Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007187

Physical Location & Seq

Genomic Coordinates Forward (+)

11181504 .. 11185396

Gene Structure 3893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3045 bp

ATGGAGAGAGGTGGTTATCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGTGGCCGTGGTTATGGCGGAGGCGGAGGAGGAGGAGAACAAGGTCGTGATCGTGGCTACGGCGGCGGAGAACAAGGTCGTGGTCGTGGCTCAGAGCGAGGCGGCGGAAATCGTGGTCAAGGTCGTGGTGAACAACAGGATTTTCGAAGCCAGAGTCAGCGGGGACCTCCGCCAGGTCACGGTGGCCGTGGGACGACGCAGTTCCAACAGCCTCGACCACAGGTGGCTCCGCAGCCGTCGCAGGCTCCGGCGAGTTATGCCGGTTCAGTAGGAGGAGTCGCTGGTAGAGGCGCGTGGGGTCGTAAGCCACAGGTTCCGTCTGATTCGGCTTCTCCGTCCACCAGCACCACCGTGGTTTCTGAACCCGTTCGTGTAGCTGAAGTTATGAATCTGAAGCCATCGGTGCAAGTTGCGACTTCTGATAGGAAAGAACCAATGAAGCGACCTGATAGAGGCGGAGTTGTGGCTGTGCGGCGTGTTAATCTATATGTGAATCATTATAAAGTGAATTTCAATCCTGAAAGTGTTATAAGACATTATGATGTTGAAATCAAAGGAGAAATTCCTACCAAGAAGGTTTCGAGGTTTGAGCTAGCTATGGTTAGGGACAAGGTGTTCACTGACAATCCCGATGAGTTTCCCTTAGCTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGTGCGGTTGAGTTACCTACGGGGTCATACAAGGTGGAGTATCCTAAAACTGAAGAGATGAGAGGTCGAAGCTATACGTTCACTATCAAACAGGTGAATGTGCTGAAGCTAGGTGACTTGAAAGAGTACATGACAGGGAGATCGTCTTTCAATCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGAAGGAGCATCCTTCCAAGTGTATGATCACTGTTGGTAAAAGCTTTTTCACTCGTGAAACTGAGCCAGATGAAGATTTTCGTTTCGGGGTTATAGCTGCGAAAGGGTATCGCCACACTCTGAAGCCCACAGCACAAGGTTTGTCTTTGTGTTTGGATTACTCGGTGTTGGCGTTCCGCAAAGCAATGTCGGTCATTGAATACCTGAAGTTGTACTTTAACTGGTCTGATATGCGTCAGTTTAGGAGGCGTGATGTGGAAGAGGAATTGATTGGTTTGAAAGTCACTGTCAATCATCGGAAGAACAAGCAGAAACTCACCATTGTAGGGCTGAGTATGCAAAACACAAAAGACATCAAATTTGATCTTATTGATCAAGAGGGAAACGAGCCGCCAAGGAAGACGTCCATTGTTGAGTATTTCAGGATAAAGTATGGAAGACACATTGTTCACAAGGATATACCTTGCTTGGATTTGGGAAAAAACGGTAGGCAAAATTTTGTGCCCATGGAATTCTGTGACTTGGTTGAGGGACAGATATATCCAAAGGATAACTTGGATAAAGATTCAGCTTTGTGGCTAAAAAAGTTGTCACTGGTCAATCCACAACAAAGGCAGAGGAATATAGATAAGATGATAAAGGCTCGTAATGGACCGAGCGGTGGTGAAATCATTGGAAACTTTGGATTGAAAGTGGATACAAACATGACACCGGTGGAAGGTCGTGTACTCAAGGCTCCATCATTGAAGTTGGCAGAGAGAGGGAGAGTTGTGCGTGAGGAACCCAACCCGAGACAGAACAACCAATGGAACCTTATGAAGAAGGGAGTCACAAGGGGATCTATAGTCAAGCATTGGGCTGTACTTGACTTCACTGCATCCGAGAGATTTAACAAGATGCCTAATGACTTTGTGGATAACCTTATTGATCGTTGTTGGAGACTTGGGATGCAGATGGAGGCTCCTATCGTTTACAAAACATCGAGAATGGAAACACTTTCTAATGGTAATGCTATTGAGGAATTGCTTCGATCCGTGATAGATGAAGCTTCTCGTAAGCATGGTGGGGCTCGTCCAACTCTTGTTCTGTGTGCTATGTCTCGGAAAGACGATGGCTATAAGACTCTGAAATGGATAGCCGAGACCAAACTTGGTCTGGTGACTCAGTGTTTCTTGACTGGTCCTGCCACTAAAGGAGGTGATCAGTACCGGGCAAATCTTGCCCTCAAGATGAACGCAAAGGTTGGTGGAAGCAATGTCGAGCTTATGGATACTTTCTCTTTCTTCAAAAAAGAGGATGAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTGCTCGGGACAAGATGAGCCCGTCCATTGTTGCTGTTGTGGGAACTCTTAACTGGCCTGAAGCAAATCGCTATGCAGCTAGAGTCATTGCCCAGCCTCACCGCAAAGAGGAAATACAAGGATTTGGCGACGCTTGTTTGGAGCTTGTCAAAGCTCATGTTCAGGCCACAGGGAAACGGCCTAACAAGATTGTGATATTCCGTGATGGTGTCAGCGATGCTCAGTTCGATATGGTTCTCAATGTGGAGTTGCTTGATGTTAAGCTAACTTTTGAGAAGAATGGTTACAATCCAAAGATAACGGTAATCGTAGCCCAGAAACGTCATCAAACCCGTTTCTTCCCAGCCACAAATAATGATGGAAGTGATAAGGGCAATGTGCCTTCAGGTACGGTTGTTGATACTAAAGTTATTCACCCGTATGAGTATGATTTCTACCTCTGCAGTCACCACGGAGGGATAGGGACAAGCAAACCGACTCATTACTACACTCTTTGGGACGAACTTGGATTCACTTCGGATCAGGTGCAGAAGCTCATCTTCGAGATGTGCTTCACTTTCACTCGCTGCACCAAACCCGTCTCTCTTGTTCCGCCGGTGTATTATGCTGACATGGTTGCTTTTAGAGGAAGGATGTACCACGAGGCAAGCTCTCGTGAGAAGAACTTTAAGCAGCCGCGGGGAGCGTCAACCTCTGCTGCTTCGCTTGCCTCTTCATTATCTTCTCTTACAATTGAGGACAAAGCGATTTTCAAGCTGCATGCAGAGCTTGAGAATGTTATGTTCTTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0016032 GO:0019048 GO:0035197 GO:0035821 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0061980 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

1014

Amino Acids

113.42

Weight (kDa)

9.5

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	174 - 306	1.9e-26	N-terminal domain of argonaute
ArgoL1	PF08699	316 - 366	1.6e-10	Argonaute linker 1 domain
PAZ	PF02170	371 - 493	6.5e-26	PAZ domain
ArgoL2	PF16488	509 - 555	4.9e-10	Argonaute linker 2 domain
Piwi	PF02171	667 - 962	3e-84	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31280 AT1G31290 AT1G31290 AT1G31290
fragaria_vesca	FvH4_3g11980
malus_domestica	MD05G1256100.v1.1 MD10G1236300.v1.1 MD10G1236400.v1.1
prunus_persica	Prupe.4G108000_v2.0.a1 Prupe.4G108100_v2.0.a1
pyrus_communis	pycom05g23500 pycom05g23510 pycom05g23520 pycom10g19770 pycom10g19780
rosa_chinensis	RchiOBHm_Chr5g0019581
rosa_laevigata	RLG00000032457
rosa_roxburghii	Rroxscaffold_1G00058500
rosa_rugosa	Rorug05G0052100 Rorug05G0052200
rosa_samantha	Rh5AG142700 Rh5BG141200 Rh5CG153300 Rh5DG141900
rosa_wichuraiana	Rw5G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	549, 578
AatII	GACGTC	1 cut(s)	1322
AccBSI	CCGCTC	1 cut(s)	1575
AccII	CGCG	3 cut(s)	341, 886, 2929
AclWI	GGATC	3 cut(s)	1762, 1941, 2778
AcoI	YGGCCR	3 cut(s)	37, 52, 232
AcsI	RAATTY	5 cut(s)	556, 609, 1274, 1411, 1427
AcuI	CTGAAG	8 cut(s)	447, 461, 801, 854, 1058, 1142, 2331, 2619
AcyI	GRCGYC	1 cut(s)	1319
AfaI	GTAC	7 cut(s)	857, 1130, 1644, 1779, 2123, 2641, 2888
AfiI	CCNNNNNNNGG	8 cut(s)	221, 227, 500, 1242, 1577, 1634, 2256, 2359
AgeI	ACCGGT	1 cut(s)	1627
AjnI	CCWGG	1 cut(s)	220
AleI	CACNNNNGTG	1 cut(s)	398
AloI	GAACNNNNNNTCC	2 cut(s)	647, 679
Alw26I	GTCTC	5 cut(s)	1702, 1849, 2019, 2051, 2836
AlwI	GGATC	3 cut(s)	1762, 1941, 2778
Ama87I	CYCGRG	2 cut(s)	1705, 2256
AoxI	GGCC	6 cut(s)	37, 52, 232, 2306, 2415, 2429
ApeKI	GCWGC	8 cut(s)	280, 1013, 2252, 2327, 2817, 2923, 2948, 3007
ApoI	RAATTY	5 cut(s)	556, 609, 1274, 1411, 1427
ArsI	GACNNNNNNTTYG	4 cut(s)	187, 219, 1259, 1291
AsiGI	ACCGGT	1 cut(s)	1627
Asp700I	GAANNNNTTC	4 cut(s)	414, 725, 993, 1941
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	3 cut(s)	212, 1568, 2096
AsuC2I	CCSGG	1 cut(s)	2126
AsuII	TTCGAA	1 cut(s)	193
AsuNHI	GCTAGC	1 cut(s)	640
AvaI	CYCGRG	2 cut(s)	1705, 2256
AvaII	GGWCC	3 cut(s)	212, 1568, 2096
BaeGI	GKGCMC	1 cut(s)	1422
BaeI	ACNNNNGTAYC	4 cut(s)	2631, 2643, 2664, 2676
BanII	GRGCYC	2 cut(s)	1987, 2273
BarI	GAAGNNNNNNTAC	4 cut(s)	1626, 1658, 2519, 2551
BauI	CACGAG	3 cut(s)	969, 2891, 2904
BbsI	GAAGAC	2 cut(s)	1322, 1360
BbvI	GCAGC	8 cut(s)	292, 1000, 2239, 2339, 2804, 2935, 2935, 2994
BccI	CCATC	8 cut(s)	29, 454, 704, 1663, 1864, 2021, 2450, 2603
BceAI	ACGGC	6 cut(s)	24, 39, 124, 219, 268, 2444
BciT130I	CCWGG	1 cut(s)	222
BciVI	GTATCC	3 cut(s)	780, 1606, 2179
BclI	TGATCA	3 cut(s)	942, 1288, 2116
BcnI	CCSGG	1 cut(s)	2126
BcoDI	GTCTC	5 cut(s)	1702, 1849, 2019, 2051, 2836
BfaI	CTAG	3 cut(s)	641, 839, 2331
BfmI	CTRYAG	2 cut(s)	1758, 2692
BfuI	GTATCC	3 cut(s)	780, 1606, 2179
Bme1390I	CCNGG	2 cut(s)	222, 2126
Bme18I	GGWCC	3 cut(s)	212, 1568, 2096
BmeT110I	CYCGRG	2 cut(s)	1705, 2256
BmgT120I	GGNCC	3 cut(s)	212, 1568, 2096
BmiI	GGNNCC	8 cut(s)	213, 276, 294, 363, 1653, 1698, 1727, 1878
BmrFI	CCNGG	2 cut(s)	222, 2126
BmsI	GCATC	5 cut(s)	934, 1802, 1803, 1854, 2458
BmtI	GCTAGC	1 cut(s)	644
BpiI	GAAGAC	2 cut(s)	1322, 1360
BplI	GAGNNNNNCTC	2 cut(s)	2885, 2917
Bpu10I	CCTNAGC	1 cut(s)	691
Bpu14I	TTCGAA	1 cut(s)	193
BpuEI	CTTGAG	3 cut(s)	1631, 2126, 3041
BpuMI	CCSGG	1 cut(s)	2126
BsaBI	GATNNNNATC	1 cut(s)	2241
BsaHI	GRCGYC	1 cut(s)	1319
BsaI	GGTCTC	1 cut(s)	2051
BsaJI	CCNNGG	8 cut(s)	40, 55, 235, 399, 1310, 1422, 2701, 2927
BsaWI	WCCGGW	1 cut(s)	1627
Bsc4I	CCNNNNNNNGG	8 cut(s)	221, 227, 500, 1242, 1577, 1634, 2256, 2359
Bse118I	RCCGGY	3 cut(s)	308, 1627, 2845
Bse1I	ACTGG	4 cut(s)	1142, 1515, 2098, 2309
Bse3DI	GCAATG	4 cut(s)	1107, 2176, 2337, 2632
Bse8I	GATNNNNATC	1 cut(s)	2241
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	8 cut(s)	40, 55, 235, 399, 1310, 1422, 2701, 2927
BseGI	GGATG	7 cut(s)	913, 925, 1793, 1869, 2218, 2245, 2889
BseJI	GATNNNNATC	1 cut(s)	2241
BseLI	CCNNNNNNNGG	8 cut(s)	221, 227, 500, 1242, 1577, 1634, 2256, 2359
BseMI	GCAATG	4 cut(s)	1107, 2176, 2337, 2632
BseMII	CTCAG	5 cut(s)	153, 969, 1238, 2093, 2486
BseNI	ACTGG	4 cut(s)	1142, 1515, 2098, 2309
BseRI	GAGGAG	5 cut(s)	36, 90, 93, 96, 336
BseSI	GKGCMC	1 cut(s)	1422
BseXI	GCAGC	8 cut(s)	292, 1000, 2239, 2339, 2804, 2935, 2935, 2994
BseYI	CCCAGC	2 cut(s)	2343, 2593
BsgI	GTGCAG	2 cut(s)	2798, 2803
Bsh1236I	CGCG	3 cut(s)	341, 886, 2929
BshFI	GGCC	6 cut(s)	39, 54, 234, 2308, 2417, 2431
BshTI	ACCGGT	1 cut(s)	1627
BsiHKCI	CYCGRG	2 cut(s)	1705, 2256
BsiSI	CCGG	5 cut(s)	296, 309, 1628, 2125, 2846
BslFI	GGGAC	7 cut(s)	225, 253, 668, 1461, 2273, 2728, 2762
BslI	CCNNNNNNNGG	8 cut(s)	221, 227, 500, 1242, 1577, 1634, 2256, 2359
BsmAI	GTCTC	5 cut(s)	1702, 1849, 2019, 2051, 2836
BsmBI	CGTCTC	1 cut(s)	2836
BsmFI	GGGAC	7 cut(s)	225, 253, 668, 1461, 2273, 2728, 2762
BsnI	GGCC	6 cut(s)	39, 54, 234, 2308, 2417, 2431
Bso31I	GGTCTC	1 cut(s)	2051
BsoBI	CYCGRG	2 cut(s)	1705, 2256
Bsp119I	TTCGAA	1 cut(s)	193
Bsp1286I	GDGCHC	3 cut(s)	1422, 1987, 2273
Bsp19I	CCATGG	1 cut(s)	1422
BspANI	GGCC	6 cut(s)	39, 54, 234, 2308, 2417, 2431
BspCNI	CTCAG	5 cut(s)	152, 970, 1239, 2092, 2485
BspFNI	CGCG	3 cut(s)	341, 886, 2929
BspLI	GGNNCC	8 cut(s)	213, 276, 294, 363, 1653, 1698, 1727, 1878
BspMAI	CTGCAG	1 cut(s)	2696
BspOI	GCTAGC	1 cut(s)	644
BspPI	GGATC	3 cut(s)	1762, 1941, 2778
BspT104I	TTCGAA	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	2051
BsrBI	CCGCTC	1 cut(s)	1575
BsrDI	GCAATG	4 cut(s)	1107, 2176, 2337, 2632
BsrFI	RCCGGY	3 cut(s)	308, 1627, 2845
BsrI	ACTGG	4 cut(s)	1142, 1515, 2098, 2309
BssAI	RCCGGY	3 cut(s)	308, 1627, 2845
BssECI	CCNNGG	8 cut(s)	40, 55, 235, 399, 1310, 1422, 2701, 2927
BssNI	GRCGYC	1 cut(s)	1319
BssSI	CACGAG	3 cut(s)	969, 2891, 2904
BssT1I	CCWWGG	2 cut(s)	1310, 1422
Bst2BI	CACGAG	3 cut(s)	969, 2891, 2904
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	7 cut(s)	230, 400, 949, 1204, 1403, 2554, 2644
Bst6I	CTCTTC	3 cut(s)	777, 1170, 2968
BstACI	GRCGYC	1 cut(s)	1319
BstAPI	GCANNNNNTGC	1 cut(s)	2135
BstBI	TTCGAA	1 cut(s)	193
BstC8I	GCNNGC	5 cut(s)	291, 642, 2899, 2958, 3012
BstDEI	CTNAG	6 cut(s)	139, 691, 978, 1247, 2079, 2472
BstDSI	CCRYGG	7 cut(s)	40, 55, 235, 399, 1422, 2701, 2927
BstENI	CCTNNNNNAGG	2 cut(s)	219, 498
BstF5I	GGATG	7 cut(s)	913, 925, 1793, 1869, 2218, 2245, 2889
BstFNI	CGCG	3 cut(s)	341, 886, 2929
BstHHI	GCGC	1 cut(s)	341
BstMAI	GTCTC	5 cut(s)	1702, 1849, 2019, 2051, 2836
BstMWI	GCNNNNNNNGC	9 cut(s)	111, 286, 305, 451, 701, 1252, 2135, 2957, 3016
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	3014
BstSCI	CCNGG	2 cut(s)	220, 2124
BstSFI	CTRYAG	2 cut(s)	1758, 2692
BstSLI	GKGCMC	1 cut(s)	1422
BstUI	CGCG	3 cut(s)	341, 886, 2929
BstV1I	GCAGC	8 cut(s)	292, 1000, 2239, 2339, 2804, 2935, 2935, 2994
BstV2I	GAAGAC	2 cut(s)	1322, 1360
BstX2I	RGATCY	1 cut(s)	1754
BstYI	RGATCY	1 cut(s)	1754
BsuI	GTATCC	3 cut(s)	780, 1606, 2179
BsuRI	GGCC	6 cut(s)	39, 54, 234, 2308, 2417, 2431
BtgI	CCRYGG	7 cut(s)	40, 55, 235, 399, 1422, 2701, 2927
BtgZI	GCGATG	1 cut(s)	2481
BtsCI	GGATG	7 cut(s)	913, 925, 1793, 1869, 2218, 2245, 2889
BtsI	GCAGTG	1 cut(s)	1788
BtsIMutI	CAGTG	7 cut(s)	666, 736, 945, 1200, 1508, 1788, 2087
Cac8I	GCNNGC	5 cut(s)	291, 642, 2899, 2958, 3012
CfoI	GCGC	1 cut(s)	341
Cfr10I	RCCGGY	3 cut(s)	308, 1627, 2845
Cfr13I	GGNCC	3 cut(s)	212, 1568, 2096
Cfr42I	CCGCGG	1 cut(s)	2930
CseI	GACGC	4 cut(s)	253, 1139, 2390, 2925
Csp6I	GTAC	7 cut(s)	856, 1129, 1643, 1778, 2122, 2640, 2887
CspAI	ACCGGT	1 cut(s)	1627
CviAII	CATG	8 cut(s)	859, 1423, 1621, 1976, 2221, 2408, 2863, 3011
CviQI	GTAC	7 cut(s)	856, 1129, 1643, 1778, 2122, 2640, 2887
DdeI	CTNAG	6 cut(s)	139, 691, 978, 1247, 2079, 2472
EaeI	YGGCCR	3 cut(s)	37, 52, 232
Eam1104I	CTCTTC	3 cut(s)	777, 1170, 2968
EarI	CTCTTC	3 cut(s)	777, 1170, 2968
EciI	GGCGGA	7 cut(s)	81, 87, 129, 168, 207, 519, 2832
Eco130I	CCWWGG	2 cut(s)	1310, 1422
Eco24I	GRGCYC	2 cut(s)	1987, 2273
Eco31I	GGTCTC	1 cut(s)	2051
Eco47I	GGWCC	3 cut(s)	212, 1568, 2096
Eco57I	CTGAAG	8 cut(s)	447, 461, 801, 854, 1058, 1142, 2331, 2619
Eco88I	CYCGRG	2 cut(s)	1705, 2256
EcoNI	CCTNNNNNAGG	2 cut(s)	219, 498
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	1427
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	2 cut(s)	1310, 1422
EcoT38I	GRGCYC	2 cut(s)	1987, 2273
ErhI	CCWWGG	2 cut(s)	1310, 1422
Esp3I	CGTCTC	1 cut(s)	2836
FaeI	CATG	8 cut(s)	862, 1426, 1624, 1979, 2224, 2411, 2866, 3014
FalI	AAGNNNNNCTT	6 cut(s)	1115, 1147, 1454, 1486, 2774, 2806
FaqI	GGGAC	7 cut(s)	225, 253, 668, 1461, 2273, 2728, 2762
FatI	CATG	8 cut(s)	858, 1422, 1620, 1975, 2220, 2407, 2862, 3010
FauI	CCCGC	3 cut(s)	201, 2257, 2922
FbaI	TGATCA	3 cut(s)	942, 1288, 2116
FokI	GGATG	7 cut(s)	912, 920, 1780, 1876, 2225, 2232, 2896
FriOI	GRGCYC	2 cut(s)	1987, 2273
FspBI	CTAG	3 cut(s)	641, 839, 2331
GlaI	GCGC	1 cut(s)	340
GsaI	CCCAGC	2 cut(s)	2347, 2597
HaeIII	GGCC	6 cut(s)	39, 54, 234, 2308, 2417, 2431
HapII	CCGG	5 cut(s)	296, 309, 1628, 2125, 2846
HgaI	GACGC	4 cut(s)	253, 1139, 2390, 2925
HhaI	GCGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	1319
Hin1II	CATG	8 cut(s)	862, 1426, 1624, 1979, 2224, 2411, 2866, 3014
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	1 cut(s)	2940
HindII	GTYRAC	1 cut(s)	2940
HindIII	AAGCTT	2 cut(s)	958, 1962
HpaII	CCGG	5 cut(s)	296, 309, 1628, 2125, 2846
Hpy166II	GTNNAC	8 cut(s)	179, 387, 666, 810, 1366, 1643, 1888, 2940
Hpy8I	GTNNAC	8 cut(s)	179, 387, 666, 810, 1366, 1643, 1888, 2940
Hpy99I	CGWCG	3 cut(s)	247, 289, 2384
HpyAV	CCTTC	7 cut(s)	616, 913, 939, 1628, 1732, 2643, 2874
HpyCH4III	ACNGT	7 cut(s)	230, 400, 949, 1204, 1403, 2554, 2644
HpyCH4IV	ACGT	3 cut(s)	806, 1319, 2572
HpyF10VI	GCNNNNNNNGC	9 cut(s)	111, 286, 305, 451, 701, 1252, 2135, 2957, 3016
HpyF3I	CTNAG	6 cut(s)	139, 691, 978, 1247, 2079, 2472
HpySE526I	ACGT	3 cut(s)	806, 1319, 2572
Hsp92I	GRCGYC	1 cut(s)	1319
Hsp92II	CATG	8 cut(s)	862, 1426, 1624, 1979, 2224, 2411, 2866, 3014
HspAI	GCGC	1 cut(s)	339
Ksp22I	TGATCA	3 cut(s)	942, 1288, 2116
KspI	CCGCGG	1 cut(s)	2930
LmnI	GCTCC	7 cut(s)	280, 298, 922, 1657, 1882, 2392, 2933
Lsp1109I	GCAGC	8 cut(s)	292, 1000, 2239, 2339, 2804, 2935, 2935, 2994
LweI	GCATC	5 cut(s)	934, 1802, 1803, 1854, 2458
MaeI	CTAG	3 cut(s)	641, 839, 2331
MaeII	ACGT	3 cut(s)	806, 1319, 2572
MbiI	CCGCTC	1 cut(s)	1575
MfeI	CAATTG	1 cut(s)	2982
MflI	RGATCY	1 cut(s)	1754
MhlI	GDGCHC	3 cut(s)	1422, 1987, 2273
MluCI	AATT	8 cut(s)	556, 609, 1181, 1274, 1411, 1427, 1937, 2982
MlyI	GAGTC	7 cut(s)	211, 333, 1752, 2032, 2071, 2343, 2722
MmeI	TCCRAC	3 cut(s)	277, 1832, 2015
MroXI	GAANNNNTTC	4 cut(s)	414, 725, 993, 1941
MseI	TTAA	6 cut(s)	528, 1134, 1806, 2301, 2511, 2919
MslI	CAYNNNNRTG	3 cut(s)	398, 588, 2670
MspA1I	CMGCKG	3 cut(s)	208, 2252, 2929
MspI	CCGG	5 cut(s)	296, 309, 1628, 2125, 2846
MspR9I	CCNGG	2 cut(s)	222, 2126
MunI	CAATTG	1 cut(s)	2982
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	3 cut(s)	341, 886, 2929
MwoI	GCNNNNNNNGC	9 cut(s)	111, 286, 305, 451, 701, 1252, 2135, 2957, 3016
NciI	CCSGG	1 cut(s)	2126
NcoI	CCATGG	1 cut(s)	1422
NheI	GCTAGC	1 cut(s)	640
NlaIII	CATG	8 cut(s)	862, 1426, 1624, 1979, 2224, 2411, 2866, 3014
NlaIV	GGNNCC	8 cut(s)	213, 276, 294, 363, 1653, 1698, 1727, 1878
NmeAIII	GCCGAG	1 cut(s)	2080
NmuCI	GTSAC	8 cut(s)	224, 842, 1198, 1433, 1506, 1744, 2074, 2696
NspI	RCATGY	1 cut(s)	3014
NspV	TTCGAA	1 cut(s)	193
OliI	CACNNNNGTG	1 cut(s)	398
PaeI	GCATGC	1 cut(s)	3014
PcsI	WCGNNNNNNNCGW	3 cut(s)	25, 380, 1085
PdmI	GAANNNNTTC	4 cut(s)	414, 725, 993, 1941
PfeI	GAWTC	5 cut(s)	371, 436, 541, 1481, 2760
PinAI	ACCGGT	1 cut(s)	1627
PleI	GAGTC	7 cut(s)	210, 332, 1751, 2032, 2071, 2342, 2722
PpsI	GAGTC	7 cut(s)	210, 332, 1751, 2032, 2071, 2342, 2722
PpuMI	RGGWCCY	1 cut(s)	212
PsiI	TTATAA	2 cut(s)	549, 578
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	220
PspFI	CCCAGC	2 cut(s)	2343, 2593
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	8 cut(s)	213, 276, 294, 363, 1653, 1698, 1727, 1878
PspPI	GGNCC	3 cut(s)	212, 1568, 2096
PspPPI	RGGWCCY	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	2696
PsuI	RGATCY	1 cut(s)	1754
RsaI	GTAC	7 cut(s)	857, 1130, 1644, 1779, 2123, 2641, 2888
RsaNI	GTAC	7 cut(s)	856, 1129, 1643, 1778, 2122, 2640, 2887
RseI	CAYNNNNRTG	3 cut(s)	398, 588, 2670
SacII	CCGCGG	1 cut(s)	2930
SaqAI	TTAA	6 cut(s)	528, 1134, 1806, 2301, 2511, 2919
Sau96I	GGNCC	3 cut(s)	212, 1568, 2096
SchI	GAGTC	7 cut(s)	211, 333, 1752, 2032, 2071, 2343, 2722
ScrFI	CCNGG	2 cut(s)	222, 2126
SduI	GDGCHC	3 cut(s)	1422, 1987, 2273
SfaNI	GCATC	5 cut(s)	934, 1802, 1803, 1854, 2458
SfcI	CTRYAG	2 cut(s)	1758, 2692
Sfr303I	CCGCGG	1 cut(s)	2930
SfuI	TTCGAA	1 cut(s)	193
SgrAI	CRCCGGYG	2 cut(s)	1627, 2845
SgrBI	CCGCGG	1 cut(s)	2930
SinI	GGWCC	3 cut(s)	212, 1568, 2096
SmiMI	CAYNNNNRTG	3 cut(s)	398, 588, 2670
SmlI	CTYRAG	3 cut(s)	1646, 2141, 3020
SmoI	CTYRAG	3 cut(s)	1646, 2141, 3020
SphI	GCATGC	1 cut(s)	3014
Sse9I	AATT	8 cut(s)	556, 609, 1181, 1274, 1411, 1427, 1937, 2982
SspMI	CTAG	3 cut(s)	641, 839, 2331
StyD4I	CCNGG	2 cut(s)	220, 2124
StyI	CCWWGG	2 cut(s)	1310, 1422
TaaI	ACNGT	7 cut(s)	230, 400, 949, 1204, 1403, 2554, 2644
TaiI	ACGT	3 cut(s)	809, 1322, 2575
TaqII	GACCGA	2 cut(s)	1096, 1585
TasI	AATT	8 cut(s)	556, 609, 1181, 1274, 1411, 1427, 1937, 2982
TatI	WGTACW	4 cut(s)	855, 1128, 1642, 1777
TauI	GCSGC	5 cut(s)	114, 153, 523, 1309, 2929
TfiI	GAWTC	5 cut(s)	371, 436, 541, 1481, 2760
Tru1I	TTAA	6 cut(s)	528, 1134, 1806, 2301, 2511, 2919
Tru9I	TTAA	6 cut(s)	528, 1134, 1806, 2301, 2511, 2919
TscAI	CASTG	7 cut(s)	673, 736, 952, 1207, 1515, 1795, 2087
TseFI	GTSAC	8 cut(s)	224, 842, 1198, 1433, 1506, 1744, 2074, 2696
TseI	GCWGC	8 cut(s)	280, 1013, 2252, 2327, 2817, 2923, 2948, 3007
Tsp45I	GTSAC	8 cut(s)	224, 842, 1198, 1433, 1506, 1744, 2074, 2696
TspDTI	ATGAA	9 cut(s)	449, 500, 932, 1002, 1748, 1974, 2162, 2215, 2955
TspGWI	ACGGA	5 cut(s)	354, 372, 1939, 2441, 2718
TspRI	CASTG	7 cut(s)	673, 736, 952, 1207, 1515, 1795, 2087
VpaK11BI	GGWCC	3 cut(s)	212, 1568, 2096
XagI	CCTNNNNNAGG	2 cut(s)	219, 498
XapI	RAATTY	5 cut(s)	556, 609, 1274, 1411, 1427
XceI	RCATGY	1 cut(s)	3014
XcmI	CCANNNNNNNNNTGG	2 cut(s)	397, 2068
XmnI	GAANNNNTTC	4 cut(s)	414, 725, 993, 1941
XspI	CTAG	3 cut(s)	641, 839, 2331
ZraI	GACGTC	1 cut(s)	1320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.