Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002818.1

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Forward (+)

7471 .. 9479

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002818.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgaaggatacggctgccaacagcgctgccgtatcttctccactgcagcgaaggaggaccatgtctgctctcaaagcccgaagctccctcgtcgctgctcttgccacccaagcctcctccgtctcccaggagcataaatttttacttgatttggccaagtacgtcttccccaagcagttcgaggctcagactctcgaggaagctctcatgtcagggtctcctcctttgagttctagtggtagtaatggtgggggtggtggtcctgtgatattggagcttcttgttgataagataaggaggcctttgatgagaaccagaactaatgatccggtcaaggttcaagaactgatggatagcataagtgaaattggcctccatgtacttgtttctctggatgtcatcgctatgaagctcaccagcgtcttgggctcccaacaatacgttgcaaaattcgacgtgggacaaaagaaactctccggtacttttgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

163

Amino Acids

17.42

Weight (kDa)

9.64

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	137, 449
AfaI	GTAC	3 cut(s)	161, 381, 481
AfeI	AGCGCT	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	341
AjiI	CACGTC	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AloI	GAACNNNNNNTCC	2 cut(s)	310, 342
AluBI	AGCT	4 cut(s)	84, 203, 277, 412
AluI	AGCT	4 cut(s)	84, 203, 277, 412
Alw26I	GTCTC	2 cut(s)	127, 222
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	194
Aor51HI	AGCGCT	1 cut(s)	25
AoxI	GGCC	3 cut(s)	153, 299, 370
ApeKI	GCWGC	4 cut(s)	14, 26, 46, 95
ApoI	RAATTY	2 cut(s)	137, 449
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	57, 260
AsuHPI	GGTGA	1 cut(s)	406
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	2 cut(s)	57, 260
BalI	TGGCCA	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	157
BbvI	GCAGC	3 cut(s)	13, 58, 82
BccI	CCATC	1 cut(s)	343
BceAI	ACGGC	2 cut(s)	14, 27
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	127, 222
BfaI	CTAG	2 cut(s)	234, 490
BfmI	CTRYAG	1 cut(s)	44
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	4 cut(s)	15, 27, 47, 96
BlsI	GCNGC	4 cut(s)	16, 28, 48, 97
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	2 cut(s)	57, 260
BmeT110I	CYCGRG	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	457
BmgT120I	GGNCC	2 cut(s)	57, 260
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	2 cut(s)	328, 476
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	200
BseRI	GAGGAG	2 cut(s)	106, 210
BseXI	GCAGC	3 cut(s)	13, 58, 82
BshFI	GGCC	3 cut(s)	155, 301, 372
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	329, 477
BslFI	GGGAC	1 cut(s)	474
BsmAI	GTCTC	2 cut(s)	127, 222
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	3 cut(s)	155, 301, 372
Bso31I	GGTCTC	1 cut(s)	222
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	1 cut(s)	325
BspANI	GGCC	3 cut(s)	155, 301, 372
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	48
BspPI	GGATC	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	400
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	2 cut(s)	127, 222
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 74, 101, 110, 426
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	44
BstV1I	GCAGC	3 cut(s)	13, 58, 82
BstV2I	GAAGAC	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	424
BsuRI	GGCC	3 cut(s)	155, 301, 372
BtgZI	GCGATG	1 cut(s)	385
BtrI	CACGTC	1 cut(s)	457
BtsCI	GGATG	1 cut(s)	400
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	57, 260
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	3 cut(s)	160, 380, 480
CviAII	CATG	3 cut(s)	61, 208, 377
CviQI	GTAC	3 cut(s)	160, 380, 480
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	431
Eco31I	GGTCTC	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	57, 260
Eco47III	AGCGCT	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	431
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	3 cut(s)	64, 211, 380
FaiI	YATR	6 cut(s)	62, 135, 209, 359, 378, 407
FalI	AAGNNNNNCTT	4 cut(s)	149, 181, 286, 318
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	3 cut(s)	60, 207, 376
Fnu4HI	GCNGC	4 cut(s)	15, 27, 47, 96
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	4 cut(s)	15, 27, 47, 96
FspBI	CTAG	2 cut(s)	234, 490
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	4 cut(s)	15, 27, 47, 96
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	155, 301, 372
HapII	CCGG	2 cut(s)	329, 477
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	64, 211, 380
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	2 cut(s)	329, 477
HphI	GGTGA	1 cut(s)	406
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	3 cut(s)	194, 341, 392
Hpy99I	CGWCG	2 cut(s)	95, 458
HpyAV	CCTTC	1 cut(s)	45
HpyCH4IV	ACGT	3 cut(s)	162, 441, 456
HpyCH4V	TGCA	2 cut(s)	46, 446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 74, 101, 110, 426
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	3 cut(s)	162, 441, 456
Hsp92II	CATG	3 cut(s)	64, 211, 380
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	4 cut(s)	89, 130, 274, 434
LpnPI	CCDG	8 cut(s)	113, 140, 198, 276, 328, 342, 377, 430
Lsp1109I	GCAGC	3 cut(s)	13, 58, 82
MaeI	CTAG	2 cut(s)	234, 490
MaeII	ACGT	3 cut(s)	162, 441, 456
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	2 cut(s)	27, 157
MhlI	GDGCHC	1 cut(s)	431
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	3 cut(s)	137, 366, 449
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	9 cut(s)	48, 98, 124, 127, 175, 190, 231, 291, 383
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	155
MspI	CCGG	2 cut(s)	329, 477
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	5 cut(s)	23, 74, 101, 110, 426
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	64, 211, 380
NlaIV	GGNNCC	1 cut(s)	430
PaeR7I	CTCGAG	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	301
PflFI	GACNNNGTC	1 cut(s)	61
PkrI	GCNGC	4 cut(s)	16, 28, 48, 97
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	2 cut(s)	57, 260
PstI	CTGCAG	1 cut(s)	48
PsyI	GACNNNGTC	1 cut(s)	61
RsaI	GTAC	3 cut(s)	161, 381, 481
RsaNI	GTAC	3 cut(s)	160, 380, 480
RseI	CAYNNNNRTG	1 cut(s)	404
SatI	GCNGC	4 cut(s)	15, 27, 47, 96
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	2 cut(s)	57, 260
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	431
SetI	ASST	8 cut(s)	86, 165, 205, 279, 339, 414, 444, 459
SfcI	CTRYAG	1 cut(s)	44
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	57, 260
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	137, 366, 449
SseBI	AGGCCT	1 cut(s)	301
SspMI	CTAG	2 cut(s)	234, 490
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	126
TaiI	ACGT	3 cut(s)	165, 444, 459
TaqI	TCGA	3 cut(s)	180, 195, 453
TasI	AATT	3 cut(s)	137, 366, 449
TatI	WGTACW	1 cut(s)	379
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	4 cut(s)	14, 26, 46, 95
TspDTI	ATGAA	2 cut(s)	17, 422
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	48
Tth111I	GACNNNGTC	1 cut(s)	61
VpaK11BI	GGWCC	2 cut(s)	57, 260
XapI	RAATTY	2 cut(s)	137, 449
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	2 cut(s)	234, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.