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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G31280 AT1G31290 AT1G31290 AT1G31290 |
| fragaria_vesca | FvH4_3g11980 |
| malus_domestica | MD05G1256100.v1.1 MD10G1236300.v1.1 MD10G1236400.v1.1 |
| prunus_persica | Prupe.4G108000_v2.0.a1 Prupe.4G108100_v2.0.a1 |
| pyrus_communis | pycom05g23500 pycom05g23510 pycom05g23520 pycom10g19770 pycom10g19780 |
| rosa_chinensis | RchiOBHm_Chr5g0019581 |
| rosa_laevigata | RLG00000032457 |
| rosa_roxburghii | Rroxscaffold_1G00058500 |
| rosa_rugosa | Rorug05G0052100 Rorug05G0052200 |
| rosa_samantha | Rh5AG142700 Rh5BG141200 Rh5CG153300 Rh5DG141900 |
| rosa_wichuraiana | Rw5G012630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 158, 882, 1784, 2750 |
| Acc16I | TGCGCA | 1 cut(s) | 1531 |
| Acc36I | ACCTGC | 1 cut(s) | 770 |
| Acc65I | GGTACC | 2 cut(s) | 242, 306 |
| AccB1I | GGYRCC | 2 cut(s) | 242, 306 |
| AccI | GTMKAC | 2 cut(s) | 1226, 2055 |
| AciI | CCGC | 4 cut(s) | 175, 296, 990, 1145 |
| AclWI | GGATC | 3 cut(s) | 379, 392, 2864 |
| AcvI | CACGTG | 2 cut(s) | 876, 908 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2499 |
| AflIII | ACRYGT | 7 cut(s) | 618, 873, 875, 907, 1460, 1700, 2372 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1151, 1183, 1838, 1870 |
| AluBI | AGCT | 1 cut(s) | 34 |
| AluI | AGCT | 1 cut(s) | 34 |
| Alw21I | GWGCWC | 1 cut(s) | 1350 |
| Alw26I | GTCTC | 3 cut(s) | 288, 2697, 2857 |
| Alw44I | GTGCAC | 1 cut(s) | 1346 |
| AlwI | GGATC | 3 cut(s) | 379, 392, 2864 |
| AoxI | GGCC | 1 cut(s) | 1150 |
| ApaLI | GTGCAC | 1 cut(s) | 1346 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 2856 |
| AseI | ATTAAT | 2 cut(s) | 1425, 2601 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1477 |
| Asp718I | GGTACC | 2 cut(s) | 242, 306 |
| AspLEI | GCGC | 1 cut(s) | 1532 |
| AspS9I | GGNCC | 3 cut(s) | 298, 1150, 2807 |
| AsuHPI | GGTGA | 2 cut(s) | 1870, 2053 |
| AsuII | TTCGAA | 2 cut(s) | 369, 2231 |
| AvaII | GGWCC | 2 cut(s) | 298, 2807 |
| AxyI | CCTNAGG | 1 cut(s) | 502 |
| BaeGI | GKGCMC | 2 cut(s) | 1350, 1381 |
| BamHI | GGATCC | 1 cut(s) | 384 |
| BanI | GGYRCC | 2 cut(s) | 242, 306 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 226, 258, 1239, 1271 |
| BbrPI | CACGTG | 2 cut(s) | 876, 908 |
| BbsI | GAAGAC | 2 cut(s) | 494, 823 |
| Bbv12I | GWGCWC | 1 cut(s) | 1350 |
| BccI | CCATC | 5 cut(s) | 103, 806, 1124, 1411, 2006 |
| BceAI | ACGGC | 1 cut(s) | 990 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 266, 300 |
| BclI | TGATCA | 3 cut(s) | 352, 2043, 2722 |
| BcoDI | GTCTC | 3 cut(s) | 288, 2697, 2857 |
| BfaI | CTAG | 1 cut(s) | 1470 |
| BfmI | CTRYAG | 1 cut(s) | 1509 |
| BfuAI | ACCTGC | 1 cut(s) | 770 |
| BisI | GCNGC | 1 cut(s) | 176 |
| BlsI | GCNGC | 1 cut(s) | 177 |
| Bme18I | GGWCC | 2 cut(s) | 298, 2807 |
| BmgT120I | GGNCC | 3 cut(s) | 298, 1150, 2807 |
| BmiI | GGNNCC | 5 cut(s) | 244, 308, 386, 1099, 1929 |
| BmrI | ACTGGG | 1 cut(s) | 2137 |
| BmsI | GCATC | 3 cut(s) | 482, 992, 1205 |
| BmuI | ACTGGG | 1 cut(s) | 2137 |
| BpiI | GAAGAC | 2 cut(s) | 494, 823 |
| BpmI | CTGGAG | 2 cut(s) | 1116, 1584 |
| Bpu14I | TTCGAA | 2 cut(s) | 369, 2231 |
| BpuEI | CTTGAG | 1 cut(s) | 2725 |
| Bsa29I | ATCGAT | 1 cut(s) | 1213 |
| BsaAI | YACGTR | 8 cut(s) | 798, 876, 908, 1191, 1259, 1703, 2167, 2375 |
| BsaI | GGTCTC | 1 cut(s) | 288 |
| BsaJI | CCNNGG | 2 cut(s) | 246, 1623 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 552, 582, 1089, 1119, 1711, 1741, 2677, 2707 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2499 |
| Bse1I | ACTGG | 2 cut(s) | 1567, 2132 |
| Bse21I | CCTNAGG | 1 cut(s) | 502 |
| Bse3DI | GCAATG | 4 cut(s) | 407, 586, 702, 1525 |
| BseCI | ATCGAT | 1 cut(s) | 1213 |
| BseDI | CCNNGG | 2 cut(s) | 246, 1623 |
| BseGI | GGATG | 4 cut(s) | 89, 1007, 1145, 2017 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2499 |
| BseMI | GCAATG | 4 cut(s) | 407, 586, 702, 1525 |
| BseMII | CTCAG | 1 cut(s) | 516 |
| BseNI | ACTGG | 2 cut(s) | 1567, 2132 |
| BseRI | GAGGAG | 2 cut(s) | 573, 1581 |
| BseSI | GKGCMC | 2 cut(s) | 1350, 1381 |
| BseYI | CCCAGC | 1 cut(s) | 1147 |
| BshFI | GGCC | 1 cut(s) | 1152 |
| BshNI | GGYRCC | 2 cut(s) | 242, 306 |
| BshVI | ATCGAT | 1 cut(s) | 1213 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1350 |
| BsiWI | CGTACG | 1 cut(s) | 1255 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2499 |
| BsmAI | GTCTC | 3 cut(s) | 288, 2697, 2857 |
| BsnI | GGCC | 1 cut(s) | 1152 |
| Bso31I | GGTCTC | 1 cut(s) | 288 |
| Bsp119I | TTCGAA | 2 cut(s) | 369, 2231 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1350, 1381 |
| Bsp1407I | TGTACA | 5 cut(s) | 118, 615, 1306, 2415, 2520 |
| BspACI | CCGC | 4 cut(s) | 175, 296, 990, 1145 |
| BspANI | GGCC | 1 cut(s) | 1152 |
| BspCNI | CTCAG | 1 cut(s) | 515 |
| BspDI | ATCGAT | 1 cut(s) | 1213 |
| BspHI | TCATGA | 2 cut(s) | 349, 2173 |
| BspLI | GGNNCC | 5 cut(s) | 244, 308, 386, 1099, 1929 |
| BspMI | ACCTGC | 1 cut(s) | 770 |
| BspPI | GGATC | 3 cut(s) | 379, 392, 2864 |
| BspT104I | TTCGAA | 2 cut(s) | 369, 2231 |
| BspT107I | GGYRCC | 2 cut(s) | 242, 306 |
| BspTNI | GGTCTC | 1 cut(s) | 288 |
| BsrDI | GCAATG | 4 cut(s) | 407, 586, 702, 1525 |
| BsrGI | TGTACA | 5 cut(s) | 118, 615, 1306, 2415, 2520 |
| BsrI | ACTGG | 2 cut(s) | 1567, 2132 |
| BssECI | CCNNGG | 2 cut(s) | 246, 1623 |
| BssNAI | GTATAC | 2 cut(s) | 1227, 2056 |
| BssT1I | CCWWGG | 2 cut(s) | 246, 1623 |
| Bst1107I | GTATAC | 2 cut(s) | 1227, 2056 |
| Bst4CI | ACNGT | 6 cut(s) | 403, 453, 615, 1290, 1300, 1513 |
| BstAUI | TGTACA | 5 cut(s) | 118, 615, 1306, 2415, 2520 |
| BstBAI | YACGTR | 8 cut(s) | 798, 876, 908, 1191, 1259, 1703, 2167, 2375 |
| BstBI | TTCGAA | 2 cut(s) | 369, 2231 |
| BstC8I | GCNNGC | 5 cut(s) | 414, 992, 1072, 1102, 1893 |
| BstDEI | CTNAG | 5 cut(s) | 502, 1805, 2225, 2481, 2498 |
| BstEII | GGTNACC | 1 cut(s) | 420 |
| BstF5I | GGATG | 4 cut(s) | 89, 1007, 1145, 2017 |
| BstHHI | GCGC | 1 cut(s) | 1532 |
| BstMAI | GTCTC | 3 cut(s) | 288, 2697, 2857 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 662, 713, 1332 |
| BstNSI | RCATGY | 4 cut(s) | 622, 1044, 1074, 1464 |
| BstPI | GGTNACC | 1 cut(s) | 420 |
| BstSFI | CTRYAG | 1 cut(s) | 1509 |
| BstSLI | GKGCMC | 2 cut(s) | 1350, 1381 |
| BstSNI | TACGTA | 2 cut(s) | 1191, 1259 |
| BstV2I | GAAGAC | 2 cut(s) | 494, 823 |
| BstX2I | RGATCY | 1 cut(s) | 384 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1500 |
| BstYI | RGATCY | 1 cut(s) | 384 |
| BstZ17I | GTATAC | 2 cut(s) | 1227, 2056 |
| Bsu15I | ATCGAT | 1 cut(s) | 1213 |
| Bsu36I | CCTNAGG | 1 cut(s) | 502 |
| BsuRI | GGCC | 1 cut(s) | 1152 |
| BsuTUI | ATCGAT | 1 cut(s) | 1213 |
| BtsCI | GGATG | 4 cut(s) | 89, 1007, 1145, 2017 |
| BtsIMutI | CAGTG | 2 cut(s) | 1560, 2125 |
| BveI | ACCTGC | 1 cut(s) | 770 |
| Cac8I | GCNNGC | 5 cut(s) | 414, 992, 1072, 1102, 1893 |
| CciI | TCATGA | 2 cut(s) | 349, 2173 |
| CfoI | GCGC | 1 cut(s) | 1532 |
| Cfr13I | GGNCC | 3 cut(s) | 298, 1150, 2807 |
| ClaI | ATCGAT | 1 cut(s) | 1213 |
| CviJI | RGCY | 9 cut(s) | 34, 635, 716, 994, 1100, 1152, 1843, 2132, 2154 |
| CviKI_1 | RGCY | 9 cut(s) | 34, 635, 716, 994, 1100, 1152, 1843, 2132, 2154 |
| DdeI | CTNAG | 5 cut(s) | 502, 1805, 2225, 2481, 2498 |
| DraI | TTTAAA | 3 cut(s) | 1836, 1962, 2145 |
| Eco105I | TACGTA | 2 cut(s) | 1191, 1259 |
| Eco130I | CCWWGG | 2 cut(s) | 246, 1623 |
| Eco31I | GGTCTC | 1 cut(s) | 288 |
| Eco32I | GATATC | 1 cut(s) | 379 |
| Eco47I | GGWCC | 2 cut(s) | 298, 2807 |
| Eco72I | CACGTG | 2 cut(s) | 876, 908 |
| Eco81I | CCTNAGG | 1 cut(s) | 502 |
| Eco91I | GGTNACC | 1 cut(s) | 420 |
| EcoO65I | GGTNACC | 1 cut(s) | 420 |
| EcoRV | GATATC | 1 cut(s) | 379 |
| EcoT14I | CCWWGG | 2 cut(s) | 246, 1623 |
| ErhI | CCWWGG | 2 cut(s) | 246, 1623 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 409, 441 |
| FauI | CCCGC | 1 cut(s) | 983 |
| FauNDI | CATATG | 2 cut(s) | 2111, 2635 |
| FbaI | TGATCA | 3 cut(s) | 352, 2043, 2722 |
| FblI | GTMKAC | 2 cut(s) | 1226, 2055 |
| Fnu4HI | GCNGC | 1 cut(s) | 176 |
| FokI | GGATG | 4 cut(s) | 76, 1014, 1152, 2024 |
| Fsp4HI | GCNGC | 1 cut(s) | 176 |
| FspBI | CTAG | 1 cut(s) | 1470 |
| FspI | TGCGCA | 1 cut(s) | 1531 |
| GlaI | GCGC | 1 cut(s) | 1531 |
| GluI | GCNGC | 1 cut(s) | 176 |
| GsaI | CCCAGC | 1 cut(s) | 1151 |
| GsuI | CTGGAG | 2 cut(s) | 1116, 1584 |
| HaeIII | GGCC | 1 cut(s) | 1152 |
| HhaI | GCGC | 1 cut(s) | 1532 |
| Hin6I | GCGC | 1 cut(s) | 1530 |
| HinP1I | GCGC | 1 cut(s) | 1530 |
| HincII | GTYRAC | 1 cut(s) | 541 |
| HindII | GTYRAC | 1 cut(s) | 541 |
| HinfI | GANTC | 5 cut(s) | 1051, 1399, 2170, 2233, 2487 |
| HpaI | GTTAAC | 1 cut(s) | 541 |
| HphI | GGTGA | 2 cut(s) | 1870, 2053 |
| Hpy166II | GTNNAC | 8 cut(s) | 541, 926, 1227, 1348, 1700, 1802, 1992, 2056 |
| Hpy188I | TCNGA | 2 cut(s) | 1671, 2000 |
| Hpy188III | TCNNGA | 6 cut(s) | 338, 350, 382, 2174, 2742, 2860 |
| Hpy8I | GTNNAC | 8 cut(s) | 541, 926, 1227, 1348, 1700, 1802, 1992, 2056 |
| HpyAV | CCTTC | 5 cut(s) | 1076, 1241, 1356, 1910, 2678 |
| HpyCH4III | ACNGT | 6 cut(s) | 403, 453, 615, 1290, 1300, 1513 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 662, 713, 1332 |
| HpyF3I | CTNAG | 5 cut(s) | 502, 1805, 2225, 2481, 2498 |
| HspAI | GCGC | 1 cut(s) | 1530 |
| KpnI | GGTACC | 2 cut(s) | 246, 310 |
| Ksp22I | TGATCA | 3 cut(s) | 352, 2043, 2722 |
| KspAI | GTTAAC | 1 cut(s) | 541 |
| LmnI | GCTCC | 1 cut(s) | 1097 |
| LweI | GCATC | 3 cut(s) | 482, 992, 1205 |
| MaeI | CTAG | 1 cut(s) | 1470 |
| MaeIII | GTNAC | 6 cut(s) | 26, 420, 898, 1463, 1558, 2776 |
| MfeI | CAATTG | 1 cut(s) | 2156 |
| MflI | RGATCY | 1 cut(s) | 384 |
| MhlI | GDGCHC | 2 cut(s) | 1350, 1381 |
| MlyI | GAGTC | 1 cut(s) | 1060 |
| MmeI | TCCRAC | 3 cut(s) | 634, 1663, 2342 |
| MnlI | CCTC | 9 cut(s) | 511, 551, 662, 1346, 1350, 1602, 1737, 2710, 2820 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1477 |
| MslI | CAYNNNNRTG | 3 cut(s) | 548, 1045, 2114 |
| MspA1I | CMGCKG | 2 cut(s) | 990, 1147 |
| MunI | CAATTG | 1 cut(s) | 2156 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 662, 713, 1332 |
| NdeI | CATATG | 2 cut(s) | 2111, 2635 |
| NlaIV | GGNNCC | 5 cut(s) | 244, 308, 386, 1099, 1929 |
| NmuCI | GTSAC | 2 cut(s) | 1558, 2776 |
| NsbI | TGCGCA | 1 cut(s) | 1531 |
| NspI | RCATGY | 4 cut(s) | 622, 1044, 1074, 1464 |
| NspV | TTCGAA | 2 cut(s) | 369, 2231 |
| PaeI | GCATGC | 1 cut(s) | 1074 |
| PagI | TCATGA | 2 cut(s) | 349, 2173 |
| PciI | ACATGT | 2 cut(s) | 618, 1460 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1477 |
| PfeI | GAWTC | 4 cut(s) | 1399, 2170, 2233, 2487 |
| Pfl23II | CGTACG | 1 cut(s) | 1255 |
| PkrI | GCNGC | 1 cut(s) | 177 |
| PleI | GAGTC | 1 cut(s) | 1059 |
| PmaCI | CACGTG | 2 cut(s) | 876, 908 |
| PmlI | CACGTG | 2 cut(s) | 876, 908 |
| PpsI | GAGTC | 1 cut(s) | 1059 |
| Ppu21I | YACGTR | 8 cut(s) | 798, 876, 908, 1191, 1259, 1703, 2167, 2375 |
| PscI | ACATGT | 2 cut(s) | 618, 1460 |
| PshBI | ATTAAT | 2 cut(s) | 1425, 2601 |
| PsiI | TTATAA | 4 cut(s) | 158, 882, 1784, 2750 |
| PspCI | CACGTG | 2 cut(s) | 876, 908 |
| PspEI | GGTNACC | 1 cut(s) | 420 |
| PspFI | CCCAGC | 1 cut(s) | 1147 |
| PspLI | CGTACG | 1 cut(s) | 1255 |
| PspN4I | GGNNCC | 5 cut(s) | 244, 308, 386, 1099, 1929 |
| PspPI | GGNCC | 3 cut(s) | 298, 1150, 2807 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1248, 1280 |
| PsuI | RGATCY | 1 cut(s) | 384 |
| RseI | CAYNNNNRTG | 3 cut(s) | 548, 1045, 2114 |
| SatI | GCNGC | 1 cut(s) | 176 |
| Sau96I | GGNCC | 3 cut(s) | 298, 1150, 2807 |
| SchI | GAGTC | 1 cut(s) | 1060 |
| SduI | GDGCHC | 2 cut(s) | 1350, 1381 |
| SfaNI | GCATC | 3 cut(s) | 482, 992, 1205 |
| SfcI | CTRYAG | 1 cut(s) | 1509 |
| SfuI | TTCGAA | 2 cut(s) | 369, 2231 |
| SinI | GGWCC | 2 cut(s) | 298, 2807 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 548, 1045, 2114 |
| SmlI | CTYRAG | 1 cut(s) | 2740 |
| SmoI | CTYRAG | 1 cut(s) | 2740 |
| SnaBI | TACGTA | 2 cut(s) | 1191, 1259 |
| SphI | GCATGC | 1 cut(s) | 1074 |
| SsiI | CCGC | 4 cut(s) | 175, 296, 990, 1145 |
| SspI | AATATT | 4 cut(s) | 2527, 2564, 2615, 2824 |
| SspMI | CTAG | 1 cut(s) | 1470 |
| StyI | CCWWGG | 2 cut(s) | 246, 1623 |
| TaaI | ACNGT | 6 cut(s) | 403, 453, 615, 1290, 1300, 1513 |
| TaqI | TCGA | 9 cut(s) | 257, 339, 369, 476, 688, 731, 944, 1213, 2231 |
| TaqII | GACCGA | 1 cut(s) | 276 |
| TatI | WGTACW | 7 cut(s) | 118, 615, 923, 1306, 1818, 2415, 2520 |
| TauI | GCSGC | 1 cut(s) | 178 |
| TfiI | GAWTC | 4 cut(s) | 1399, 2170, 2233, 2487 |
| TscAI | CASTG | 2 cut(s) | 1567, 2132 |
| TseFI | GTSAC | 2 cut(s) | 1558, 2776 |
| Tsp45I | GTSAC | 2 cut(s) | 1558, 2776 |
| TspDTI | ATGAA | 8 cut(s) | 26, 78, 446, 751, 1260, 1409, 1514, 2660 |
| TspRI | CASTG | 2 cut(s) | 1567, 2132 |
| VneI | GTGCAC | 1 cut(s) | 1346 |
| VpaK11BI | GGWCC | 2 cut(s) | 298, 2807 |
| VspI | ATTAAT | 2 cut(s) | 1425, 2601 |
| XceI | RCATGY | 4 cut(s) | 622, 1044, 1074, 1464 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 709 |
| XmiI | GTMKAC | 2 cut(s) | 1226, 2055 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1477 |
| XspI | CTAG | 1 cut(s) | 1470 |