Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002026

Physical Location & Seq

Genomic Coordinates Forward (+)

63910468 .. 63912540

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTTCTTCTCTTACGATTCGTCTAATCGGAAGCTCGTGGATTTGGGGGGACGGAGTACGAAGGAGAGGGATGAAGGATACGGCCGCCAACCGCGCTACCGTATCTTCTCCACTGCAGCGAAGGAGGACCATGTCTGCTCTCAAAGCCCGAAGCTCCCTCGTCGCCGCTCTCGCCACCCAAGCCTCCTCCGTTTAATTGGTTCCGATTTGGTTTTAACATTTGGTGTTTTCTTCTTCTTGTTGCGGTTTACTCGATTTGGCCAAGTACGTCTTCCTCAAGCGAGTTCGAGGCTCGGACTCTCGAGGAAGCTCTCATGTCGTTCTAGTGGTAGTAGTGGTGGGGGTGGCGGTCCTATGATATTGGAGCTTCTGTTGGCCTTTGATGAGAACCGAACTAATGATCCGGTCAAGGTTCAAGAACTGATGGATATCATAAGTGAAATTGGCCTCCAAGTACCTGTTTCTCTGGATGTCATCGCTATGAAGCTCACCAGCGTCTTAGGCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

169

Amino Acids

18.8

Weight (kDa)

10.15

Isoelectric Point (pI)

60.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31170 AT1G31170 AT1G31170 AT1G31170 AT1G31170
fragaria_vesca	FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430 FvH4_3g12430
malus_domestica	MD05G1250400.v1.1
prunus_persica	Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1 Prupe.4G113200_v2.0.a1
pyrus_communis	pycom05g22830
rosa_chinensis	RchiOBHm_Chr2g0126261 RchiOBHm_Chr4g0413841 RchiOBHm_Chr5g0020311
rosa_multiflora	Rmu_sc0002548.1_g000022 Rmu_sc0002818.1_g000002 Rmu_sc0005018.1_g000003 Rmu_sc0007157.1_g000006 Rmu_sc0015732.1_g000001 Rmu_ssc0000264.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057900 Rroxscaffold_2G00128400 Rroxscaffold_7G00213460
rosa_rugosa	Rorug03G0361100.1 Rorug05G0058500 Rorug05G0058500 Rorug05G0058600
rosa_samantha	Rh1AG093600 Rh1AG095300 Rh1AG115400 Rh2BG327600 Rh2CG316100 Rh5BG148500 Rh5CG160000 Rh6AG221500
rosa_wichuraiana	Rw1G007290 Rw4G014520 Rw5G013190 Rw6G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	168
AccII	CGCG	1 cut(s)	94
AciI	CCGC	5 cut(s)	85, 92, 166, 244, 348
AclWI	GGATC	1 cut(s)	395
AcoI	YGGCCR	2 cut(s)	82, 259
AfaI	GTAC	3 cut(s)	58, 267, 456
AgsI	TTSAA	1 cut(s)	416
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
AloI	GAACNNNNNNTCC	2 cut(s)	385, 417
AluBI	AGCT	5 cut(s)	34, 154, 310, 367, 487
AluI	AGCT	5 cut(s)	34, 154, 310, 367, 487
AlwI	GGATC	1 cut(s)	395
Ama87I	CYCGRG	1 cut(s)	301
AoxI	GGCC	4 cut(s)	82, 259, 375, 445
ApeKI	GCWGC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	2 cut(s)	127, 350
AsuHPI	GGTGA	1 cut(s)	481
AvaI	CYCGRG	1 cut(s)	301
AvaII	GGWCC	2 cut(s)	127, 350
BalI	TGGCCA	1 cut(s)	261
BauI	CACGAG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	1 cut(s)	418
BceAI	ACGGC	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	3 cut(s)	85, 117, 166
BlsI	GCNGC	3 cut(s)	86, 118, 167
Bme18I	GGWCC	2 cut(s)	127, 350
BmeT110I	CYCGRG	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	127, 350
BmiI	GGNNCC	2 cut(s)	202, 505
BpiI	GAAGAC	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bse8I	GATNNNNATC	1 cut(s)	428
BseGI	GGATG	2 cut(s)	76, 475
BseJI	GATNNNNATC	1 cut(s)	428
BseRI	GAGGAG	1 cut(s)	176
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	4 cut(s)	84, 261, 377, 447
BsiEI	CGRYCG	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	4 cut(s)	84, 261, 377, 447
BsoBI	CYCGRG	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	400
BspACI	CCGC	5 cut(s)	85, 92, 166, 244, 348
BspANI	GGCC	4 cut(s)	84, 261, 377, 447
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	202, 505
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	168
BssMI	GATC	1 cut(s)	400
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	499
BstF5I	GGATG	2 cut(s)	76, 475
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	400
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 144, 171, 180, 501
BstSFI	CTRYAG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	263
BstZI	CGGCCG	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	4 cut(s)	84, 261, 377, 447
BtgZI	GCGATG	1 cut(s)	460
BtsCI	GGATG	2 cut(s)	76, 475
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	127, 350
CseI	GACGC	1 cut(s)	484
Csp6I	GTAC	3 cut(s)	57, 266, 455
CviAII	CATG	2 cut(s)	131, 315
CviQI	GTAC	3 cut(s)	57, 266, 455
DdeI	CTNAG	1 cut(s)	499
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
EaeI	YGGCCR	2 cut(s)	82, 259
EagI	CGGCCG	1 cut(s)	82
EclXI	CGGCCG	1 cut(s)	82
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	127, 350
Eco52I	CGGCCG	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	430
FaeI	CATG	2 cut(s)	134, 318
FaiI	YATR	5 cut(s)	132, 316, 356, 434, 482
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	2 cut(s)	130, 314
Fnu4HI	GCNGC	3 cut(s)	85, 117, 166
FokI	GGATG	2 cut(s)	83, 482
Fsp4HI	GCNGC	3 cut(s)	85, 117, 166
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	3 cut(s)	85, 117, 166
HaeIII	GGCC	4 cut(s)	84, 261, 377, 447
HapII	CCGG	1 cut(s)	404
HgaI	GACGC	1 cut(s)	484
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	134, 318
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	2 cut(s)	17, 297
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	3 cut(s)	30, 205, 296
Hpy188III	TCNNGA	3 cut(s)	301, 416, 467
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	3 cut(s)	55, 68, 115
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 144, 171, 180, 501
HpyF3I	CTNAG	1 cut(s)	499
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	2 cut(s)	134, 318
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	3 cut(s)	159, 364, 509
LpnPI	CCDG	4 cut(s)	417, 452, 471, 505
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	268
MalI	GATC	1 cut(s)	402
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	1 cut(s)	400
MboII	GAAGA	4 cut(s)	97, 223, 226, 263
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	2 cut(s)	195, 441
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	291
MnlI	CCTC	9 cut(s)	60, 118, 168, 194, 197, 282, 285, 297, 458
Mox20I	TGGCCA	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	2 cut(s)	194, 215
MslI	CAYNNNNRTG	1 cut(s)	479
Msp20I	TGGCCA	1 cut(s)	261
MspI	CCGG	1 cut(s)	404
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	5 cut(s)	93, 144, 171, 180, 501
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	2 cut(s)	134, 318
NlaIV	GGNNCC	2 cut(s)	202, 505
PaeR7I	CTCGAG	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	131
PkrI	GCNGC	3 cut(s)	86, 118, 167
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	202, 505
PspPI	GGNCC	2 cut(s)	127, 350
PstI	CTGCAG	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	131
RsaI	GTAC	3 cut(s)	58, 267, 456
RsaNI	GTAC	3 cut(s)	57, 266, 455
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	2 cut(s)	194, 215
SatI	GCNGC	3 cut(s)	85, 117, 166
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	2 cut(s)	127, 350
SchI	GAGTC	1 cut(s)	291
SetI	ASST	8 cut(s)	36, 156, 271, 312, 369, 414, 460, 489
SfcI	CTRYAG	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	301
SinI	GGWCC	2 cut(s)	127, 350
SlaI	CTCGAG	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	2 cut(s)	276, 301
SmoI	CTYRAG	2 cut(s)	276, 301
Sse9I	AATT	2 cut(s)	195, 441
SsiI	CCGC	5 cut(s)	85, 92, 166, 244, 348
SspMI	CTAG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	3 cut(s)	253, 287, 302
TasI	AATT	2 cut(s)	195, 441
TauI	GCSGC	2 cut(s)	87, 168
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	194, 215
Tru9I	TTAA	2 cut(s)	194, 215
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	87, 497
TspGWI	ACGGA	2 cut(s)	67, 179
TspRI	CASTG	1 cut(s)	118
Tth111I	GACNNNGTC	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	127, 350
XhoI	CTCGAG	1 cut(s)	301
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.