Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Forward (+)

38268001 .. 38270488

Gene Structure 2488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1250400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCTCACTTTGTTCTGCAAGTCCCAAACAGCTTGAGAAGCTTCACTGTTTCTGCTTCTCTTTCATCCAATGGGTCTACTCCTTTGAGTTCTCGGGGGAGCAGTGGAGGTGGTGGTGGGCCAGTGATACTGGAGCTTCCTCTGGATAAGATAAGGCGGCCATTGATGAGAACCAGAAGTAACGATCCAAACAAGGTTCAAGAGCTCATGGATAGCATCCAAGAAATTGGCCTTCAAGTACCTATTGATGTGCTTGAGGTCGATGGAGCTTATTATGGTTTCTCTGGTTGTCATCGCTACGAGGCTCACCAGCGCCTTGGGCTCCCCACAATACGTTGCAAAATTAGACGTGGAACAAAAGAAACTCTCAGGCATCACCTCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

129

Amino Acids

14.14

Weight (kDa)

9.91

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParB_N	PF02195	44 - 126	3.2e-17	ParB N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	77
AciI	CCGC	2 cut(s)	157, 382
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	158
AfaI	GTAC	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	200, 236
AjiI	CACGTC	1 cut(s)	350
AluBI	AGCT	5 cut(s)	33, 42, 136, 205, 269
AluI	AGCT	5 cut(s)	33, 42, 136, 205, 269
Alw21I	GWGCWC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	3 cut(s)	119, 158, 229
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	299, 368
AvaI	CYCGRG	1 cut(s)	93
BanII	GRGCYC	2 cut(s)	207, 324
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	1 cut(s)	257
BfoI	RGCGCY	1 cut(s)	316
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	93
BmgBI	CACGTC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	323
BmsI	GCATC	2 cut(s)	225, 382
BpmI	CTGGAG	1 cut(s)	152
BpuEI	CTTGAG	2 cut(s)	55, 275
BsaJI	CCNNGG	1 cut(s)	316
Bse1I	ACTGG	2 cut(s)	122, 135
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	65, 216
BseMII	CTCAG	1 cut(s)	382
BseNI	ACTGG	2 cut(s)	122, 135
BshFI	GGCC	3 cut(s)	121, 160, 231
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	8
BsnI	GGCC	3 cut(s)	121, 160, 231
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	207, 324
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	2 cut(s)	157, 382
BspANI	GGCC	3 cut(s)	121, 160, 231
BspCNI	CTCAG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	122, 135
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	65, 216
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 319
BstXI	CCANNNNNNTGG	2 cut(s)	227, 317
BsuRI	GGCC	3 cut(s)	121, 160, 231
BtgZI	GCGATG	1 cut(s)	278
BtrI	CACGTC	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	65, 216
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	3 cut(s)	45, 109, 129
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	1 cut(s)	208
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	368
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	316
Eco24I	GRGCYC	2 cut(s)	207, 324
Eco53kI	GAGCTC	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	2 cut(s)	207, 324
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	1 cut(s)	211
FaiI	YATR	2 cut(s)	209, 276
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	2 cut(s)	52, 203
FriOI	GRGCYC	2 cut(s)	207, 324
Fsp4HI	GCNGC	1 cut(s)	158
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	3 cut(s)	121, 160, 231
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	1 cut(s)	211
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	40
HphI	GGTGA	2 cut(s)	299, 368
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188III	TCNNGA	2 cut(s)	143, 200
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	2 cut(s)	334, 349
HpyCH4V	TGCA	2 cut(s)	19, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 319
HpyF3I	CTNAG	1 cut(s)	368
HpySE526I	ACGT	2 cut(s)	334, 349
Hsp92II	CATG	1 cut(s)	211
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	4 cut(s)	99, 133, 266, 327
LpnPI	CCDG	7 cut(s)	116, 128, 135, 187, 270, 323, 355
LweI	GCATC	2 cut(s)	225, 382
MaeII	ACGT	2 cut(s)	334, 349
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	207, 324
MluCI	AATT	2 cut(s)	225, 342
MnlI	CCTC	4 cut(s)	101, 150, 250, 295
MspA1I	CMGCKG	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	39, 319
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	119
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SacI	GAGCTC	1 cut(s)	207
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	207, 324
SfaNI	GCATC	2 cut(s)	225, 382
SmlI	CTYRAG	2 cut(s)	34, 254
SmoI	CTYRAG	2 cut(s)	34, 254
Sse9I	AATT	2 cut(s)	225, 342
SsiI	CCGC	2 cut(s)	157, 382
SstI	GAGCTC	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	2 cut(s)	337, 352
TaqI	TCGA	1 cut(s)	261
TasI	AATT	2 cut(s)	225, 342
TauI	GCSGC	1 cut(s)	160
TscAI	CASTG	3 cut(s)	52, 109, 129
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	3 cut(s)	52, 109, 129
XmiI	GTMKAC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.