Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Reverse (-)

64170151 .. 64171471

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00128400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAGTTGCGTGGACGTTAACCTAGCTCCGGAGATTCGAATTTCACGAGAATGTTCTTCTCCAACGATTCGTCGAATCGAAGCACGTGGATTTGGAGGGACGGAGTACGAAGGAGAGGATGAAGGATACGGCCGCCAACCGAGCTTCCGTATCTTCTCCACCGCAATGAAGGAGGACCATGTCCGCTCTCAAAGCCCGAAGCTCCCTCAATTTTGTGTTTCGTGGTCTCCTCCTTTGAGTTCTAGTGGTAGTAGTGGTGGGGGTGGTGGTCCCGTGATATTGGAGCTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.52

Weight (kDa)

5.79

Isoelectric Point (pI)

93.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	186
AccIII	TCCGGA	1 cut(s)	28
AciI	CCGC	3 cut(s)	133, 162, 184
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	39
AcvI	CACGTG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	28
AluBI	AGCT	4 cut(s)	26, 144, 202, 286
AluI	AGCT	4 cut(s)	26, 144, 202, 286
Alw26I	GTCTC	1 cut(s)	231
Aor13HI	TCCGGA	1 cut(s)	28
AoxI	GGCC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	175, 269
AsuII	TTCGAA	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	175, 269
BauI	CACGAG	1 cut(s)	45
BbrPI	CACGTG	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	145
BciVI	GTATCC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	2 cut(s)	23, 243
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme18I	GGWCC	2 cut(s)	175, 269
BmgT120I	GGNCC	2 cut(s)	175, 269
BmiI	GGNNCC	1 cut(s)	271
Bpu14I	TTCGAA	1 cut(s)	37
BsaAI	YACGTR	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	28
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	219
BseX3I	CGGCCG	1 cut(s)	130
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	112, 255
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	112, 255
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	28
BspACI	CCGC	3 cut(s)	133, 162, 184
BspANI	GGCC	1 cut(s)	132
BspEI	TCCGGA	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	271
BspT104I	TTCGAA	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	231
BsrBI	CCGCTC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	231
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 192
BstZI	CGGCCG	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	175, 269
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	6 cut(s)	26, 132, 144, 195, 202, 286
CviKI_1	RGCY	6 cut(s)	26, 132, 144, 195, 202, 286
CviQI	GTAC	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	130
EagI	CGGCCG	1 cut(s)	130
EclXI	CGGCCG	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	231
Eco47I	GGWCC	2 cut(s)	175, 269
Eco52I	CGGCCG	1 cut(s)	130
Eco72I	CACGTG	1 cut(s)	86
FaeI	CATG	1 cut(s)	182
FaiI	YATR	1 cut(s)	180
FaqI	GGGAC	2 cut(s)	112, 255
FatI	CATG	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	133
FspBI	CTAG	2 cut(s)	23, 243
GluI	GCNGC	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	3 cut(s)	34, 67, 75
HpaI	GTTAAC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	29
Hpy166II	GTNNAC	2 cut(s)	13, 19
Hpy188III	TCNNGA	2 cut(s)	29, 45
Hpy8I	GTNNAC	2 cut(s)	13, 19
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	3 cut(s)	104, 116, 163
HpyCH4IV	ACGT	2 cut(s)	15, 85
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 192
HpySE526I	ACGT	2 cut(s)	15, 85
Hsp92II	CATG	1 cut(s)	182
Kpn2I	TCCGGA	1 cut(s)	28
KspAI	GTTAAC	1 cut(s)	19
LmnI	GCTCC	3 cut(s)	31, 207, 283
LpnPI	CCDG	1 cut(s)	42
MaeI	CTAG	2 cut(s)	23, 243
MaeII	ACGT	2 cut(s)	15, 85
MbiI	CCGCTC	1 cut(s)	186
MboII	GAAGA	2 cut(s)	48, 145
MluCI	AATT	2 cut(s)	39, 209
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	5 cut(s)	89, 109, 166, 216, 240
MroI	TCCGGA	1 cut(s)	28
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	2 cut(s)	49, 164
MspI	CCGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	141, 192
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	34, 67, 75
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	134
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	86
PspCI	CACGTG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	2 cut(s)	175, 269
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	2 cut(s)	49, 164
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	133
Sau96I	GGNCC	2 cut(s)	175, 269
SetI	ASST	7 cut(s)	18, 24, 28, 88, 146, 204, 288
SfuI	TTCGAA	1 cut(s)	37
SinI	GGWCC	2 cut(s)	175, 269
SmiMI	CAYNNNNRTG	2 cut(s)	49, 164
Sse9I	AATT	2 cut(s)	39, 209
SsiI	CCGC	3 cut(s)	133, 162, 184
SspMI	CTAG	2 cut(s)	23, 243
TaiI	ACGT	2 cut(s)	18, 88
TaqI	TCGA	3 cut(s)	37, 73, 78
TasI	AATT	2 cut(s)	39, 209
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	3 cut(s)	34, 67, 75
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TspDTI	ATGAA	2 cut(s)	135, 182
TspGWI	ACGGA	2 cut(s)	116, 137
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	175, 269
XapI	RAATTY	1 cut(s)	39
XspI	CTAG	2 cut(s)	23, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.