Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015732.1

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 883

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015732.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 197 bp

ggtctccctctttgagttctagtggtagtagtggtgggggtggcggtcctgtgatattggagcttcctattgataagataaggaggcctttgatgagaaccagaactaatgatccggtcaaggttcaagaactgatggatagcataagtgaaattggcctccaagtacctgtacgtattggtaacaaactcaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

64

Amino Acids

6.77

Weight (kDa)

9.68

Isoelectric Point (pI)

75.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	1 cut(s)	106
AfaI	GTAC	2 cut(s)	167, 173
AgsI	TTSAA	1 cut(s)	127
AloI	GAACNNNNNNTCC	2 cut(s)	96, 128
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	106
AoxI	GGCC	2 cut(s)	85, 156
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
BccI	CCATC	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BsaAI	YACGTR	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	114
BshFI	GGCC	2 cut(s)	87, 158
BsiSI	CCGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	87, 158
Bso31I	GGTCTC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	2 cut(s)	87, 158
BspPI	GGATC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	8
BssMI	GATC	1 cut(s)	111
BstBAI	YACGTR	1 cut(s)	175
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	111
BstSNI	TACGTA	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	87, 158
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	166, 172
CviJI	RGCY	3 cut(s)	63, 87, 158
CviKI_1	RGCY	3 cut(s)	63, 87, 158
CviQI	GTAC	2 cut(s)	166, 172
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eco105I	TACGTA	1 cut(s)	175
Eco147I	AGGCCT	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	46
FaiI	YATR	1 cut(s)	145
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FspBI	CTAG	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	87, 158
HapII	CCGG	1 cut(s)	115
HpaII	CCGG	1 cut(s)	115
Hpy188III	TCNNGA	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	4 cut(s)	62, 114, 128, 182
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MluCI	AATT	2 cut(s)	152, 192
MnlI	CCTC	3 cut(s)	18, 77, 169
MspI	CCGG	1 cut(s)	115
NdeII	GATC	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	87
Ppu21I	YACGTR	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	2 cut(s)	167, 173
RsaNI	GTAC	2 cut(s)	166, 172
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	46
SetI	ASST	4 cut(s)	65, 125, 171, 177
SgeI	CNNG	8 cut(s)	32, 61, 113, 127, 132, 139, 175, 181
SinI	GGWCC	1 cut(s)	46
SnaBI	TACGTA	1 cut(s)	175
Sse9I	AATT	2 cut(s)	152, 192
SseBI	AGGCCT	1 cut(s)	87
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	87
TaiI	ACGT	1 cut(s)	177
TasI	AATT	2 cut(s)	152, 192
VpaK11BI	GGWCC	1 cut(s)	46
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.