pycom05g23500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0007187
Physical Location & Seq
Forward (+)
25372455 .. 25373210
756 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23500.5

Sequence Viewer

Length: 588 bp
ATGTATTATAACTTGAGTGAAATAGTAACACCACATGATAATGTTTCAATTCTCTCCATTATTCCTTTTTCTGTTATTTTGATCTTCAAATATGGCTATATATGTTTCTTGCACAATGCAGATAGCGGCCTTGTAGGATGCCGTGATTGGTCGTATAGTAGCACATGGCAAGGTTCATGCTTGTGGAGTCCAAACTGCAACAAGGCATGCACAAAAGAAGGTGCGACTGCTGGAGCCTGTGTACTTTTCAAATGCGTTTGCTATGATGGTAAAGGTTGCACTAGAACTACTCCAAACATGCATTCAACTTTCAATGTATATGTACGTACCTGGCAAGTATTACATTCGACTAACTACGTACCTATAGCTCCTCCATGTGTTTGGAAAGGATCAATGCAATTTCTATACTACGGATATTACTTACGAAGCAATGTAAAAAGACTGTGTAAGACCGTTATTCTACATCATATTTCCTTCTGCTTGTGGTGCAAAAATTGTAGGAACTTGTGTTTACGAGGGACTCCCAGTCCCACATCGCCCAAACTTTTATTGAAAGTCAGCTTTATAAGTGAGTTCACTCACTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.19

Weight (kDa)

9.03

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 9, 566
AciI CCGC 1 cut(s) 126
AclWI GGATC 1 cut(s) 397
AfaI GTAC 4 cut(s) 243, 324, 328, 360
AgsI TTSAA 6 cut(s) 48, 88, 250, 306, 313, 553
AhdI GACNNNNNGTC 1 cut(s) 525
AjnI CCWGG 1 cut(s) 329
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
AluBI AGCT 2 cut(s) 368, 561
AluI AGCT 2 cut(s) 368, 561
AlwI GGATC 1 cut(s) 397
AoxI GGCC 1 cut(s) 127
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 331
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 363
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 331
BmeRI GACNNNNNGTC 1 cut(s) 525
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 331
BmrI ACTGGG 1 cut(s) 519
BmsI GCATC 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 34
BsaAI YACGTR 2 cut(s) 326, 358
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bse1I ACTGG 1 cut(s) 525
Bse3DI GCAATG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 331
BseGI GGATG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 436
BseNI ACTGG 1 cut(s) 525
BseRI GAGGAG 1 cut(s) 360
BshFI GGCC 1 cut(s) 129
BslFI GGGAC 2 cut(s) 513, 532
BsmFI GGGAC 2 cut(s) 513, 532
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 81, 389
BspACI CCGC 1 cut(s) 126
BspANI GGCC 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 436
BsrI ACTGG 1 cut(s) 525
BssMI GATC 2 cut(s) 81, 389
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 2 cut(s) 444, 454
BstBAI YACGTR 2 cut(s) 326, 358
BstC8I GCNNGC 1 cut(s) 208
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 2 cut(s) 84, 392
BstMBI GATC 2 cut(s) 81, 389
BstMWI GCNNNNNNNGC 1 cut(s) 486
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 2 cut(s) 210, 301
BstSCI CCNGG 1 cut(s) 329
BstSFI CTRYAG 1 cut(s) 363
BstSNI TACGTA 2 cut(s) 326, 358
BstXI CCANNNNNNTGG 1 cut(s) 381
BsuRI GGCC 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 519
BtsCI GGATG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 208
Csp6I GTAC 4 cut(s) 242, 323, 327, 359
CviAII CATG 6 cut(s) 35, 165, 177, 207, 298, 375
CviJI RGCY 5 cut(s) 96, 129, 236, 368, 561
CviKI_1 RGCY 5 cut(s) 96, 129, 236, 368, 561
CviQI GTAC 4 cut(s) 242, 323, 327, 359
DpnI GATC 2 cut(s) 83, 391
DpnII GATC 2 cut(s) 81, 389
DriI GACNNNNNGTC 1 cut(s) 525
Eam1105I GACNNNNNGTC 1 cut(s) 525
Eco105I TACGTA 2 cut(s) 326, 358
EcoRII CCWGG 1 cut(s) 329
EcoT22I ATGCAT 1 cut(s) 303
FaeI CATG 6 cut(s) 38, 168, 180, 210, 301, 378
FaqI GGGAC 2 cut(s) 513, 532
FatI CATG 6 cut(s) 34, 164, 176, 206, 297, 374
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 127
FspBI CTAG 1 cut(s) 282
GluI GCNGC 1 cut(s) 127
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 129
Hin1II CATG 6 cut(s) 38, 168, 180, 210, 301, 378
HinfI GANTC 2 cut(s) 187, 520
Hpy166II GTNNAC 3 cut(s) 242, 512, 576
Hpy8I GTNNAC 3 cut(s) 242, 512, 576
HpyAV CCTTC 2 cut(s) 212, 484
HpyCH4III ACNGT 2 cut(s) 444, 454
HpyCH4IV ACGT 2 cut(s) 325, 357
HpyCH4V TGCA 8 cut(s) 112, 119, 198, 210, 279, 301, 397, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 486
HpySE526I ACGT 2 cut(s) 325, 357
Hsp92II CATG 6 cut(s) 38, 168, 180, 210, 301, 378
Kzo9I GATC 2 cut(s) 81, 389
LmnI GCTCC 2 cut(s) 233, 373
LpnPI CCDG 5 cut(s) 216, 250, 316, 343, 538
LweI GCATC 1 cut(s) 128
MaeI CTAG 1 cut(s) 282
MaeII ACGT 2 cut(s) 325, 357
MaeIII GTNAC 1 cut(s) 25
MalI GATC 2 cut(s) 83, 391
MboI GATC 2 cut(s) 81, 389
MboII GAAGA 1 cut(s) 76
MluCI AATT 3 cut(s) 48, 398, 493
MlyI GAGTC 2 cut(s) 196, 514
MnlI CCTC 2 cut(s) 381, 509
Mph1103I ATGCAT 1 cut(s) 303
MslI CAYNNNNRTG 2 cut(s) 39, 181
MspR9I CCNGG 1 cut(s) 331
Mva1269I GAATGC 1 cut(s) 301
MvaI CCWGG 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 486
NdeII GATC 2 cut(s) 81, 389
NlaIII CATG 6 cut(s) 38, 168, 180, 210, 301, 378
NlaIV GGNNCC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 303
NspI RCATGY 2 cut(s) 210, 301
PaeI GCATGC 1 cut(s) 210
PctI GAATGC 1 cut(s) 301
PkrI GCNGC 1 cut(s) 128
PleI GAGTC 2 cut(s) 195, 514
PpsI GAGTC 2 cut(s) 195, 514
Ppu21I YACGTR 2 cut(s) 326, 358
PsiI TTATAA 2 cut(s) 9, 566
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 235
RsaI GTAC 4 cut(s) 243, 324, 328, 360
RsaNI GTAC 4 cut(s) 242, 323, 327, 359
RseI CAYNNNNRTG 2 cut(s) 39, 181
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 2 cut(s) 81, 389
SchI GAGTC 2 cut(s) 196, 514
ScrFI CCNGG 1 cut(s) 331
SetI ASST 9 cut(s) 175, 223, 277, 328, 332, 360, 364, 370, 563
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 1 cut(s) 363
SmiMI CAYNNNNRTG 2 cut(s) 39, 181
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
SnaBI TACGTA 2 cut(s) 326, 358
SphI GCATGC 1 cut(s) 210
Sse9I AATT 3 cut(s) 48, 398, 493
SsiI CCGC 1 cut(s) 126
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 329
TaaI ACNGT 2 cut(s) 444, 454
TaiI ACGT 2 cut(s) 328, 360
TaqI TCGA 1 cut(s) 347
TasI AATT 3 cut(s) 48, 398, 493
TatI WGTACW 1 cut(s) 241
TauI GCSGC 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 165
TspGWI ACGGA 1 cut(s) 426
XceI RCATGY 2 cut(s) 210, 301
XspI CTAG 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.