Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002548.1

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Forward (+)

57981 .. 59220

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002548.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgactaggctacttgatgtcatggaggaatatctcagctttaagcagtatcggtaccttaggttggatggacatacatctggtggtgatcatgggtctcctcctttgagttctagtggtagtagtggtgggggtggcggtcctgtgatattggagcttcctgttgataagataaggaggcctttgatgagaaccagaactaatgatccggtcaaggttcaagaactgatggatagcataagtgaaattggcctccaagtacctattgatgtgcttgaggtcgatggagtttattatggtttctctggatgtcatcgctatgaagctcaccagcgtcttgggctcccaacaatacgttgcaaaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

122

Amino Acids

13.53

Weight (kDa)

6.4

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	54
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	363
AfaI	GTAC	2 cut(s)	56, 261
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	221
AloI	GAACNNNNNNTCC	2 cut(s)	190, 222
AluBI	AGCT	3 cut(s)	39, 157, 326
AluI	AGCT	3 cut(s)	39, 157, 326
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	2 cut(s)	179, 250
ApoI	RAATTY	1 cut(s)	363
Asp718I	GGTACC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	98, 320
AvaII	GGWCC	1 cut(s)	140
AxyI	CCTNAGG	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	345
BccI	CCATC	3 cut(s)	62, 223, 278
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	2 cut(s)	6, 114
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	56, 344
BpuEI	CTTGAG	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse21I	CCTNAGG	1 cut(s)	59
BseGI	GGATG	2 cut(s)	73, 314
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	181, 252
BshNI	GGYRCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	181, 252
Bso31I	GGTCTC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	88, 205
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	2 cut(s)	181, 252
BspCNI	CTCAG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	56, 344
BspPI	GGATC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	102
BssMI	GATC	2 cut(s)	88, 205
BstDEI	CTNAG	2 cut(s)	35, 59
BstF5I	GGATG	2 cut(s)	73, 314
BstKTI	GATC	2 cut(s)	91, 208
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	2 cut(s)	88, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstXI	CCANNNNNNTGG	1 cut(s)	338
Bsu36I	CCTNAGG	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	181, 252
BtgZI	GCGATG	1 cut(s)	299
BtsCI	GGATG	2 cut(s)	73, 314
Cfr13I	GGNCC	1 cut(s)	140
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	55, 260
CviAII	CATG	2 cut(s)	22, 92
CviJI	RGCY	7 cut(s)	10, 39, 157, 181, 252, 326, 343
CviKI_1	RGCY	7 cut(s)	10, 39, 157, 181, 252, 326, 343
CviQI	GTAC	2 cut(s)	55, 260
DdeI	CTNAG	2 cut(s)	35, 59
DpnI	GATC	2 cut(s)	90, 207
DpnII	GATC	2 cut(s)	88, 205
Eco147I	AGGCCT	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	2 cut(s)	25, 95
FaiI	YATR	6 cut(s)	23, 75, 93, 239, 297, 321
FalI	AAGNNNNNCTT	2 cut(s)	166, 198
FatI	CATG	2 cut(s)	21, 91
FbaI	TGATCA	1 cut(s)	88
FokI	GGATG	2 cut(s)	80, 321
FriOI	GRGCYC	1 cut(s)	345
FspBI	CTAG	2 cut(s)	6, 114
HaeIII	GGCC	2 cut(s)	181, 252
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	25, 95
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	98, 320
Hpy188III	TCNNGA	2 cut(s)	221, 306
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	2 cut(s)	35, 59
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	2 cut(s)	25, 95
KpnI	GGTACC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	88, 205
LmnI	GCTCC	2 cut(s)	154, 348
LpnPI	CCDG	7 cut(s)	66, 156, 174, 208, 222, 291, 344
MaeI	CTAG	2 cut(s)	6, 114
MaeII	ACGT	1 cut(s)	355
MalI	GATC	2 cut(s)	90, 207
MboI	GATC	2 cut(s)	88, 205
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	2 cut(s)	246, 363
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	5 cut(s)	19, 111, 171, 263, 271
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	340
NdeII	GATC	2 cut(s)	88, 205
NlaIII	CATG	2 cut(s)	25, 95
NlaIV	GGNNCC	2 cut(s)	56, 344
PceI	AGGCCT	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	56, 344
PspPI	GGNCC	1 cut(s)	140
RsaI	GTAC	2 cut(s)	56, 261
RsaNI	GTAC	2 cut(s)	55, 260
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	88, 205
Sau96I	GGNCC	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	9 cut(s)	41, 60, 65, 159, 219, 265, 282, 328, 358
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	246, 363
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	2 cut(s)	6, 114
StuI	AGGCCT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	282
TasI	AATT	2 cut(s)	246, 363
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	336
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	1 cut(s)	363
XspI	CTAG	2 cut(s)	6, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.