Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005018.1

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Reverse (-)

23769 .. 24751

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005018.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgaggagcttcaccatttcagcttctgcttcatctaatgggtctcctcctttgagttctagtggtagtagtggtgggggtggcggtcctgtgatattggagcttcctgttgataagataaggaggcctttgatgagaaccagaactaatgatccggtcaaggttcaagaactgatggatatcataagtgaaattggcctccaagtacctgtttctctggatgtcatcgctatgaagctcaccagcgtcttaggctcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

86

Amino Acids

8.91

Weight (kDa)

8.25

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	146
AfaI	GTAC	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	167
AloI	GAACNNNNNNTCC	2 cut(s)	136, 168
AluBI	AGCT	4 cut(s)	9, 23, 103, 238
AluI	AGCT	4 cut(s)	9, 23, 103, 238
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	146
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	125, 196
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	4, 232
AvaII	GGWCC	1 cut(s)	86
BccI	CCATC	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	179
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	179
BseRI	GAGGAG	2 cut(s)	19, 36
BshFI	GGCC	2 cut(s)	127, 198
BsiSI	CCGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	127, 198
Bso31I	GGTCTC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	2 cut(s)	127, 198
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	48
BssMI	GATC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	127, 198
BtgZI	GCGATG	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	226
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	86
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	206
CviJI	RGCY	7 cut(s)	9, 23, 103, 127, 198, 238, 255
CviKI_1	RGCY	7 cut(s)	9, 23, 103, 127, 198, 238, 255
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	86
EcoRV	GATATC	1 cut(s)	181
FaiI	YATR	2 cut(s)	185, 233
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FokI	GGATG	1 cut(s)	233
FspBI	CTAG	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	127, 198
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	2 cut(s)	4, 232
Hpy188III	TCNNGA	2 cut(s)	167, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	3 cut(s)	6, 100, 260
LpnPI	CCDG	7 cut(s)	102, 120, 154, 168, 203, 222, 256
MaeI	CTAG	1 cut(s)	60
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MluCI	AATT	1 cut(s)	192
MnlI	CCTC	3 cut(s)	57, 117, 209
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	252
NdeII	GATC	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	86
PstNI	CAGNNNCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	230
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	86
SetI	ASST	6 cut(s)	11, 25, 105, 165, 211, 240
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	192
SseBI	AGGCCT	1 cut(s)	127
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	1 cut(s)	60
StuI	AGGCCT	1 cut(s)	127
TasI	AATT	1 cut(s)	192
TspDTI	ATGAA	2 cut(s)	21, 248
VpaK11BI	GGWCC	1 cut(s)	86
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.