggaacataaatttttactcgatttggtcaagtacgtcttccccaagcagttcgaggctcggactctcgaggaagctctcatgtcagggtctcctcctttgagttctagtggtagtagtggtgggggtggcggtcctgtgatattggagcttcctgttgataagataaggaggcctttgatgagaaccagaactaatgatccggtcaaggttcaagaactgatggatagcataagtgaaattggcctccaagtacctgtttctctggatgtcatcgctatgaagctccccagcgtcttgggctcccaacaatacgttgcaaaattcgacgtgggacaaaagaaactctccgcctttaaatccctgaaacctctgccgcccaccttcaagatctcaactccaggagtccagaaccggcggccccacccccagaacctgccggaaaaccaccgaaccggccaccggaagtatcgaaagtccctctgcccggttcgatgctttcctcccagccaactgctaccaaacttcaccagcagctgtagccggaccccagatcaccggagacaaaaattcatcaccggaatcggcctaaattggacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

265

Amino Acids

29.41

Weight (kDa)

9.95

Isoelectric Point (pI)

58.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	639
AccBSI	CCGCTC	1 cut(s)	167
AccII	CGCG	1 cut(s)	94
AciI	CCGC	6 cut(s)	85, 165, 327, 546, 572, 613
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	2 cut(s)	82, 652
AcsI	RAATTY	3 cut(s)	206, 518, 764
AcvI	CACGTG	1 cut(s)	37
AfaI	GTAC	2 cut(s)	230, 450
AfiI	CCNNNNNNNGG	2 cut(s)	657, 682
AgsI	TTSAA	2 cut(s)	410, 583
AhdI	GACNNNNNGTC	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	526
AjnI	CCWGG	2 cut(s)	195, 595
AloI	GAACNNNNNNTCC	2 cut(s)	379, 411
AluBI	AGCT	4 cut(s)	272, 346, 481, 732
AluI	AGCT	4 cut(s)	272, 346, 481, 732
Alw26I	GTCTC	3 cut(s)	196, 291, 751
AlwI	GGATC	1 cut(s)	389
AlwNI	CAGNNNCTG	2 cut(s)	631, 732
Ama87I	CYCGRG	2 cut(s)	148, 263
AoxI	GGCC	6 cut(s)	82, 368, 439, 614, 652, 781
ApeKI	GCWGC	3 cut(s)	96, 116, 729
ApoI	RAATTY	3 cut(s)	206, 518, 764
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	4 cut(s)	127, 329, 615, 741
AsuC2I	CCSGG	1 cut(s)	683
AsuHPI	GGTGA	4 cut(s)	76, 715, 743, 763
AvaI	CYCGRG	2 cut(s)	148, 263
AvaII	GGWCC	3 cut(s)	127, 329, 741
BanII	GRGCYC	2 cut(s)	155, 500
BbrPI	CACGTG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	226
BbvI	GCAGC	3 cut(s)	83, 128, 741
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	2 cut(s)	84, 97
BciT130I	CCWGG	2 cut(s)	197, 597
BciVI	GTATCC	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	683
BcoDI	GTCTC	3 cut(s)	196, 291, 751
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	2 cut(s)	114, 733
BfuAI	ACCTGC	1 cut(s)	639
BfuI	GTATCC	1 cut(s)	71
BglII	AGATCT	1 cut(s)	585
BisI	GCNGC	7 cut(s)	85, 97, 117, 165, 572, 614, 730
BlsI	GCNGC	7 cut(s)	86, 98, 118, 166, 573, 615, 731
Bme1390I	CCNGG	3 cut(s)	197, 597, 683
Bme18I	GGWCC	3 cut(s)	127, 329, 741
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmeT110I	CYCGRG	2 cut(s)	148, 263
BmgBI	CACGTC	1 cut(s)	526
BmgT120I	GGNCC	4 cut(s)	127, 329, 615, 741
BmiI	GGNNCC	3 cut(s)	499, 617, 743
BmrFI	CCNGG	3 cut(s)	197, 597, 683
BmsI	GCATC	1 cut(s)	680
BpiI	GAAGAC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	683
BsaAI	YACGTR	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	4 cut(s)	397, 657, 753, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	657, 682
Bse118I	RCCGGY	2 cut(s)	609, 650
BseBI	CCWGG	2 cut(s)	197, 597
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	76, 469
BseLI	CCNNNNNNNGG	2 cut(s)	657, 682
BseRI	GAGGAG	1 cut(s)	279
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	3 cut(s)	83, 128, 741
BseYI	CCCAGC	2 cut(s)	485, 701
Bsh1236I	CGCG	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	6 cut(s)	84, 370, 441, 616, 654, 783
BsiEI	CGRYCG	1 cut(s)	85
BsiHKCI	CYCGRG	2 cut(s)	148, 263
BsiSI	CCGG	9 cut(s)	398, 610, 635, 651, 658, 683, 739, 754, 774
BslFI	GGGAC	3 cut(s)	63, 543, 658
BslI	CCNNNNNNNGG	2 cut(s)	657, 682
BsmAI	GTCTC	3 cut(s)	196, 291, 751
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	3 cut(s)	63, 543, 658
BsnI	GGCC	6 cut(s)	84, 370, 441, 616, 654, 783
Bso31I	GGTCTC	1 cut(s)	291
BsoBI	CYCGRG	2 cut(s)	148, 263
Bsp1286I	GDGCHC	2 cut(s)	155, 500
Bsp143I	GATC	3 cut(s)	394, 585, 748
BspACI	CCGC	6 cut(s)	85, 165, 327, 546, 572, 613
BspANI	GGCC	6 cut(s)	84, 370, 441, 616, 654, 783
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	3 cut(s)	499, 617, 743
BspMAI	CTGCAG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	639
BspPI	GGATC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	291
BsrBI	CCGCTC	1 cut(s)	167
BsrFI	RCCGGY	2 cut(s)	609, 650
BssAI	RCCGGY	2 cut(s)	609, 650
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	394, 585, 748
Bst2UI	CCWGG	2 cut(s)	197, 597
BstBAI	YACGTR	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	76, 469
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	3 cut(s)	397, 588, 751
BstMAI	GTCTC	3 cut(s)	196, 291, 751
BstMBI	GATC	3 cut(s)	394, 585, 748
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 144, 170, 179, 495, 735
BstNI	CCWGG	2 cut(s)	197, 597
BstSCI	CCNGG	3 cut(s)	195, 595, 681
BstSFI	CTRYAG	2 cut(s)	114, 733
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	3 cut(s)	83, 128, 741
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	585
BstXI	CCANNNNNNTGG	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	585
BstZI	CGGCCG	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	6 cut(s)	84, 370, 441, 616, 654, 783
BtgZI	GCGATG	1 cut(s)	454
BtrI	CACGTC	1 cut(s)	526
BtsCI	GGATG	2 cut(s)	76, 469
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	639
CaiI	CAGNNNCTG	2 cut(s)	631, 732
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	2 cut(s)	609, 650
Cfr13I	GGNCC	4 cut(s)	127, 329, 615, 741
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	2 cut(s)	229, 449
CviAII	CATG	2 cut(s)	131, 277
CviQI	GTAC	2 cut(s)	229, 449
DpnI	GATC	3 cut(s)	396, 587, 750
DpnII	GATC	3 cut(s)	394, 585, 748
DraI	TTTAAA	1 cut(s)	553
DriI	GACNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	2 cut(s)	82, 652
EagI	CGGCCG	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	535
EclXI	CGGCCG	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	370
Eco24I	GRGCYC	2 cut(s)	155, 500
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	3 cut(s)	127, 329, 741
Eco52I	CGGCCG	1 cut(s)	82
Eco72I	CACGTG	1 cut(s)	37
Eco88I	CYCGRG	2 cut(s)	148, 263
EcoRII	CCWGG	2 cut(s)	195, 595
EcoT38I	GRGCYC	2 cut(s)	155, 500
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	2 cut(s)	134, 280
FaiI	YATR	6 cut(s)	59, 132, 204, 278, 428, 476
FalI	AAGNNNNNCTT	4 cut(s)	218, 250, 355, 387
FaqI	GGGAC	3 cut(s)	63, 543, 658
FatI	CATG	2 cut(s)	130, 276
Fnu4HI	GCNGC	7 cut(s)	85, 97, 117, 165, 572, 614, 730
FokI	GGATG	2 cut(s)	83, 476
FriOI	GRGCYC	2 cut(s)	155, 500
Fsp4HI	GCNGC	7 cut(s)	85, 97, 117, 165, 572, 614, 730
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	7 cut(s)	85, 97, 117, 165, 572, 614, 730
GsaI	CCCAGC	2 cut(s)	489, 705
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	6 cut(s)	84, 370, 441, 616, 654, 783
HapII	CCGG	9 cut(s)	398, 610, 635, 651, 658, 683, 739, 754, 774
HgaI	GACGC	1 cut(s)	478
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	134, 280
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	5 cut(s)	17, 25, 259, 600, 777
HpaII	CCGG	9 cut(s)	398, 610, 635, 651, 658, 683, 739, 754, 774
HphI	GGTGA	4 cut(s)	76, 715, 743, 763
Hpy188I	TCNGA	3 cut(s)	13, 30, 258
Hpy188III	TCNNGA	5 cut(s)	263, 410, 461, 583, 604
Hpy99I	CGWCG	4 cut(s)	17, 25, 164, 527
HpyAV	CCTTC	5 cut(s)	55, 68, 115, 196, 589
HpyCH4IV	ACGT	4 cut(s)	36, 231, 510, 525
HpyCH4V	TGCA	2 cut(s)	116, 515
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 144, 170, 179, 495, 735
HpySE526I	ACGT	4 cut(s)	36, 231, 510, 525
Hsp92II	CATG	2 cut(s)	134, 280
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	394, 585, 748
LmnI	GCTCC	3 cut(s)	343, 486, 503
Lsp1109I	GCAGC	3 cut(s)	83, 128, 741
LweI	GCATC	1 cut(s)	680
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	4 cut(s)	36, 231, 510, 525
MalI	GATC	3 cut(s)	396, 587, 750
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	3 cut(s)	394, 585, 748
MboII	GAAGA	2 cut(s)	97, 226
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	2 cut(s)	155, 500
MluCI	AATT	5 cut(s)	206, 435, 518, 764, 787
MlyI	GAGTC	2 cut(s)	253, 609
MmeI	TCCRAC	1 cut(s)	36
MseI	TTAA	2 cut(s)	552, 796
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	732
MspI	CCGG	9 cut(s)	398, 610, 635, 651, 658, 683, 739, 754, 774
MspR9I	CCNGG	3 cut(s)	197, 597, 683
MvaI	CCWGG	2 cut(s)	197, 597
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	6 cut(s)	93, 144, 170, 179, 495, 735
NciI	CCSGG	1 cut(s)	683
NdeII	GATC	3 cut(s)	394, 585, 748
NlaIII	CATG	2 cut(s)	134, 280
NlaIV	GGNNCC	3 cut(s)	499, 617, 743
PaeR7I	CTCGAG	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	17, 25, 777
PfoI	TCCNGGA	1 cut(s)	595
PkrI	GCNGC	7 cut(s)	86, 98, 118, 166, 573, 615, 731
PleI	GAGTC	2 cut(s)	253, 608
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	2 cut(s)	253, 608
Ppu21I	YACGTR	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	195, 595
PspCI	CACGTG	1 cut(s)	37
PspFI	CCCAGC	2 cut(s)	485, 701
PspGI	CCWGG	2 cut(s)	195, 595
PspN4I	GGNNCC	3 cut(s)	499, 617, 743
PspPI	GGNCC	4 cut(s)	127, 329, 615, 741
PstI	CTGCAG	1 cut(s)	118
PstNI	CAGNNNCTG	2 cut(s)	631, 732
PsuI	RGATCY	1 cut(s)	585
PvuII	CAGCTG	1 cut(s)	732
RsaI	GTAC	2 cut(s)	230, 450
RsaNI	GTAC	2 cut(s)	229, 449
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	2 cut(s)	552, 796
SatI	GCNGC	7 cut(s)	85, 97, 117, 165, 572, 614, 730
Sau3AI	GATC	3 cut(s)	394, 585, 748
Sau96I	GGNCC	4 cut(s)	127, 329, 615, 741
SchI	GAGTC	2 cut(s)	253, 609
ScrFI	CCNGG	3 cut(s)	197, 597, 683
SduI	GDGCHC	2 cut(s)	155, 500
SfaNI	GCATC	1 cut(s)	680
SfcI	CTRYAG	2 cut(s)	114, 733
Sfr274I	CTCGAG	1 cut(s)	263
SinI	GGWCC	3 cut(s)	127, 329, 741
SlaI	CTCGAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	5 cut(s)	206, 435, 518, 764, 787
SseBI	AGGCCT	1 cut(s)	370
SsiI	CCGC	6 cut(s)	85, 165, 327, 546, 572, 613
SspMI	CTAG	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	370
StyD4I	CCNGG	3 cut(s)	195, 595, 681
TaiI	ACGT	4 cut(s)	39, 234, 513, 528
TaqI	TCGA	7 cut(s)	23, 216, 249, 264, 522, 667, 688
TasI	AATT	5 cut(s)	206, 435, 518, 764, 787
TauI	GCSGC	4 cut(s)	87, 167, 574, 616
TfiI	GAWTC	3 cut(s)	17, 25, 777
Tru1I	TTAA	2 cut(s)	552, 796
Tru9I	TTAA	2 cut(s)	552, 796
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	3 cut(s)	96, 116, 729
TspDTI	ATGAA	4 cut(s)	74, 87, 491, 757
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	3 cut(s)	127, 329, 741
XapI	RAATTY	3 cut(s)	206, 518, 764
XhoI	CTCGAG	1 cut(s)	263
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.