Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007187

Physical Location & Seq

Genomic Coordinates Reverse (-)

14201656 .. 14206639

Gene Structure 4984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG153300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3183 bp

ATGGCCGTAACGGCGGTTACGGTGGCAGAGGGAACAGCGGAGGAGAGAGAGGGAGAGGCAGTTATGGTAACAGAGGAGGGAGAGTTGGCGGTTATGCTGACGTGGTTTACGGCGGTCGAGGAGAGAGAGGAAGAGGCGGTTATGGCGGCGGCGGCGGCGGCGGTTACAACCGTCAACAACCGCCGCAGCAAGATCAGCAGTGGAATAATCAGAATCGCGGCCAGCCTGGGAGGTCTGATCAGCAAACTTGGAGGTCTTCTTCTTCTTCTCAGCCGCAAGATCAGCAGTCGGGGAGGTATTCGGCCTCTTCTCAACCACAGGATCAGCAGCCTTGGAGGTCTTCTGGTCAACCGCCACAGGAGCAGCAGTGGAGTCAGAATCGAGGCCAGCCTCGGAGGACTTCTCCGGCACCGGCACCGGCACCGTCTTCTTCTTCTTCTTCATCTCCTTCTCCAACCAAGAACAGTCTTGCTGACGCTGTTACTGATCGTACTTCCTGTTTTGTTCTATGTAGACGCTGTTGTTTCTGGAGTGCAATCACTGAAAATTTCAAAGCAGACATCTCCACCATCTCCGTTGAACAGTGCAGACAAACTTCTACCTGTGAGACGACCTGATCAGGGAGGCACAAAGGCTGTCCAAACTGTTAGGCTTCGTGCTAATCACTTCAATGTCTCCTACAATCCTCAGAGTACTATAATGCACTATGATGTTAATGTCAAACCAGTGAATGCTACAAGGAATGGCAGACCAGTTAGAATTATGAAGTCTGATCTTGCTGCAATCAGAAACAAGTTGTCCTCTGATAATCCTTCAAAATTTCCATTATTGATGACTGCATATGATGGTGAGAAGAATATCTTTAGTGCTGTGACATTACCCACTGGAGAGTTTAAGGTGGAGGTTCCTGAGGAAGAAGGCACACGCATAAGTTCGTATATAGTCACTATAAAACTTGTAAATGAGCTCAAGCTTTGCAAGTTGAAGGAGTACTTAAGTGGTCAGCTGTTGTCTATCCCTCGTGATATATTGCAGGGAATGGATTTAGTGATGAAGGAGAATCCGACTCGGCGGTTGATTCCTGTTGGCCGCAGCTTTTACCCTACCGAATTTAATCCAGACGATGACCTTGGACAGGGTACTGCTGCATTTAGAGGGTTTCAGCATAGTTTAAGGCTCACTTCCCAGGGTCCTGCTATGTGTCTGGACTACTCAGTCTTGGCATTTCATAAGCGCATGCCAGTTATAGATTTTCTCCATGAAAAGATAAGGAATTTTACTTTAAATAATTTCAGGAGGTTTAAGAGAGATGTTGAGAATGTTTTAAGGGGATTGAAAGTTACTGTGACTCATCGTCCAACCAAGCAGAAGTATGTTATCAAGGGGCTAACTGATAGGAATGCAGGGGACATTACATTTGAAGCTGTTGATGTTGATGGCCAGGTTCCACCTAGAAGGCTTAGACTTGTTGATTATTTCAGAGACAAATACAAGGATATCAAGTACAAAGACATTCCCTGCTTAGATTTGGGGAAAAATGGTAGGAGGAATGATACACCGTTGGAATTTTGTGTCTTAGTTGAAGGGCAAAGATACCCTAAGGAGCAGTTGGGCAGAGATGCAGCCATTATGTTGAAGAACTTATCATTGGTTGCACCAGGGGTTAGAGAGAACAACATACGCAACATGGTACGGTCGGGAGATGGACCTTGTGGTGGCGGCATTATCCAGAACTTTGGAATTGAAGTCAACATGAATATGACACAAGTAACAGGGCGTGTCATTGGCCCACCTGAGTTGAAGCTGGGGGATTTTGGTGGCAAGGTGACTAAAGTAAAAGTTGACAATGAGAAATGTCACTGGAATCTAGTTGGCAGGTCATTAGTGGAAGGAAAATCAATAGCTCGCTGGGCTGTGCTTGACTTTAGCTGTTATGATCAAGACTGTTATGATCGGGACAAACTGGACCCTTATCAATTCATCCCAAAGCTCATCACTCGGTGCAACAAATTGGGAATGAGAATGGAAGAGCCTCGCTTGTATGAAACCTCTTCCATGAGACCATTTTCTAGCGTCAACTTGCTTCGGGAACTGCTTGAAACTGTTAATGGGAAGGTACTTCAAGAAGGCAAGGGCCACTTACAACTACTTGTTTGTGTAATGTCTAGAAAAGACCCTGGTTACAAGTATCTGAAGTGGATCTGTGAGACTCAAATTGGTATTGTGACGCAGTGCTGCCTGTCAAAGATGGCCACCAGGCCCAGTGACCAGTTTCTTGCAAATCTTGCACTGAAGATCAATGCGAAGCTTGGAGGCAGTAATGTAGAGCTGATTGACCGGCTCCCGCTCTTTGAGGGTGCTGGCCCTGTTATGTTTGTGGGGGCTGACGTTAATCATCCTGCGGCTCGGAACACAACAAGTCCATCAATAGCAGCTGTGGTTGCCACTATAAACTGGCCTGCTGTGAATCGTTATGCTGCACGAGTCCGACCCCAGTACCATCGTACTGAGAGCATATCGAATTTTGGAGACATGGTTTTGGAGCTTGTTGAATCGTATTTTAGAATAAATAAAGTGAAGCCGGAAAAAATTGTTGTTTTCCGAGATGGTGTAAGTGAGGGGCAATTTGATATGGTTCTCAATGAAGAGTTACTAGATCTGAAGAGGGCTTTGGGAACTATAAACTACTTTCCAACCATCACTCTGATTGTTGCTCAAAAGCGGCATCATACTCGGCTGTTTCAGGAGAATGGACGTTCCAATGTATCTCCAGGAACTGTTGTGGACACAAGGATTGTGCACCCATTTGAGTTTGACTTCTATCTCTGCAGTCACTATGGAAGCCTTGGGACAAGCAAGCCGACACACTACTATGTTCTTTGGGATGAGCACAGTTTTACTTCCGACCAGTTGCAGAAGCTCATATATGACTTGTGCTTTACCTTTGCAAGGTGCACGAAACCTGTCTCTTTGGTTCCGCCAGTGTACTATGCTGACCTTGTGGCCTACAGAGGGAGATTGTACCATGAGACTATGACCGCGGGACTGTCTCCAGGTTCCGTAACATCCTCCTCCTCCTCAGCATCATCATCATCGGCACCTTCAACACTGTCAGTGGGTTCTCTGGATGACAGGTTTTATAGATTGCATGTTGACCTGGAAAACATTATGTTTTTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0016032 GO:0019048 GO:0035197 GO:0035821 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0061980 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

1060

Amino Acids

118.6

Weight (kDa)

9.36

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	215 - 351	2.3e-23	N-terminal domain of argonaute
ArgoL1	PF08699	361 - 411	1.1e-11	Argonaute linker 1 domain
PAZ	PF02170	429 - 538	1.7e-21	PAZ domain
ArgoL2	PF16488	556 - 601	3.2e-07	Argonaute linker 2 domain
Piwi	PF02171	717 - 1006	9.2e-93	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31280 AT1G31290 AT1G31290 AT1G31290
fragaria_vesca	FvH4_3g11980
malus_domestica	MD05G1256100.v1.1 MD10G1236300.v1.1 MD10G1236400.v1.1
prunus_persica	Prupe.4G108000_v2.0.a1 Prupe.4G108100_v2.0.a1
pyrus_communis	pycom05g23500 pycom05g23510 pycom05g23520 pycom10g19770 pycom10g19780
rosa_chinensis	RchiOBHm_Chr5g0019581
rosa_laevigata	RLG00000032457
rosa_roxburghii	Rroxscaffold_1G00058500
rosa_rugosa	Rorug05G0052100 Rorug05G0052200
rosa_samantha	Rh5AG142700 Rh5BG141200 Rh5CG153300 Rh5DG141900
rosa_wichuraiana	Rw5G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1214
Acc36I	ACCTGC	1 cut(s)	1866
AccB1I	GGYRCC	4 cut(s)	408, 414, 420, 3097
AccBSI	CCGCTC	1 cut(s)	2347
AccI	GTMKAC	1 cut(s)	513
AccII	CGCG	2 cut(s)	218, 3041
AclWI	GGATC	2 cut(s)	329, 2207
AcoI	YGGCCR	5 cut(s)	3, 219, 1087, 1438, 2250
AcsI	RAATTY	6 cut(s)	546, 818, 1109, 1273, 1565, 2521
AcuI	CTGAAG	3 cut(s)	2213, 2312, 2681
AdeI	CACNNNGTG	1 cut(s)	2001
AfiI	CCNNNNNNNGG	5 cut(s)	620, 1135, 1715, 2949, 3012
AflII	CTTAAG	1 cut(s)	994
AhdI	GACNNNNNGTC	1 cut(s)	1353
AjiI	CACGTC	1 cut(s)	102
AjnI	CCWGG	9 cut(s)	225, 1185, 1440, 1657, 2176, 2255, 2770, 3052, 3156
AjuI	GAANNNNNNNTTGG	4 cut(s)	1631, 1663, 2654, 2686
Alw21I	GWGCWC	4 cut(s)	969, 2802, 2892, 2957
Alw26I	GTCTC	9 cut(s)	601, 679, 1476, 2053, 2201, 2523, 2971, 3023, 3054
Alw44I	GTGCAC	2 cut(s)	2798, 2953
AlwI	GGATC	2 cut(s)	329, 2207
AlwNI	CAGNNNCTG	1 cut(s)	2777
ApaLI	GTGCAC	2 cut(s)	2798, 2953
ApoI	RAATTY	6 cut(s)	546, 818, 1109, 1273, 1565, 2521
ArsI	GACNNNNNNTTYG	2 cut(s)	1400, 1432
AspLEI	GCGC	1 cut(s)	1236
AspS9I	GGNCC	7 cut(s)	1190, 1706, 1787, 1966, 2134, 2259, 2363
AsuHPI	GGTGA	2 cut(s)	860, 1837
AvaII	GGWCC	3 cut(s)	1190, 1706, 1966
AxyI	CCTNAGG	2 cut(s)	909, 1599
BaeGI	GKGCMC	2 cut(s)	2802, 2957
BaeI	ACNNNNGTAYC	2 cut(s)	2480, 2513
BalI	TGGCCA	2 cut(s)	1440, 2252
BanI	GGYRCC	4 cut(s)	408, 414, 420, 3097
BanII	GRGCYC	1 cut(s)	969
BauI	CACGAG	2 cut(s)	1020, 2481
BbsI	GAAGAC	3 cut(s)	248, 332, 419
Bbv12I	GWGCWC	4 cut(s)	969, 2802, 2892, 2957
BbvCI	CCTCAGC	1 cut(s)	3079
BccI	CCATC	9 cut(s)	577, 839, 1430, 1697, 2242, 2431, 2508, 2600, 2705
BceAI	ACGGC	2 cut(s)	27, 126
BcgI	CGANNNNNNTGC	2 cut(s)	2714, 2748
BciT130I	CCWGG	9 cut(s)	227, 1187, 1442, 1659, 2178, 2257, 2772, 3054, 3158
BclI	TGATCA	3 cut(s)	237, 616, 1936
BcoDI	GTCTC	9 cut(s)	601, 679, 1476, 2053, 2201, 2523, 2971, 3023, 3054
BfaI	CTAG	5 cut(s)	1452, 1868, 2070, 2166, 2654
BfmI	CTRYAG	2 cut(s)	2827, 3007
BfrI	CTTAAG	1 cut(s)	994
BfuAI	ACCTGC	1 cut(s)	1866
BglI	GCCNNNNNGGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	2656
BmcAI	AGTACT	2 cut(s)	694, 992
Bme1390I	CCNGG	9 cut(s)	227, 1187, 1442, 1659, 2178, 2257, 2772, 3054, 3158
Bme18I	GGWCC	3 cut(s)	1190, 1706, 1966
BmeRI	GACNNNNNGTC	1 cut(s)	1353
BmgBI	CACGTC	1 cut(s)	102
BmgT120I	GGNCC	7 cut(s)	1190, 1706, 1787, 1966, 2134, 2259, 2363
BmrFI	CCNGG	9 cut(s)	227, 1187, 1442, 1659, 2178, 2257, 2772, 3054, 3158
BmrI	ACTGGG	2 cut(s)	2256, 2488
BmsI	GCATC	3 cut(s)	1609, 2734, 3092
BmuI	ACTGGG	2 cut(s)	2256, 2488
BpiI	GAAGAC	3 cut(s)	248, 332, 419
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
BpmI	CTGGAG	4 cut(s)	549, 906, 2754, 3036
Bpu10I	CCTNAGC	1 cut(s)	3079
BpuEI	CTTGAG	1 cut(s)	953
BsaI	GGTCTC	1 cut(s)	2053
BsaXI	ACNNNNNCTCC	8 cut(s)	45, 68, 75, 98, 352, 382, 2520, 2550
Bsc4I	CCNNNNNNNGG	5 cut(s)	620, 1135, 1715, 2949, 3012
Bse118I	RCCGGY	3 cut(s)	411, 417, 2337
Bse21I	CCTNAGG	2 cut(s)	909, 1599
BseBI	CCWGG	9 cut(s)	227, 1187, 1442, 1659, 2178, 2257, 2772, 3054, 3158
BseGI	GGATG	5 cut(s)	1980, 2395, 2890, 3065, 3133
BseLI	CCNNNNNNNGG	5 cut(s)	620, 1135, 1715, 2949, 3012
BseMII	CTCAG	7 cut(s)	283, 701, 900, 1227, 1785, 2499, 3093
BseRI	GAGGAG	6 cut(s)	56, 89, 134, 3061, 3064, 3067
BseSI	GKGCMC	2 cut(s)	2802, 2957
BseYI	CCCAGC	2 cut(s)	1804, 1908
BsgI	GTGCAG	2 cut(s)	606, 2463
Bsh1236I	CGCG	2 cut(s)	218, 3041
Bsh1285I	CGRYCG	2 cut(s)	117, 1697
BshNI	GGYRCC	4 cut(s)	408, 414, 420, 3097
BsiEI	CGRYCG	2 cut(s)	117, 1697
BsiHKAI	GWGCWC	4 cut(s)	969, 2802, 2892, 2957
BsiSI	CCGG	5 cut(s)	406, 412, 418, 2338, 2582
BslFI	GGGAC	4 cut(s)	1421, 1970, 2863, 3057
BslI	CCNNNNNNNGG	5 cut(s)	620, 1135, 1715, 2949, 3012
BsmAI	GTCTC	9 cut(s)	601, 679, 1476, 2053, 2201, 2523, 2971, 3023, 3054
BsmBI	CGTCTC	1 cut(s)	601
BsmFI	GGGAC	4 cut(s)	1421, 1970, 2863, 3057
BsmI	GAATGC	2 cut(s)	736, 1405
Bso31I	GGTCTC	1 cut(s)	2053
Bsp1286I	GDGCHC	4 cut(s)	969, 2802, 2892, 2957
BspCNI	CTCAG	7 cut(s)	282, 700, 901, 1226, 1786, 2500, 3092
BspFNI	CGCG	2 cut(s)	218, 3041
BspMAI	CTGCAG	1 cut(s)	2831
BspMI	ACCTGC	1 cut(s)	1866
BspPI	GGATC	2 cut(s)	329, 2207
BspQI	GCTCTTC	1 cut(s)	2022
BspT107I	GGYRCC	4 cut(s)	408, 414, 420, 3097
BspTI	CTTAAG	1 cut(s)	994
BspTNI	GGTCTC	1 cut(s)	2053
BsrBI	CCGCTC	1 cut(s)	2347
BsrFI	RCCGGY	3 cut(s)	411, 417, 2337
BssAI	RCCGGY	3 cut(s)	411, 417, 2337
BssSI	CACGAG	2 cut(s)	1020, 2481
BssT1I	CCWWGG	3 cut(s)	331, 1129, 2845
Bst2BI	CACGAG	2 cut(s)	1020, 2481
Bst2UI	CCWGG	9 cut(s)	227, 1187, 1442, 1659, 2178, 2257, 2772, 3054, 3158
Bst6I	CTCTTC	6 cut(s)	126, 312, 2022, 2056, 2640, 2657
BstAFI	CTTAAG	1 cut(s)	994
BstAPI	GCANNNNNTGC	1 cut(s)	2285
BstC8I	GCNNGC	7 cut(s)	223, 388, 1238, 1906, 2362, 2460, 2858
BstDSI	CCRYGG	1 cut(s)	3039
BstENI	CCTNNNNNAGG	2 cut(s)	1133, 2947
BstF5I	GGATG	5 cut(s)	1980, 2395, 2890, 3065, 3133
BstFNI	CGCG	2 cut(s)	218, 3041
BstHHI	GCGC	1 cut(s)	1236
BstMAI	GTCTC	9 cut(s)	601, 679, 1476, 2053, 2201, 2523, 2971, 3023, 3054
BstMCI	CGRYCG	2 cut(s)	117, 1697
BstNI	CCWGG	9 cut(s)	227, 1187, 1442, 1659, 2178, 2257, 2772, 3054, 3158
BstNSI	RCATGY	2 cut(s)	1240, 3152
BstSCI	CCNGG	9 cut(s)	225, 1185, 1440, 1657, 2176, 2255, 2770, 3052, 3156
BstSFI	CTRYAG	2 cut(s)	2827, 3007
BstSLI	GKGCMC	2 cut(s)	2802, 2957
BstUI	CGCG	2 cut(s)	218, 3041
BstV2I	GAAGAC	3 cut(s)	248, 332, 419
BstX2I	RGATCY	2 cut(s)	2199, 2656
BstXI	CCANNNNNNTGG	1 cut(s)	1736
BstYI	RGATCY	2 cut(s)	2199, 2656
Bsu36I	CCTNAGG	2 cut(s)	909, 1599
BtgI	CCRYGG	1 cut(s)	3039
BtrI	CACGTC	1 cut(s)	102
BtsCI	GGATG	5 cut(s)	1980, 2395, 2890, 3065, 3133
BtsI	GCAGTG	3 cut(s)	205, 373, 2237
BveI	ACCTGC	1 cut(s)	1866
Cac8I	GCNNGC	7 cut(s)	223, 388, 1238, 1906, 2362, 2460, 2858
CaiI	CAGNNNCTG	1 cut(s)	2777
CfoI	GCGC	1 cut(s)	1236
Cfr10I	RCCGGY	3 cut(s)	411, 417, 2337
Cfr13I	GGNCC	7 cut(s)	1190, 1706, 1787, 1966, 2134, 2259, 2363
Cfr42I	CCGCGG	1 cut(s)	3042
CseI	GACGC	4 cut(s)	484, 524, 2062, 2236
CspCI	CAANNNNNGTGG	2 cut(s)	1779, 1814
CviAII	CATG	8 cut(s)	1237, 1259, 1687, 1753, 2056, 2533, 3026, 3149
DraI	TTTAAA	1 cut(s)	1284
DraIII	CACNNNGTG	1 cut(s)	2001
DrdI	GACNNNNNNGTC	1 cut(s)	1214
DriI	GACNNNNNGTC	1 cut(s)	1353
DseDI	GACNNNNNNGTC	1 cut(s)	1214
EaeI	YGGCCR	5 cut(s)	3, 219, 1087, 1438, 2250
Eam1104I	CTCTTC	6 cut(s)	126, 312, 2022, 2056, 2640, 2657
Eam1105I	GACNNNNNGTC	1 cut(s)	1353
EarI	CTCTTC	6 cut(s)	126, 312, 2022, 2056, 2640, 2657
EciI	GGCGGA	1 cut(s)	2967
Ecl136II	GAGCTC	1 cut(s)	967
Eco130I	CCWWGG	3 cut(s)	331, 1129, 2845
Eco24I	GRGCYC	1 cut(s)	969
Eco31I	GGTCTC	1 cut(s)	2053
Eco32I	GATATC	1 cut(s)	1498
Eco47I	GGWCC	3 cut(s)	1190, 1706, 1966
Eco53kI	GAGCTC	1 cut(s)	967
Eco57I	CTGAAG	3 cut(s)	2213, 2312, 2681
Eco81I	CCTNAGG	2 cut(s)	909, 1599
EcoICRI	GAGCTC	1 cut(s)	967
EcoNI	CCTNNNNNAGG	2 cut(s)	1133, 2947
EcoO109I	RGGNCCY	1 cut(s)	1190
EcoRII	CCWGG	9 cut(s)	225, 1185, 1440, 1657, 2176, 2255, 2770, 3052, 3156
EcoRV	GATATC	1 cut(s)	1498
EcoT14I	CCWWGG	3 cut(s)	331, 1129, 2845
EcoT38I	GRGCYC	1 cut(s)	969
ErhI	CCWWGG	3 cut(s)	331, 1129, 2845
Esp3I	CGTCTC	1 cut(s)	601
FaeI	CATG	8 cut(s)	1240, 1262, 1690, 1756, 2059, 2536, 3029, 3152
FalI	AAGNNNNNCTT	8 cut(s)	845, 877, 977, 1009, 1165, 1197, 2123, 2155
FaqI	GGGAC	4 cut(s)	1421, 1970, 2863, 3057
FatI	CATG	8 cut(s)	1236, 1258, 1686, 1752, 2055, 2532, 3025, 3148
FauI	CCCGC	2 cut(s)	2352, 3034
FauNDI	CATATG	1 cut(s)	841
FbaI	TGATCA	3 cut(s)	237, 616, 1936
FblI	GTMKAC	1 cut(s)	513
FokI	GGATG	5 cut(s)	1967, 2382, 2897, 3052, 3140
FriOI	GRGCYC	1 cut(s)	969
FspBI	CTAG	5 cut(s)	1452, 1868, 2070, 2166, 2654
GlaI	GCGC	1 cut(s)	1235
GsaI	CCCAGC	2 cut(s)	1808, 1912
GsuI	CTGGAG	4 cut(s)	549, 906, 2754, 3036
HapII	CCGG	5 cut(s)	406, 412, 418, 2338, 2582
HgaI	GACGC	4 cut(s)	484, 524, 2062, 2236
HhaI	GCGC	1 cut(s)	1236
Hin1II	CATG	8 cut(s)	1240, 1262, 1690, 1756, 2059, 2536, 3029, 3152
Hin6I	GCGC	1 cut(s)	1234
HinP1I	GCGC	1 cut(s)	1234
HincII	GTYRAC	6 cut(s)	175, 349, 1750, 1843, 2077, 3154
HindII	GTYRAC	6 cut(s)	175, 349, 1750, 1843, 2077, 3154
HindIII	AAGCTT	2 cut(s)	971, 2306
HpaII	CCGG	5 cut(s)	406, 412, 418, 2338, 2582
HphI	GGTGA	2 cut(s)	860, 1837
HpyCH4IV	ACGT	3 cut(s)	101, 2388, 2755
HpySE526I	ACGT	3 cut(s)	101, 2388, 2755
Hsp92II	CATG	8 cut(s)	1240, 1262, 1690, 1756, 2059, 2536, 3029, 3152
HspAI	GCGC	1 cut(s)	1234
Ksp22I	TGATCA	3 cut(s)	237, 616, 1936
KspI	CCGCGG	1 cut(s)	3042
LguI	GCTCTTC	1 cut(s)	2022
LmnI	GCTCC	4 cut(s)	360, 1603, 2346, 2542
LweI	GCATC	3 cut(s)	1609, 2734, 3092
MaeI	CTAG	5 cut(s)	1452, 1868, 2070, 2166, 2654
MaeII	ACGT	3 cut(s)	101, 2388, 2755
MbiI	CCGCTC	1 cut(s)	2347
MflI	RGATCY	2 cut(s)	2199, 2656
MhlI	GDGCHC	4 cut(s)	969, 2802, 2892, 2957
MlsI	TGGCCA	2 cut(s)	1440, 2252
MluNI	TGGCCA	2 cut(s)	1440, 2252
MlyI	GAGTC	5 cut(s)	381, 1060, 1342, 2203, 2493
MmeI	TCCRAC	7 cut(s)	478, 1088, 1382, 1542, 2512, 2717, 2928
Mox20I	TGGCCA	2 cut(s)	1440, 2252
MscI	TGGCCA	2 cut(s)	1440, 2252
MslI	CAYNNNNRTG	4 cut(s)	669, 708, 1757, 2871
Msp20I	TGGCCA	2 cut(s)	1440, 2252
MspA1I	CMGCKG	4 cut(s)	38, 1006, 2435, 3041
MspCI	CTTAAG	1 cut(s)	994
MspI	CCGG	5 cut(s)	406, 412, 418, 2338, 2582
MspR9I	CCNGG	9 cut(s)	227, 1187, 1442, 1659, 2178, 2257, 2772, 3054, 3158
Mva1269I	GAATGC	2 cut(s)	736, 1405
MvaI	CCWGG	9 cut(s)	227, 1187, 1442, 1659, 2178, 2257, 2772, 3054, 3158
MvnI	CGCG	2 cut(s)	218, 3041
NdeI	CATATG	1 cut(s)	841
NlaIII	CATG	8 cut(s)	1240, 1262, 1690, 1756, 2059, 2536, 3029, 3152
NmeAIII	GCCGAG	2 cut(s)	1048, 2713
NmuCI	GTSAC	8 cut(s)	871, 943, 1345, 1825, 1856, 2224, 2264, 2831
NspI	RCATGY	2 cut(s)	1240, 3152
PaeI	GCATGC	1 cut(s)	1240
PasI	CCCWGGG	1 cut(s)	1186
PciSI	GCTCTTC	1 cut(s)	2022
PctI	GAATGC	2 cut(s)	736, 1405
PfeI	GAWTC	7 cut(s)	213, 378, 1060, 1078, 1864, 2467, 2552
PfoI	TCCNGGA	1 cut(s)	2770
PleI	GAGTC	5 cut(s)	380, 1060, 1342, 2203, 2492
PpsI	GAGTC	5 cut(s)	380, 1060, 1342, 2203, 2492
PpuMI	RGGWCCY	1 cut(s)	1190
Psp124BI	GAGCTC	1 cut(s)	969
Psp5II	RGGWCCY	1 cut(s)	1190
Psp6I	CCWGG	9 cut(s)	225, 1185, 1440, 1657, 2176, 2255, 2770, 3052, 3156
PspFI	CCCAGC	2 cut(s)	1804, 1908
PspGI	CCWGG	9 cut(s)	225, 1185, 1440, 1657, 2176, 2255, 2770, 3052, 3156
PspPI	GGNCC	7 cut(s)	1190, 1706, 1787, 1966, 2134, 2259, 2363
PspPPI	RGGWCCY	1 cut(s)	1190
PstI	CTGCAG	1 cut(s)	2831
PstNI	CAGNNNCTG	1 cut(s)	2777
PsuI	RGATCY	2 cut(s)	2199, 2656
PvuII	CAGCTG	2 cut(s)	1006, 2435
RseI	CAYNNNNRTG	4 cut(s)	669, 708, 1757, 2871
SacI	GAGCTC	1 cut(s)	969
SacII	CCGCGG	1 cut(s)	3042
SapI	GCTCTTC	1 cut(s)	2022
Sau96I	GGNCC	7 cut(s)	1190, 1706, 1787, 1966, 2134, 2259, 2363
ScaI	AGTACT	2 cut(s)	694, 992
SchI	GAGTC	5 cut(s)	381, 1060, 1342, 2203, 2493
ScrFI	CCNGG	9 cut(s)	227, 1187, 1442, 1659, 2178, 2257, 2772, 3054, 3158
SduI	GDGCHC	4 cut(s)	969, 2802, 2892, 2957
SfaNI	GCATC	3 cut(s)	1609, 2734, 3092
SfcI	CTRYAG	2 cut(s)	2827, 3007
Sfr303I	CCGCGG	1 cut(s)	3042
SgrBI	CCGCGG	1 cut(s)	3042
SinI	GGWCC	3 cut(s)	1190, 1706, 1966
SmiMI	CAYNNNNRTG	4 cut(s)	669, 708, 1757, 2871
SmlI	CTYRAG	2 cut(s)	968, 994
SmoI	CTYRAG	2 cut(s)	968, 994
SphI	GCATGC	1 cut(s)	1240
SspMI	CTAG	5 cut(s)	1452, 1868, 2070, 2166, 2654
SstI	GAGCTC	1 cut(s)	969
StyD4I	CCNGG	9 cut(s)	225, 1185, 1440, 1657, 2176, 2255, 2770, 3052, 3156
StyI	CCWWGG	3 cut(s)	331, 1129, 2845
TaiI	ACGT	3 cut(s)	104, 2391, 2758
TaqI	TCGA	3 cut(s)	117, 381, 2519
TatI	WGTACW	4 cut(s)	692, 990, 1503, 2985
TfiI	GAWTC	7 cut(s)	213, 378, 1060, 1078, 1864, 2467, 2552
TseFI	GTSAC	8 cut(s)	871, 943, 1345, 1825, 1856, 2224, 2264, 2831
Tsp45I	GTSAC	8 cut(s)	871, 943, 1345, 1825, 1856, 2224, 2264, 2831
TspGWI	ACGGA	2 cut(s)	564, 3049
Vha464I	CTTAAG	1 cut(s)	994
VneI	GTGCAC	2 cut(s)	2798, 2953
VpaK11BI	GGWCC	3 cut(s)	1190, 1706, 1966
XagI	CCTNNNNNAGG	2 cut(s)	1133, 2947
XapI	RAATTY	6 cut(s)	546, 818, 1109, 1273, 1565, 2521
XbaI	TCTAGA	1 cut(s)	2165
XceI	RCATGY	2 cut(s)	1240, 3152
XmiI	GTMKAC	1 cut(s)	513
XspI	CTAG	5 cut(s)	1452, 1868, 2070, 2166, 2654
ZrmI	AGTACT	2 cut(s)	694, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.