Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007157.1

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Forward (+)

14978 .. 15330

Gene Structure 353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007157.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atggccaattttgttctgcaagttccaaatagcctgaggagcttcaccatttcagcctctgcttcatctaatgggtctcctcctttgagttctagtggtagtagtggtgggggtggtggtcctgtgatattggagcttcctgttgataagataaggaggcctttgatgagaaccagagctaatgatccggtcaaggttcaagaactgatggatagcataagtgaaattggcctccaagtacctgtaagtattggtagcaaacccaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

89

Amino Acids

9.2

Weight (kDa)

9.68

Isoelectric Point (pI)

69.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	3 cut(s)	42, 136, 179
AluI	AGCT	3 cut(s)	42, 136, 179
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	59
AoxI	GGCC	3 cut(s)	3, 158, 229
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	187
Bse21I	CCTNAGG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	2 cut(s)	52, 69
BshFI	GGCC	3 cut(s)	5, 160, 231
BsiSI	CCGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	81
BsnI	GGCC	3 cut(s)	5, 160, 231
Bso31I	GGTCTC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	184
BspANI	GGCC	3 cut(s)	5, 160, 231
BspCNI	CTCAG	1 cut(s)	27
BspPI	GGATC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	81
BssMI	GATC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	39
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	5, 160, 231
CaiI	CAGNNNCTG	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	239
CviJI	RGCY	8 cut(s)	5, 33, 42, 56, 136, 160, 179, 231
CviKI_1	RGCY	8 cut(s)	5, 33, 42, 56, 136, 160, 179, 231
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	3
Eco147I	AGGCCT	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	119
Eco81I	CCTNAGG	1 cut(s)	35
FaiI	YATR	1 cut(s)	218
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FspBI	CTAG	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	5, 160, 231
HapII	CCGG	1 cut(s)	188
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	39, 133
LpnPI	CCDG	6 cut(s)	47, 135, 153, 187, 201, 255
MaeI	CTAG	1 cut(s)	93
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	7, 225, 265
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	5 cut(s)	30, 67, 90, 150, 242
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	39
NdeII	GATC	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	119
SetI	ASST	5 cut(s)	44, 138, 181, 198, 244
SinI	GGWCC	1 cut(s)	119
Sse9I	AATT	3 cut(s)	7, 225, 265
SseBI	AGGCCT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	160
TasI	AATT	3 cut(s)	7, 225, 265
TspDTI	ATGAA	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	119
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.