Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007187

Physical Location & Seq

Genomic Coordinates Reverse (-)

14628315 .. 14632813

Gene Structure 4499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG141200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3171 bp

ATGGAAAGAGGAAGAGGCGGCGGTTACGATGGCCGTAACGGCGGTTACGGTGGCAGAGGGAACAACGGAGGAAGAGGCGGAGGAGAGAGAGGGAGAGGCAGTTATGGTAACAGAGGAGGGAGAGTTGGCGGTTATGCTGACGTGGTTTACGGCGGTGGGAATGGCGGTCGAGGAGAGAGAGGAAGAGGCGGTTATGGCGGCGGCGGTGGTTACAACCGTCAACAACCGCCGCAGCAAGATCAGCAGTGGAATAATCAGAATCGCGGCCAGGCTGGGAGGTCTGATCAGCAAACTTGGAGGTCTTCTTCTCAGCCGCAAGATCAGCAGTCGGGGAGGTATTCGGTCTCTTCTCAACCGCAGGATCAGCAGCCTTGGAGGTCTTCTGGTCAACCGCCACAGGAGCAGCAGTGGAGTCAGAATCGAGGCCAGCCTCGGAGGACTACTCCGGCACCGGCACCGGCACCGGCACCGTCTTCTTCTTCATCTCCTTCTCCAACCAAGAACAGTCTTGCTGACGACGCTGTTGTTTCTGGAGTGCAATCACTGAAAATTTCAAAGCAGACATCTCCGCCATCTCCGTTGAACAGTGCAGACAAACTTCTACCTGTGAGACGACCTGATCAGGGAGGCACAAAGGCTGTCCAAACTGTTAGGCTTCGTGCTAATCACTTCAATGTCTCGTACAATCCTCAGAGTACTATAATGCACTATGATGTTAATGTCAAACCAGTGAATGCTACAAGGAATGGCAGACCAGTTAGAATTATGAAGTCTGATCTTGCTGCAATCAGAAACAAGTTGTCCTCTGATAATCCTTCAAAATTTCCATTATTGATGACTGCATATGATGGTGAGAAGAATATCTTTAGTGCTGTGACATTACCCACTGGAGAGTTTAAGGTGGAGGTTCCTGAGGAAGAAGGCACACGCATAAGTTCGTATATAGTCACTATAAAACTTGTAAATGAGCTCAAGCTTTGCAAGTTGAAGGAGTACTTAAGTGGTCAGCTGTTGTCTATCCCTCGTGATATATTGCAGGGAATGGATTTAGTGATGAAGGAGAATCCTACTCGGCGGTTGATTCCTGTTGGCCGCAGCTTTTACCCTGCCGAATTTAATCCAGACGATGACCTTGGACAGGGTACTGCTGCATTTAGAGGGTTTCAGCATAGTTTAAGGCTCACTTCCCAGGGTCCTGCTATGTGTCTGGACTACTCAGTCTTGGCATTTCATAAGCGCATGCCAGTTATAGATTTTCTCCATGAAAACATAAGGAATTTTACTTTAAATAATTTCAGGAGGTTTAGGAGAGATGTTGAGAATGTTTTAAGGGGATTGAAAGTTACTGTGACTCATCGTCCAACCAAGCAGAAGTATGTTATCAAGGGGCTAACTGATAGGAATGCAGGGGACATTTCATTTGAAGCTGTTGATGTTGATGGCCAGGTTCCACCTAGAAGGCTTAGACTTGTTGATTATTTCAGAGACAAATACAAGGATATCAAGTACAAAGACATTCCCTGCTTAGATTTGGGGAAAAATGGTAGGAGGAATGATACACCGTTGGAATTTTGTGTCTTAGTTGAAGGGCAAAGATACCCTAAGGAGCAGTTGGGCAGAGATGCAGCCATTATGTTGAAGAACTTGTCATTGGTTGCACCAGGGGTTAGAGAGAACAACATACGCAACATGGTACGGTCGGGAGATGGACCTTGTGGTGGCGGCATTATCCAGAACTTTGGAATTGAAGTCAACATGAATATGACACAAGTAACAGGGCGTGTCATTGGCCCACCTGAGTTGAAGCTGGGGGATTTTGGTGGCAAGGTGACTAAAGTAAAAGTTGACAATGAGAAATGTCACTGGAATCTAGTTGGCAAGTCATTAGTGGAAGGAAAACCAATAGCTCGCTGGGCTGTGCTTGACTTTAGCTGTGAAGATCGGGACAGACTGGACCCTTATCAATTCATCCCAAAGCTCATCACTCGGTGCAACAAATTGGGAATGAGAATGGAAGAGCCTCGCTTGTATGAAACCTCTTCCATGAGACCATTTTCTAGCGTCAACTTGCTTCGGGAACTGCTTGAAACTGTTAATGGGAAGGTACTTCAAGAAGGCAAGGGCCACTTACAACTACTTGTTTGTGTAATGTCTAGAAAAGACCCTGGTTACAAGTATCTGAAGTGGATCTGTGAGACTCAAATTGGTATAGTGACGCAGTGCTGCTTGTCAAAGATGGCCACCAGGCCCAGTGACCAGTTTCTTGCAAATCTTGCACTGAAGATCAATGCGAAGCTTGGAGGCAGTAATGTAGAGCTGATTGACCGGCTCCCGCTCTTTGAGGGTGCTGGCCCTGTTATGTTTGTGGGGGCTGACGTTAATCATCCTGCGGCTCGGAACACAACAAGTCCATCAATAGCAGCTGTGGTTGCCACTATAAACTGGCCTGCTGTGAATCGTTATGCTGCACGAGTCCGACCCCAGTACCATCGTACTGAGAGCATATCGAATTTTGGAGACATGGTTTTGGAGCTTGTTGAATCGTATTTTAGAATAAATAAAGTGAAGCCGGAAAAAATTGTTGTTTTCCGAGATGGTGTAAGTGAGGGGCAATTTGATATGGTTCTCAATGAAGAGTTACTAGATCTGAAGAGGGCTTTGGGAACTATAAACTACTTTCCAACCATCACTCTGATTGTTGCTCAAAAGCGGCATCATACTCGGCTGTTTCAGGAGAATGGACGTTCCAATGTATCTCCAGGAACTGTTGTGGACACAAGGATTGTGCACCCATTTGAGTTTGACTTCTATCTCTGCAGTCACTATGGAAGCCTTGGGACAAGCAAGCCGACACACTACTATGTTCTTTGGGATGAGCACAGTTTTACTTCCGACCAGTTGCAGAAGCTCATATATGACTTGTGCTTTACCTTTGCAAGGTGCACGAAACCTGTCTCTTTGGTTCCGCCAGTGTACTATGCTGACCTTGTGGCCTACAGAGGGAGATTGTACCATGAGACTATGACCACGGGACTGTCTCCAGGTTCCGTAACATCCTCCTCCTCCTCGGCATCATCATCATCGGCACCTTCAACACTGTCAGTGGGTTCTCTGGATGACAGGTTTTATAGATTGCATGTTGACCTGGAAAACATTATGTTTTTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0016032 GO:0019048 GO:0035197 GO:0035821 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0061980 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

1056

Amino Acids

117.6

Weight (kDa)

9.49

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	216 - 352	2.2e-23	N-terminal domain of argonaute
ArgoL1	PF08699	362 - 412	2.4e-11	Argonaute linker 1 domain
PAZ	PF02170	418 - 539	2.5e-21	PAZ domain
ArgoL2	PF16488	557 - 602	3.2e-07	Argonaute linker 2 domain
Piwi	PF02171	713 - 1002	9.2e-93	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31280 AT1G31290 AT1G31290 AT1G31290
fragaria_vesca	FvH4_3g11980
malus_domestica	MD05G1256100.v1.1 MD10G1236300.v1.1 MD10G1236400.v1.1
prunus_persica	Prupe.4G108000_v2.0.a1 Prupe.4G108100_v2.0.a1
pyrus_communis	pycom05g23500 pycom05g23510 pycom05g23520 pycom10g19770 pycom10g19780
rosa_chinensis	RchiOBHm_Chr5g0019581
rosa_laevigata	RLG00000032457
rosa_roxburghii	Rroxscaffold_1G00058500
rosa_rugosa	Rorug05G0052100 Rorug05G0052200
rosa_samantha	Rh5AG142700 Rh5BG141200 Rh5CG153300 Rh5DG141900
rosa_wichuraiana	Rw5G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1217
AccB1I	GGYRCC	5 cut(s)	448, 454, 460, 466, 3085
AccBSI	CCGCTC	1 cut(s)	2335
AccII	CGCG	1 cut(s)	264
AclWI	GGATC	2 cut(s)	369, 2195
AcoI	YGGCCR	5 cut(s)	31, 265, 1090, 1441, 2238
AcsI	RAATTY	6 cut(s)	549, 821, 1112, 1276, 1568, 2509
AcuI	CTGAAG	3 cut(s)	2201, 2300, 2669
AdeI	CACNNNGTG	1 cut(s)	1989
AfiI	CCNNNNNNNGG	5 cut(s)	623, 1138, 1718, 2937, 3000
AflII	CTTAAG	1 cut(s)	997
AhdI	GACNNNNNGTC	1 cut(s)	1356
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	9 cut(s)	267, 1188, 1443, 1660, 2164, 2243, 2758, 3040, 3144
AjuI	GAANNNNNNNTTGG	4 cut(s)	1634, 1666, 2642, 2674
Alw21I	GWGCWC	4 cut(s)	972, 2790, 2880, 2945
Alw44I	GTGCAC	2 cut(s)	2786, 2941
AlwI	GGATC	2 cut(s)	369, 2195
AlwNI	CAGNNNCTG	1 cut(s)	2765
ApaLI	GTGCAC	2 cut(s)	2786, 2941
ApoI	RAATTY	6 cut(s)	549, 821, 1112, 1276, 1568, 2509
ArsI	GACNNNNNNTTYG	2 cut(s)	1403, 1435
AspLEI	GCGC	1 cut(s)	1239
AspS9I	GGNCC	7 cut(s)	1193, 1709, 1790, 1954, 2122, 2247, 2351
AsuHPI	GGTGA	2 cut(s)	863, 1840
AvaII	GGWCC	3 cut(s)	1193, 1709, 1954
AxyI	CCTNAGG	2 cut(s)	912, 1602
BaeGI	GKGCMC	2 cut(s)	2790, 2945
BaeI	ACNNNNGTAYC	2 cut(s)	2468, 2501
BalI	TGGCCA	2 cut(s)	1443, 2240
BanI	GGYRCC	5 cut(s)	448, 454, 460, 466, 3085
BanII	GRGCYC	1 cut(s)	972
BauI	CACGAG	2 cut(s)	1023, 2469
BbsI	GAAGAC	3 cut(s)	294, 372, 465
Bbv12I	GWGCWC	4 cut(s)	972, 2790, 2880, 2945
BceAI	ACGGC	3 cut(s)	18, 55, 166
BcgI	CGANNNNNNTGC	2 cut(s)	2702, 2736
BciT130I	CCWGG	9 cut(s)	269, 1190, 1445, 1662, 2166, 2245, 2760, 3042, 3146
BclI	TGATCA	2 cut(s)	283, 619
BfaI	CTAG	5 cut(s)	1455, 1871, 2058, 2154, 2642
BfmI	CTRYAG	2 cut(s)	2815, 2995
BfrI	CTTAAG	1 cut(s)	997
BglI	GCCNNNNNGGC	1 cut(s)	39
BglII	AGATCT	1 cut(s)	2644
BmcAI	AGTACT	2 cut(s)	697, 995
Bme1390I	CCNGG	9 cut(s)	269, 1190, 1445, 1662, 2166, 2245, 2760, 3042, 3146
Bme18I	GGWCC	3 cut(s)	1193, 1709, 1954
BmeRI	GACNNNNNGTC	1 cut(s)	1356
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	7 cut(s)	1193, 1709, 1790, 1954, 2122, 2247, 2351
BmrFI	CCNGG	9 cut(s)	269, 1190, 1445, 1662, 2166, 2245, 2760, 3042, 3146
BmrI	ACTGGG	2 cut(s)	2244, 2476
BmsI	GCATC	3 cut(s)	1612, 2722, 3080
BmuI	ACTGGG	2 cut(s)	2244, 2476
BpiI	GAAGAC	3 cut(s)	294, 372, 465
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BpmI	CTGGAG	4 cut(s)	552, 909, 2742, 3024
BpuEI	CTTGAG	1 cut(s)	956
BsaI	GGTCTC	2 cut(s)	349, 2041
BsaXI	ACNNNNNCTCC	8 cut(s)	85, 108, 115, 138, 392, 422, 2508, 2538
Bsc4I	CCNNNNNNNGG	5 cut(s)	623, 1138, 1718, 2937, 3000
Bse118I	RCCGGY	4 cut(s)	451, 457, 463, 2325
Bse21I	CCTNAGG	2 cut(s)	912, 1602
BseBI	CCWGG	9 cut(s)	269, 1190, 1445, 1662, 2166, 2245, 2760, 3042, 3146
BseGI	GGATG	5 cut(s)	1968, 2383, 2878, 3053, 3121
BseLI	CCNNNNNNNGG	5 cut(s)	623, 1138, 1718, 2937, 3000
BseMII	CTCAG	6 cut(s)	323, 704, 903, 1230, 1788, 2487
BseRI	GAGGAG	6 cut(s)	96, 129, 186, 3049, 3052, 3055
BseSI	GKGCMC	2 cut(s)	2790, 2945
BseYI	CCCAGC	3 cut(s)	272, 1807, 1911
BsgI	GTGCAG	2 cut(s)	609, 2451
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	2 cut(s)	169, 1700
BshNI	GGYRCC	5 cut(s)	448, 454, 460, 466, 3085
BsiEI	CGRYCG	2 cut(s)	169, 1700
BsiHKAI	GWGCWC	4 cut(s)	972, 2790, 2880, 2945
BsiSI	CCGG	6 cut(s)	446, 452, 458, 464, 2326, 2570
BslFI	GGGAC	4 cut(s)	1424, 1958, 2851, 3045
BslI	CCNNNNNNNGG	5 cut(s)	623, 1138, 1718, 2937, 3000
BsmBI	CGTCTC	1 cut(s)	604
BsmFI	GGGAC	4 cut(s)	1424, 1958, 2851, 3045
BsmI	GAATGC	2 cut(s)	739, 1408
Bso31I	GGTCTC	2 cut(s)	349, 2041
Bsp1286I	GDGCHC	4 cut(s)	972, 2790, 2880, 2945
BspCNI	CTCAG	6 cut(s)	322, 703, 904, 1229, 1789, 2488
BspFNI	CGCG	1 cut(s)	264
BspMAI	CTGCAG	1 cut(s)	2819
BspPI	GGATC	2 cut(s)	369, 2195
BspQI	GCTCTTC	1 cut(s)	2010
BspT107I	GGYRCC	5 cut(s)	448, 454, 460, 466, 3085
BspTI	CTTAAG	1 cut(s)	997
BspTNI	GGTCTC	2 cut(s)	349, 2041
BsrBI	CCGCTC	1 cut(s)	2335
BsrFI	RCCGGY	4 cut(s)	451, 457, 463, 2325
BssAI	RCCGGY	4 cut(s)	451, 457, 463, 2325
BssSI	CACGAG	2 cut(s)	1023, 2469
BssT1I	CCWWGG	3 cut(s)	371, 1132, 2833
Bst2BI	CACGAG	2 cut(s)	1023, 2469
Bst2UI	CCWGG	9 cut(s)	269, 1190, 1445, 1662, 2166, 2245, 2760, 3042, 3146
Bst6I	CTCTTC	8 cut(s)	7, 67, 178, 352, 2010, 2044, 2628, 2645
BstAFI	CTTAAG	1 cut(s)	997
BstAPI	GCANNNNNTGC	1 cut(s)	2273
BstC8I	GCNNGC	6 cut(s)	428, 1241, 1909, 2350, 2448, 2846
BstDSI	CCRYGG	1 cut(s)	3027
BstENI	CCTNNNNNAGG	2 cut(s)	1136, 2935
BstF5I	GGATG	5 cut(s)	1968, 2383, 2878, 3053, 3121
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	1239
BstMCI	CGRYCG	2 cut(s)	169, 1700
BstNI	CCWGG	9 cut(s)	269, 1190, 1445, 1662, 2166, 2245, 2760, 3042, 3146
BstNSI	RCATGY	2 cut(s)	1243, 3140
BstSCI	CCNGG	9 cut(s)	267, 1188, 1443, 1660, 2164, 2243, 2758, 3040, 3144
BstSFI	CTRYAG	2 cut(s)	2815, 2995
BstSLI	GKGCMC	2 cut(s)	2790, 2945
BstUI	CGCG	1 cut(s)	264
BstV2I	GAAGAC	3 cut(s)	294, 372, 465
BstX2I	RGATCY	2 cut(s)	2187, 2644
BstXI	CCANNNNNNTGG	1 cut(s)	1739
BstYI	RGATCY	2 cut(s)	2187, 2644
Bsu36I	CCTNAGG	2 cut(s)	912, 1602
BtgI	CCRYGG	1 cut(s)	3027
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	5 cut(s)	1968, 2383, 2878, 3053, 3121
BtsI	GCAGTG	3 cut(s)	251, 413, 2225
Cac8I	GCNNGC	6 cut(s)	428, 1241, 1909, 2350, 2448, 2846
CaiI	CAGNNNCTG	1 cut(s)	2765
CfoI	GCGC	1 cut(s)	1239
Cfr10I	RCCGGY	4 cut(s)	451, 457, 463, 2325
Cfr13I	GGNCC	7 cut(s)	1193, 1709, 1790, 1954, 2122, 2247, 2351
CseI	GACGC	3 cut(s)	527, 2050, 2224
CspCI	CAANNNNNGTGG	2 cut(s)	1782, 1817
CviAII	CATG	8 cut(s)	1240, 1262, 1690, 1756, 2044, 2521, 3014, 3137
DraI	TTTAAA	1 cut(s)	1287
DraIII	CACNNNGTG	1 cut(s)	1989
DrdI	GACNNNNNNGTC	1 cut(s)	1217
DriI	GACNNNNNGTC	1 cut(s)	1356
DseDI	GACNNNNNNGTC	1 cut(s)	1217
EaeI	YGGCCR	5 cut(s)	31, 265, 1090, 1441, 2238
Eam1104I	CTCTTC	8 cut(s)	7, 67, 178, 352, 2010, 2044, 2628, 2645
Eam1105I	GACNNNNNGTC	1 cut(s)	1356
EarI	CTCTTC	8 cut(s)	7, 67, 178, 352, 2010, 2044, 2628, 2645
EciI	GGCGGA	3 cut(s)	93, 558, 2955
Ecl136II	GAGCTC	1 cut(s)	970
Eco130I	CCWWGG	3 cut(s)	371, 1132, 2833
Eco24I	GRGCYC	1 cut(s)	972
Eco31I	GGTCTC	2 cut(s)	349, 2041
Eco32I	GATATC	1 cut(s)	1501
Eco47I	GGWCC	3 cut(s)	1193, 1709, 1954
Eco53kI	GAGCTC	1 cut(s)	970
Eco57I	CTGAAG	3 cut(s)	2201, 2300, 2669
Eco81I	CCTNAGG	2 cut(s)	912, 1602
EcoICRI	GAGCTC	1 cut(s)	970
EcoNI	CCTNNNNNAGG	2 cut(s)	1136, 2935
EcoO109I	RGGNCCY	1 cut(s)	1193
EcoRII	CCWGG	9 cut(s)	267, 1188, 1443, 1660, 2164, 2243, 2758, 3040, 3144
EcoRV	GATATC	1 cut(s)	1501
EcoT14I	CCWWGG	3 cut(s)	371, 1132, 2833
EcoT38I	GRGCYC	1 cut(s)	972
ErhI	CCWWGG	3 cut(s)	371, 1132, 2833
Esp3I	CGTCTC	1 cut(s)	604
FaeI	CATG	8 cut(s)	1243, 1265, 1693, 1759, 2047, 2524, 3017, 3140
FalI	AAGNNNNNCTT	8 cut(s)	848, 880, 980, 1012, 1168, 1200, 2111, 2143
FaqI	GGGAC	4 cut(s)	1424, 1958, 2851, 3045
FatI	CATG	8 cut(s)	1239, 1261, 1689, 1755, 2043, 2520, 3013, 3136
FauI	CCCGC	1 cut(s)	2340
FauNDI	CATATG	1 cut(s)	844
FbaI	TGATCA	2 cut(s)	283, 619
FokI	GGATG	5 cut(s)	1955, 2370, 2885, 3040, 3128
FriOI	GRGCYC	1 cut(s)	972
FspBI	CTAG	5 cut(s)	1455, 1871, 2058, 2154, 2642
GlaI	GCGC	1 cut(s)	1238
GsaI	CCCAGC	3 cut(s)	276, 1811, 1915
GsuI	CTGGAG	4 cut(s)	552, 909, 2742, 3024
HapII	CCGG	6 cut(s)	446, 452, 458, 464, 2326, 2570
HgaI	GACGC	3 cut(s)	527, 2050, 2224
HhaI	GCGC	1 cut(s)	1239
Hin1II	CATG	8 cut(s)	1243, 1265, 1693, 1759, 2047, 2524, 3017, 3140
Hin6I	GCGC	1 cut(s)	1237
HinP1I	GCGC	1 cut(s)	1237
HincII	GTYRAC	6 cut(s)	221, 389, 1753, 1846, 2065, 3142
HindII	GTYRAC	6 cut(s)	221, 389, 1753, 1846, 2065, 3142
HindIII	AAGCTT	2 cut(s)	974, 2294
HpaII	CCGG	6 cut(s)	446, 452, 458, 464, 2326, 2570
HphI	GGTGA	2 cut(s)	863, 1840
Hpy99I	CGWCG	1 cut(s)	521
HpyCH4IV	ACGT	3 cut(s)	141, 2376, 2743
HpySE526I	ACGT	3 cut(s)	141, 2376, 2743
Hsp92II	CATG	8 cut(s)	1243, 1265, 1693, 1759, 2047, 2524, 3017, 3140
HspAI	GCGC	1 cut(s)	1237
Ksp22I	TGATCA	2 cut(s)	283, 619
LguI	GCTCTTC	1 cut(s)	2010
LmnI	GCTCC	4 cut(s)	400, 1606, 2334, 2530
LweI	GCATC	3 cut(s)	1612, 2722, 3080
MaeI	CTAG	5 cut(s)	1455, 1871, 2058, 2154, 2642
MaeII	ACGT	3 cut(s)	141, 2376, 2743
MbiI	CCGCTC	1 cut(s)	2335
MflI	RGATCY	2 cut(s)	2187, 2644
MhlI	GDGCHC	4 cut(s)	972, 2790, 2880, 2945
MlsI	TGGCCA	2 cut(s)	1443, 2240
MluNI	TGGCCA	2 cut(s)	1443, 2240
MlyI	GAGTC	4 cut(s)	421, 1345, 2191, 2481
MmeI	TCCRAC	6 cut(s)	518, 1385, 1545, 2500, 2705, 2916
Mox20I	TGGCCA	2 cut(s)	1443, 2240
MscI	TGGCCA	2 cut(s)	1443, 2240
MseI	TTAA	9 cut(s)	717, 897, 998, 1116, 1175, 1286, 1328, 2094, 2379
MslI	CAYNNNNRTG	4 cut(s)	672, 711, 1760, 2859
Msp20I	TGGCCA	2 cut(s)	1443, 2240
MspA1I	CMGCKG	2 cut(s)	1009, 2423
MspCI	CTTAAG	1 cut(s)	997
MspI	CCGG	6 cut(s)	446, 452, 458, 464, 2326, 2570
MspR9I	CCNGG	9 cut(s)	269, 1190, 1445, 1662, 2166, 2245, 2760, 3042, 3146
Mva1269I	GAATGC	2 cut(s)	739, 1408
MvaI	CCWGG	9 cut(s)	269, 1190, 1445, 1662, 2166, 2245, 2760, 3042, 3146
MvnI	CGCG	1 cut(s)	264
NdeI	CATATG	1 cut(s)	844
NlaIII	CATG	8 cut(s)	1243, 1265, 1693, 1759, 2047, 2524, 3017, 3140
NmeAIII	GCCGAG	3 cut(s)	1051, 2701, 3047
NmuCI	GTSAC	8 cut(s)	874, 946, 1348, 1828, 1859, 2212, 2252, 2819
NspI	RCATGY	2 cut(s)	1243, 3140
PaeI	GCATGC	1 cut(s)	1243
PasI	CCCWGGG	1 cut(s)	1189
PciSI	GCTCTTC	1 cut(s)	2010
PctI	GAATGC	2 cut(s)	739, 1408
PfeI	GAWTC	7 cut(s)	259, 418, 1063, 1081, 1867, 2455, 2540
PfoI	TCCNGGA	1 cut(s)	2758
PleI	GAGTC	4 cut(s)	420, 1345, 2191, 2480
PpsI	GAGTC	4 cut(s)	420, 1345, 2191, 2480
PpuMI	RGGWCCY	1 cut(s)	1193
Psp124BI	GAGCTC	1 cut(s)	972
Psp5II	RGGWCCY	1 cut(s)	1193
Psp6I	CCWGG	9 cut(s)	267, 1188, 1443, 1660, 2164, 2243, 2758, 3040, 3144
PspFI	CCCAGC	3 cut(s)	272, 1807, 1911
PspGI	CCWGG	9 cut(s)	267, 1188, 1443, 1660, 2164, 2243, 2758, 3040, 3144
PspPI	GGNCC	7 cut(s)	1193, 1709, 1790, 1954, 2122, 2247, 2351
PspPPI	RGGWCCY	1 cut(s)	1193
PstI	CTGCAG	1 cut(s)	2819
PstNI	CAGNNNCTG	1 cut(s)	2765
PsuI	RGATCY	2 cut(s)	2187, 2644
PvuII	CAGCTG	2 cut(s)	1009, 2423
RseI	CAYNNNNRTG	4 cut(s)	672, 711, 1760, 2859
SacI	GAGCTC	1 cut(s)	972
SapI	GCTCTTC	1 cut(s)	2010
SaqAI	TTAA	9 cut(s)	717, 897, 998, 1116, 1175, 1286, 1328, 2094, 2379
Sau96I	GGNCC	7 cut(s)	1193, 1709, 1790, 1954, 2122, 2247, 2351
ScaI	AGTACT	2 cut(s)	697, 995
SchI	GAGTC	4 cut(s)	421, 1345, 2191, 2481
ScrFI	CCNGG	9 cut(s)	269, 1190, 1445, 1662, 2166, 2245, 2760, 3042, 3146
SduI	GDGCHC	4 cut(s)	972, 2790, 2880, 2945
SfaNI	GCATC	3 cut(s)	1612, 2722, 3080
SfcI	CTRYAG	2 cut(s)	2815, 2995
SinI	GGWCC	3 cut(s)	1193, 1709, 1954
SmiMI	CAYNNNNRTG	4 cut(s)	672, 711, 1760, 2859
SmlI	CTYRAG	2 cut(s)	971, 997
SmoI	CTYRAG	2 cut(s)	971, 997
SphI	GCATGC	1 cut(s)	1243
SspMI	CTAG	5 cut(s)	1455, 1871, 2058, 2154, 2642
SstI	GAGCTC	1 cut(s)	972
StyD4I	CCNGG	9 cut(s)	267, 1188, 1443, 1660, 2164, 2243, 2758, 3040, 3144
StyI	CCWWGG	3 cut(s)	371, 1132, 2833
TaiI	ACGT	3 cut(s)	144, 2379, 2746
TaqI	TCGA	3 cut(s)	169, 421, 2507
TaqII	GACCGA	1 cut(s)	331
TatI	WGTACW	4 cut(s)	695, 993, 1506, 2973
TfiI	GAWTC	7 cut(s)	259, 418, 1063, 1081, 1867, 2455, 2540
Tru1I	TTAA	9 cut(s)	717, 897, 998, 1116, 1175, 1286, 1328, 2094, 2379
Tru9I	TTAA	9 cut(s)	717, 897, 998, 1116, 1175, 1286, 1328, 2094, 2379
TseFI	GTSAC	8 cut(s)	874, 946, 1348, 1828, 1859, 2212, 2252, 2819
Tsp45I	GTSAC	8 cut(s)	874, 946, 1348, 1828, 1859, 2212, 2252, 2819
TspGWI	ACGGA	3 cut(s)	81, 567, 3037
Vha464I	CTTAAG	1 cut(s)	997
VneI	GTGCAC	2 cut(s)	2786, 2941
VpaK11BI	GGWCC	3 cut(s)	1193, 1709, 1954
XagI	CCTNNNNNAGG	2 cut(s)	1136, 2935
XapI	RAATTY	6 cut(s)	549, 821, 1112, 1276, 1568, 2509
XbaI	TCTAGA	1 cut(s)	2153
XceI	RCATGY	2 cut(s)	1243, 3140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1908
XspI	CTAG	5 cut(s)	1455, 1871, 2058, 2154, 2642
ZrmI	AGTACT	2 cut(s)	697, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.