Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007187

Physical Location & Seq

Genomic Coordinates Reverse (-)

4563838 .. 4565427

Gene Structure 1590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0052100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGAATAGATGAACAAAACCAGTTGAAAAGCAATTACACATCAGTGAAATCCTCCTCTGCTGCTGGTTTAACTGCAACTGTGGCCAAAGAACCAGAAACTGGGGAATTTTGTATTGAGGCTGGTGCATTAATGCTCGCCGACAATTTGATGGTCAGGGCTAGCTGCAGAAGATTTGGTGACCTTGGAGCTCTTCGAACTGGAATACCCATAGGAAAATGTGATATATATGTTGCTGCAGCTGAAATTGATTCACACTCTGTGCTGCAAGGTGACCTTGGAGTTCTTGGAACTGGAATACCAATAGGAAAACTTGATATGTATGTTGTTGCAGCTGGTATTAATTCAGAGTCATTGGAAGATCAAGCGGAATACCAAGCAACGCACCAAGTTATATCATCTTTCATGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0016032 GO:0019048 GO:0035197 GO:0035821 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0061980 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

137

Amino Acids

14.52

Weight (kDa)

4.66

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM	PF00493	6 - 49	1.9e-11	MCM P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31280 AT1G31290 AT1G31290 AT1G31290
fragaria_vesca	FvH4_3g11980
malus_domestica	MD05G1256100.v1.1 MD10G1236300.v1.1 MD10G1236400.v1.1
prunus_persica	Prupe.4G108000_v2.0.a1 Prupe.4G108100_v2.0.a1
pyrus_communis	pycom05g23500 pycom05g23510 pycom05g23520 pycom10g19770 pycom10g19780
rosa_chinensis	RchiOBHm_Chr5g0019581
rosa_laevigata	RLG00000032457
rosa_roxburghii	Rroxscaffold_1G00058500
rosa_rugosa	Rorug05G0052100 Rorug05G0052200
rosa_samantha	Rh5AG142700 Rh5BG141200 Rh5CG153300 Rh5DG141900
rosa_wichuraiana	Rw5G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	101
AciI	CCGC	1 cut(s)	368
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	107
AdeI	CACNNNGTG	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	4 cut(s)	165, 191, 242, 335
AluI	AGCT	4 cut(s)	165, 191, 242, 335
Alw21I	GWGCWC	1 cut(s)	193
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	6 cut(s)	62, 165, 236, 239, 265, 332
ApoI	RAATTY	1 cut(s)	107
AseI	ATTAAT	2 cut(s)	131, 342
AsuHPI	GGTGA	2 cut(s)	191, 284
AsuII	TTCGAA	1 cut(s)	196
AsuNHI	GCTAGC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	6 cut(s)	49, 152, 223, 251, 252, 344
BccI	CCATC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	2 cut(s)	166, 237
BisI	GCNGC	6 cut(s)	63, 166, 237, 240, 266, 333
BlsI	GCNGC	6 cut(s)	64, 167, 238, 241, 267, 334
BmrI	ACTGGG	1 cut(s)	111
BmtI	GCTAGC	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	184, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse1I	ACTGG	4 cut(s)	22, 106, 205, 298
BseDI	CCNNGG	2 cut(s)	184, 277
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseNI	ACTGG	4 cut(s)	22, 106, 205, 298
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	6 cut(s)	49, 152, 223, 251, 252, 344
BshFI	GGCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	101
BsnI	GGCC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	405
BspMAI	CTGCAG	2 cut(s)	170, 241
BspOI	GCTAGC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	198
BspT104I	TTCGAA	1 cut(s)	196
BsrI	ACTGG	4 cut(s)	22, 106, 205, 298
BssECI	CCNNGG	2 cut(s)	184, 277
BssMI	GATC	1 cut(s)	361
BssT1I	CCWWGG	2 cut(s)	184, 277
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	138, 163
BstEII	GGTNACC	2 cut(s)	179, 272
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstPI	GGTNACC	2 cut(s)	179, 272
BstSFI	CTRYAG	2 cut(s)	166, 237
BstV1I	GCAGC	6 cut(s)	49, 152, 223, 251, 252, 344
BsuRI	GGCC	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	138, 163
CaiI	CAGNNNCTG	1 cut(s)	101
CciI	TCATGA	1 cut(s)	405
CviAII	CATG	1 cut(s)	406
CviJI	RGCY	7 cut(s)	86, 122, 161, 165, 191, 242, 335
CviKI_1	RGCY	7 cut(s)	86, 122, 161, 165, 191, 242, 335
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DraIII	CACNNNGTG	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	191
Eco130I	CCWWGG	2 cut(s)	184, 277
Eco24I	GRGCYC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	191
Eco91I	GGTNACC	2 cut(s)	179, 272
EcoICRI	GAGCTC	1 cut(s)	191
EcoO65I	GGTNACC	2 cut(s)	179, 272
EcoT14I	CCWWGG	2 cut(s)	184, 277
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	2 cut(s)	184, 277
FaeI	CATG	1 cut(s)	409
FaiI	YATR	8 cut(s)	212, 227, 229, 231, 320, 324, 395, 407
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	1 cut(s)	405
Fnu4HI	GCNGC	6 cut(s)	63, 166, 237, 240, 266, 333
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	6 cut(s)	63, 166, 237, 240, 266, 333
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	6 cut(s)	63, 166, 237, 240, 266, 333
HaeIII	GGCC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	409
HinfI	GANTC	2 cut(s)	251, 350
HphI	GGTGA	2 cut(s)	191, 284
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	6 cut(s)	77, 128, 168, 239, 268, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	361
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	9 cut(s)	35, 51, 87, 108, 108, 142, 186, 279, 321
Lsp1109I	GCAGC	6 cut(s)	49, 152, 223, 251, 252, 344
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	179, 272
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	3 cut(s)	183, 185, 371
MhlI	GDGCHC	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	5 cut(s)	34, 107, 145, 246, 343
MluNI	TGGCCA	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	3 cut(s)	64, 67, 112
Mox20I	TGGCCA	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	86
MseI	TTAA	3 cut(s)	71, 131, 342
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	86
MspA1I	CMGCKG	2 cut(s)	242, 335
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	1 cut(s)	361
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	409
NmuCI	GTSAC	2 cut(s)	179, 272
NspV	TTCGAA	1 cut(s)	196
OliI	CACNNNNGTG	1 cut(s)	44
PagI	TCATGA	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	101
PkrI	GCNGC	6 cut(s)	64, 167, 238, 241, 267, 334
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PshBI	ATTAAT	2 cut(s)	131, 342
Psp124BI	GAGCTC	1 cut(s)	193
PspEI	GGTNACC	2 cut(s)	179, 272
PstI	CTGCAG	2 cut(s)	170, 241
PstNI	CAGNNNCTG	1 cut(s)	101
PvuII	CAGCTG	2 cut(s)	242, 335
RseI	CAYNNNNRTG	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	71, 131, 342
SatI	GCNGC	6 cut(s)	63, 166, 237, 240, 266, 333
Sau3AI	GATC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	7 cut(s)	167, 186, 193, 244, 274, 279, 337
SfcI	CTRYAG	2 cut(s)	166, 237
SfuI	TTCGAA	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	44
Sse9I	AATT	5 cut(s)	34, 107, 145, 246, 343
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	193
StyI	CCWWGG	2 cut(s)	184, 277
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	196
TasI	AATT	5 cut(s)	34, 107, 145, 246, 343
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	3 cut(s)	71, 131, 342
Tru9I	TTAA	3 cut(s)	71, 131, 342
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	2 cut(s)	179, 272
TseI	GCWGC	6 cut(s)	62, 165, 236, 239, 265, 332
Tsp45I	GTSAC	2 cut(s)	179, 272
TspDTI	ATGAA	2 cut(s)	27, 394
TspRI	CASTG	1 cut(s)	51
Van91I	CCANNNNNTGG	1 cut(s)	101
VspI	ATTAAT	2 cut(s)	131, 342
XapI	RAATTY	1 cut(s)	107
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.