Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007187

Physical Location & Seq

Genomic Coordinates Reverse (-)

14894923 .. 14899477

Gene Structure 4555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG142700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3129 bp

ATGGTAACAGAGGAGGGAGAGTTGGCGGTTATGCTGACGTGGTTTACGGCGGTGGGAATGGCGGTCGAGGAGAGAGAGGAAGAGGCGGTTATGGCGGTGGCGGTGGTGGTTACAACCGTCAACAACCGCCGCAGCAAGATCAGCAGTGGAATAATCAGAATCGCGGCCAGCCTGGGAGGTCTGATCAGCAAACGTGGAGGTCTTCTTCTTCTTCTCAGCCGCAAGATCAGCAGTCGGGGAGGTATTCGGCCTCTTCTCAACCGCAGGATCAGCAGCGTTGGAGGTCTTCTGGTCAACCGCCACAGGAGCAGCAGTGGCGTCAGAATCGAGGCCAGCCTCGGGGGACTTCTCCGGCACCGGCTCTGGCACCGTCTTCTTCTTCTTCTTCATCTCCTTCTCCAACCAAGAACAGTCTTGCTGACGCTGTTACTGATCGTACTTCCTGTTTTGTTCTATGTAGACGCTGTTGTTTCTGGAGTGCAATCACTGAAAATTTCAAAGCAGACATCTCCGCCATCTCCGTTGAACAGTGCAGACAAACTTCTACCTGTGAGACGACCTGATCAGGGAGGCACAAAGGCTGTCCAAACTGTTAGGCTTCGTGCTAATCACTTCAATGTCTCGTACAATCCTCAGAGTACTATAATGCACTATGATGTTAATGTCAAACCAGTGAATGCTACAAGGAATGGCAGACCAGTTAGAATTATGAAGTCTGATCTTGCTGCAATCAGAAACAAGTTGTCCTCTGATAATCCTTCAAAATTTCCATTATTGATGACTGCATATGATGGTGAGAAGAATATCTTTAGTGCTGTGACATTACCCACTGGAGAGTTTAAGGTGGAGGTTCCTGAGGAAGAAGGCACACGCATAAGTTCGTATATAGTCACTATAAAACTTGTAAATGAGCTCAAGCTTTGCAAGTTGAAGGAGTACTTAAGTGGTCAGCTGTTGTCTATCCCTCGTGATATATTGCAGGGAATGGATTTAGTGATGAAGGAGAATCCTACTCGGCGGTTGATTCCTGTTGGCCGCAACTTTTACCCTGCTGAATTTAATCCAGACGATGACCTTGGACAGGGTACTGCTGCATTTAGAGGGTTTCAGCATAGTTTAAGGCTCACTTCCCAGGGTCCTGCTATGTGTCTGGACTACTCAGTCTTGGCATTTCATAAGCGCATGCCAGTTATAGATTTTCTCCATGAAAAGATAAGGAATTTTACTTTAAATAATTTCAGGAGGTTTAAGAGAGATGTTGAGAATGCTTTAAGGGGATTGAAAGTTACTGTGACTCATCGTCCAACCAAGCAGAAGTATGTTATCAAGGGGCTAACTGATAGGAATGCAGGGGACATTACATTTGAAGCTGTTGATGTTGATGGCCAGGTTCCACCTAGAAGGCTTAGACTTGTTGATTATTTCAGAGACAAATACAAGGATATCAAGTACAAAGACATTCCCTGCTTAGATTTAGGGAAAAATGGTAGGAGGAATGATACACCGTTGGAATTTTGTGTCTTAGTTGAAGGGCAAAGATACCCTAAGGAGCAGTTGGGCAGAGATGCAGCCATTATGTTGAAGAACTTGTCATTGGTTACACCAGGGGTTAGAGAGAACAACATACGCAACATGGCACGGTCGGGAGATGGACCTTGTGGTGGCGGCATTATCCAGAACTTTGGAATTGAAGTCAACATGAATATGACACAAGTAACAGGGCGTGTCATTGGCCCACCTGAGTTGAAGCTGGGGGATTTTGGTGGCAAGGTGACTAAAGTAAAAGTTGACAATGAGAAATGTCACTGGAATCTAGTTGGCAAGTCATTAGTGGAAGGAAAACCAATAGCTCGCTGGGCTGTGCTTGACTTTAGCTGTTTTGATCAAGACTGTTATGATCGGGACAAACTGGACCCTTATCAATTTATCCCAAAGCTCATCACTCGGTGCAACAAATTGGGAATGAGAATGGAAGAGCCTCGCTTGTATGAAACCTCTTCCATGAGACCATTTTCTAGCGTCAACTTGCTTCGGGAACTGCTTGAAACTGTTAATGGGAAGGTACTTGAAGAAGGCAAGGGCCACTTACAACTACTTGTTTGTGTAATGTCTAGAAAAGACCCTGGTTACAAGTATCTGAAGTGGATCTGTGAGACTCAAATTGGTATAGTGACGCAGTGCTGCTTGTCAAAGATGGCCACCAGGCCCAGTGACCAGTTTCTTGCAAATCTAGCACTGAAGATCAATGCGAAGCTTGGAGGCAGTAATGTAGAGCTGATTGACCGGCTCCCGCTCTTTGAGGGTGCTGGCCCTGTTATGTTTGTGGGGGCTGACGTTAATCATCCTGCGGCTCGGAACACAACAAGTCCATCAATAGCAGCTGTGGTTGCCACTATAAACTGGCCTGCTGTGAATCGTTATGCTGCACGAGTCCGACCCCAGTACCATCGTACTGAGAGCATATCGAATTTTGGAGACATGGTTTTGGAGCTTGTTGAATCGTATTTTAGAATAAATAAAGTGAAGCCTGAAAAAATTGTTGTTTTCCGAGATGGTGTGAGTGAGGGGCAATTTGATATGGTTCTCAATGAAGAGTTACTAGATCTGAAGAGGGCTTTGGGAACTATAAACTACTTTCCAACCATCACTCTGATTGTTGCTCAAAAGCGGCATCATACTCGGCTGTTTCAGGAGAATGGACGTTCCAATGTATCTCCAGGAACTGTTGTGGACACAAGGATTGTGCACCCATTTGAGTTTGACTTCTATCTCTGCAGTCACTATGGAAGCCTTGGGACAAGCAAGCCGACACACTACTATGTTCTTTGGGATGAGCACAGTTTTACTTCCGACCAGTTGCAGAAGCTCATATATGACTTGTGCTTTACCTTTGCAAGGTGCACGAAACCTGTCTCTTTGGTTCCGCCAGTGTACTATGCTGACCTTGTGGCCTACAGAGGGAGATTGTACCATGAGACTATGACCGCGGGACTGTCTCCAGGTTCCGTAACATCCTCCTCCTCCTCAGCATCATCATCATCGGCACCTTCAACACTGTCGGTGGGTTCTCTGGATGACAGGTTTTATAGATTGCATGTTGACCTGGAAAACATTATGTTTTTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0016032 GO:0019048 GO:0035197 GO:0035821 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0061980 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

1042

Amino Acids

116.87

Weight (kDa)

9.45

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	197 - 333	2.2e-23	N-terminal domain of argonaute
ArgoL1	PF08699	343 - 393	5.2e-11	Argonaute linker 1 domain
PAZ	PF02170	411 - 520	1.1e-21	PAZ domain
ArgoL2	PF16488	538 - 583	3.2e-07	Argonaute linker 2 domain
Piwi	PF02171	699 - 988	8.9e-93	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31280 AT1G31290 AT1G31290 AT1G31290
fragaria_vesca	FvH4_3g11980
malus_domestica	MD05G1256100.v1.1 MD10G1236300.v1.1 MD10G1236400.v1.1
prunus_persica	Prupe.4G108000_v2.0.a1 Prupe.4G108100_v2.0.a1
pyrus_communis	pycom05g23500 pycom05g23510 pycom05g23520 pycom10g19770 pycom10g19780
rosa_chinensis	RchiOBHm_Chr5g0019581
rosa_laevigata	RLG00000032457
rosa_roxburghii	Rroxscaffold_1G00058500
rosa_rugosa	Rorug05G0052100 Rorug05G0052200
rosa_samantha	Rh5AG142700 Rh5BG141200 Rh5CG153300 Rh5DG141900
rosa_wichuraiana	Rw5G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1160
AccB1I	GGYRCC	3 cut(s)	354, 366, 3043
AccBSI	CCGCTC	1 cut(s)	2293
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	2 cut(s)	164, 2987
AclWI	GGATC	2 cut(s)	275, 2153
AcoI	YGGCCR	4 cut(s)	165, 1033, 1384, 2196
AcsI	RAATTY	6 cut(s)	492, 764, 1055, 1219, 1511, 2467
AcuI	CTGAAG	3 cut(s)	2159, 2258, 2627
AcyI	GRCGYC	1 cut(s)	318
AdeI	CACNNNGTG	1 cut(s)	1947
AfiI	CCNNNNNNNGG	6 cut(s)	339, 566, 1081, 1661, 2895, 2958
AflII	CTTAAG	1 cut(s)	940
AhdI	GACNNNNNGTC	1 cut(s)	1299
AjiI	CACGTC	1 cut(s)	39
AjnI	CCWGG	9 cut(s)	171, 1131, 1386, 1603, 2122, 2201, 2716, 2998, 3102
AjuI	GAANNNNNNNTTGG	4 cut(s)	1577, 1609, 2600, 2632
Alw21I	GWGCWC	4 cut(s)	915, 2748, 2838, 2903
Alw26I	GTCTC	9 cut(s)	547, 625, 1422, 1999, 2147, 2469, 2917, 2969, 3000
Alw44I	GTGCAC	2 cut(s)	2744, 2899
AlwI	GGATC	2 cut(s)	275, 2153
AlwNI	CAGNNNCTG	1 cut(s)	2723
Ama87I	CYCGRG	1 cut(s)	338
ApaLI	GTGCAC	2 cut(s)	2744, 2899
ApeKI	GCWGC	9 cut(s)	132, 273, 309, 725, 1091, 1568, 2181, 2378, 2423
ApoI	RAATTY	6 cut(s)	492, 764, 1055, 1219, 1511, 2467
ArsI	GACNNNNNNTTYG	2 cut(s)	1346, 1378
AspLEI	GCGC	1 cut(s)	1182
AspS9I	GGNCC	7 cut(s)	1136, 1652, 1733, 1912, 2080, 2205, 2309
AsuHPI	GGTGA	2 cut(s)	806, 1783
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	3 cut(s)	1136, 1652, 1912
AxyI	CCTNAGG	2 cut(s)	855, 1545
BaeGI	GKGCMC	2 cut(s)	2748, 2903
BaeI	ACNNNNGTAYC	2 cut(s)	2426, 2459
BalI	TGGCCA	2 cut(s)	1386, 2198
BanI	GGYRCC	3 cut(s)	354, 366, 3043
BanII	GRGCYC	1 cut(s)	915
BauI	CACGAG	2 cut(s)	966, 2427
BbsI	GAAGAC	3 cut(s)	194, 278, 365
Bbv12I	GWGCWC	4 cut(s)	915, 2748, 2838, 2903
BbvCI	CCTCAGC	1 cut(s)	3025
BbvI	GCAGC	9 cut(s)	144, 285, 321, 712, 1078, 1580, 2168, 2390, 2410
BccI	CCATC	9 cut(s)	523, 785, 1376, 1643, 2188, 2377, 2454, 2546, 2651
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	2 cut(s)	2660, 2694
BciT130I	CCWGG	9 cut(s)	173, 1133, 1388, 1605, 2124, 2203, 2718, 3000, 3104
BclI	TGATCA	3 cut(s)	183, 562, 1882
BcoDI	GTCTC	9 cut(s)	547, 625, 1422, 1999, 2147, 2469, 2917, 2969, 3000
BfaI	CTAG	6 cut(s)	1398, 1814, 2016, 2112, 2231, 2600
BfmI	CTRYAG	2 cut(s)	2773, 2953
BfrI	CTTAAG	1 cut(s)	940
BglII	AGATCT	1 cut(s)	2602
BmcAI	AGTACT	2 cut(s)	640, 938
Bme1390I	CCNGG	9 cut(s)	173, 1133, 1388, 1605, 2124, 2203, 2718, 3000, 3104
Bme18I	GGWCC	3 cut(s)	1136, 1652, 1912
BmeRI	GACNNNNNGTC	1 cut(s)	1299
BmeT110I	CYCGRG	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	39
BmgT120I	GGNCC	7 cut(s)	1136, 1652, 1733, 1912, 2080, 2205, 2309
BmrFI	CCNGG	9 cut(s)	173, 1133, 1388, 1605, 2124, 2203, 2718, 3000, 3104
BmrI	ACTGGG	2 cut(s)	2202, 2434
BmsI	GCATC	3 cut(s)	1555, 2680, 3038
BmuI	ACTGGG	2 cut(s)	2202, 2434
BpiI	GAAGAC	3 cut(s)	194, 278, 365
BpmI	CTGGAG	4 cut(s)	495, 852, 2700, 2982
Bpu10I	CCTNAGC	1 cut(s)	3025
BpuEI	CTTGAG	1 cut(s)	899
BsaHI	GRCGYC	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	1999
BsaJI	CCNNGG	9 cut(s)	172, 337, 1075, 1131, 1132, 1604, 2122, 2791, 2985
BsaXI	ACNNNNNCTCC	6 cut(s)	5, 35, 298, 328, 2466, 2496
Bsc4I	CCNNNNNNNGG	6 cut(s)	339, 566, 1081, 1661, 2895, 2958
Bse118I	RCCGGY	2 cut(s)	357, 2283
Bse21I	CCTNAGG	2 cut(s)	855, 1545
BseBI	CCWGG	9 cut(s)	173, 1133, 1388, 1605, 2124, 2203, 2718, 3000, 3104
BseDI	CCNNGG	9 cut(s)	172, 337, 1075, 1131, 1132, 1604, 2122, 2791, 2985
BseGI	GGATG	4 cut(s)	2341, 2836, 3011, 3079
BseLI	CCNNNNNNNGG	6 cut(s)	339, 566, 1081, 1661, 2895, 2958
BseMII	CTCAG	7 cut(s)	229, 647, 846, 1173, 1731, 2445, 3039
BseRI	GAGGAG	5 cut(s)	26, 83, 3007, 3010, 3013
BseSI	GKGCMC	2 cut(s)	2748, 2903
BseXI	GCAGC	9 cut(s)	144, 285, 321, 712, 1078, 1580, 2168, 2390, 2410
BseYI	CCCAGC	2 cut(s)	1750, 1854
BsgI	GTGCAG	2 cut(s)	552, 2409
Bsh1236I	CGCG	2 cut(s)	164, 2987
Bsh1285I	CGRYCG	2 cut(s)	66, 1643
BshNI	GGYRCC	3 cut(s)	354, 366, 3043
BsiEI	CGRYCG	2 cut(s)	66, 1643
BsiHKAI	GWGCWC	4 cut(s)	915, 2748, 2838, 2903
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	3 cut(s)	352, 358, 2284
BslFI	GGGAC	5 cut(s)	357, 1367, 1916, 2809, 3003
BslI	CCNNNNNNNGG	6 cut(s)	339, 566, 1081, 1661, 2895, 2958
BsmAI	GTCTC	9 cut(s)	547, 625, 1422, 1999, 2147, 2469, 2917, 2969, 3000
BsmBI	CGTCTC	1 cut(s)	547
BsmFI	GGGAC	5 cut(s)	357, 1367, 1916, 2809, 3003
BsmI	GAATGC	3 cut(s)	682, 1270, 1351
Bso31I	GGTCTC	1 cut(s)	1999
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	4 cut(s)	915, 2748, 2838, 2903
BspCNI	CTCAG	7 cut(s)	228, 646, 847, 1172, 1732, 2446, 3038
BspFNI	CGCG	2 cut(s)	164, 2987
BspMAI	CTGCAG	1 cut(s)	2777
BspPI	GGATC	2 cut(s)	275, 2153
BspQI	GCTCTTC	1 cut(s)	1968
BspT107I	GGYRCC	3 cut(s)	354, 366, 3043
BspTI	CTTAAG	1 cut(s)	940
BspTNI	GGTCTC	1 cut(s)	1999
BsrBI	CCGCTC	1 cut(s)	2293
BsrFI	RCCGGY	2 cut(s)	357, 2283
BssAI	RCCGGY	2 cut(s)	357, 2283
BssECI	CCNNGG	9 cut(s)	172, 337, 1075, 1131, 1132, 1604, 2122, 2791, 2985
BssNI	GRCGYC	1 cut(s)	318
BssSI	CACGAG	2 cut(s)	966, 2427
BssT1I	CCWWGG	2 cut(s)	1075, 2791
Bst2BI	CACGAG	2 cut(s)	966, 2427
Bst2UI	CCWGG	9 cut(s)	173, 1133, 1388, 1605, 2124, 2203, 2718, 3000, 3104
Bst6I	CTCTTC	6 cut(s)	75, 258, 1968, 2002, 2586, 2603
BstACI	GRCGYC	1 cut(s)	318
BstAFI	CTTAAG	1 cut(s)	940
BstC8I	GCNNGC	7 cut(s)	169, 334, 1184, 1852, 2308, 2406, 2804
BstDSI	CCRYGG	1 cut(s)	2985
BstENI	CCTNNNNNAGG	2 cut(s)	1079, 2893
BstF5I	GGATG	4 cut(s)	2341, 2836, 3011, 3079
BstFNI	CGCG	2 cut(s)	164, 2987
BstHHI	GCGC	1 cut(s)	1182
BstMAI	GTCTC	9 cut(s)	547, 625, 1422, 1999, 2147, 2469, 2917, 2969, 3000
BstMCI	CGRYCG	2 cut(s)	66, 1643
BstMWI	GCNNNNNNNGC	9 cut(s)	92, 141, 228, 270, 306, 315, 1856, 2231, 2387
BstNI	CCWGG	9 cut(s)	173, 1133, 1388, 1605, 2124, 2203, 2718, 3000, 3104
BstNSI	RCATGY	2 cut(s)	1186, 3098
BstSCI	CCNGG	9 cut(s)	171, 1131, 1386, 1603, 2122, 2201, 2716, 2998, 3102
BstSFI	CTRYAG	2 cut(s)	2773, 2953
BstSLI	GKGCMC	2 cut(s)	2748, 2903
BstUI	CGCG	2 cut(s)	164, 2987
BstV1I	GCAGC	9 cut(s)	144, 285, 321, 712, 1078, 1580, 2168, 2390, 2410
BstV2I	GAAGAC	3 cut(s)	194, 278, 365
BstX2I	RGATCY	2 cut(s)	2145, 2602
BstXI	CCANNNNNNTGG	1 cut(s)	1682
BstYI	RGATCY	2 cut(s)	2145, 2602
Bsu36I	CCTNAGG	2 cut(s)	855, 1545
BtgI	CCRYGG	1 cut(s)	2985
BtrI	CACGTC	1 cut(s)	39
BtsCI	GGATG	4 cut(s)	2341, 2836, 3011, 3079
BtsI	GCAGTG	3 cut(s)	151, 319, 2183
Cac8I	GCNNGC	7 cut(s)	169, 334, 1184, 1852, 2308, 2406, 2804
CaiI	CAGNNNCTG	1 cut(s)	2723
CfoI	GCGC	1 cut(s)	1182
Cfr10I	RCCGGY	2 cut(s)	357, 2283
Cfr13I	GGNCC	7 cut(s)	1136, 1652, 1733, 1912, 2080, 2205, 2309
Cfr42I	CCGCGG	1 cut(s)	2988
CseI	GACGC	5 cut(s)	307, 430, 470, 2008, 2182
CspCI	CAANNNNNGTGG	2 cut(s)	1725, 1760
CviAII	CATG	8 cut(s)	1183, 1205, 1633, 1699, 2002, 2479, 2972, 3095
DraI	TTTAAA	1 cut(s)	1230
DraIII	CACNNNGTG	1 cut(s)	1947
DrdI	GACNNNNNNGTC	1 cut(s)	1160
DriI	GACNNNNNGTC	1 cut(s)	1299
DseDI	GACNNNNNNGTC	1 cut(s)	1160
EaeI	YGGCCR	4 cut(s)	165, 1033, 1384, 2196
Eam1104I	CTCTTC	6 cut(s)	75, 258, 1968, 2002, 2586, 2603
Eam1105I	GACNNNNNGTC	1 cut(s)	1299
EarI	CTCTTC	6 cut(s)	75, 258, 1968, 2002, 2586, 2603
EciI	GGCGGA	2 cut(s)	501, 2913
Ecl136II	GAGCTC	1 cut(s)	913
Eco130I	CCWWGG	2 cut(s)	1075, 2791
Eco24I	GRGCYC	1 cut(s)	915
Eco31I	GGTCTC	1 cut(s)	1999
Eco32I	GATATC	1 cut(s)	1444
Eco47I	GGWCC	3 cut(s)	1136, 1652, 1912
Eco53kI	GAGCTC	1 cut(s)	913
Eco57I	CTGAAG	3 cut(s)	2159, 2258, 2627
Eco81I	CCTNAGG	2 cut(s)	855, 1545
Eco88I	CYCGRG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	913
EcoNI	CCTNNNNNAGG	2 cut(s)	1079, 2893
EcoO109I	RGGNCCY	1 cut(s)	1136
EcoRII	CCWGG	9 cut(s)	171, 1131, 1386, 1603, 2122, 2201, 2716, 2998, 3102
EcoRV	GATATC	1 cut(s)	1444
EcoT14I	CCWWGG	2 cut(s)	1075, 2791
EcoT38I	GRGCYC	1 cut(s)	915
ErhI	CCWWGG	2 cut(s)	1075, 2791
Esp3I	CGTCTC	1 cut(s)	547
FaeI	CATG	8 cut(s)	1186, 1208, 1636, 1702, 2005, 2482, 2975, 3098
FalI	AAGNNNNNCTT	8 cut(s)	791, 823, 923, 955, 1111, 1143, 2069, 2101
FaqI	GGGAC	5 cut(s)	357, 1367, 1916, 2809, 3003
FatI	CATG	8 cut(s)	1182, 1204, 1632, 1698, 2001, 2478, 2971, 3094
FauI	CCCGC	2 cut(s)	2298, 2980
FauNDI	CATATG	1 cut(s)	787
FbaI	TGATCA	3 cut(s)	183, 562, 1882
FblI	GTMKAC	1 cut(s)	459
FokI	GGATG	4 cut(s)	2328, 2843, 2998, 3086
FriOI	GRGCYC	1 cut(s)	915
FspBI	CTAG	6 cut(s)	1398, 1814, 2016, 2112, 2231, 2600
GlaI	GCGC	1 cut(s)	1181
GsaI	CCCAGC	2 cut(s)	1754, 1858
GsuI	CTGGAG	4 cut(s)	495, 852, 2700, 2982
HapII	CCGG	3 cut(s)	352, 358, 2284
HgaI	GACGC	5 cut(s)	307, 430, 470, 2008, 2182
HhaI	GCGC	1 cut(s)	1182
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	8 cut(s)	1186, 1208, 1636, 1702, 2005, 2482, 2975, 3098
Hin6I	GCGC	1 cut(s)	1180
HinP1I	GCGC	1 cut(s)	1180
HincII	GTYRAC	6 cut(s)	121, 295, 1696, 1789, 2023, 3100
HindII	GTYRAC	6 cut(s)	121, 295, 1696, 1789, 2023, 3100
HindIII	AAGCTT	2 cut(s)	917, 2252
HpaII	CCGG	3 cut(s)	352, 358, 2284
HphI	GGTGA	2 cut(s)	806, 1783
HpyCH4IV	ACGT	4 cut(s)	38, 193, 2334, 2701
HpyF10VI	GCNNNNNNNGC	9 cut(s)	92, 141, 228, 270, 306, 315, 1856, 2231, 2387
HpySE526I	ACGT	4 cut(s)	38, 193, 2334, 2701
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	8 cut(s)	1186, 1208, 1636, 1702, 2005, 2482, 2975, 3098
HspAI	GCGC	1 cut(s)	1180
Ksp22I	TGATCA	3 cut(s)	183, 562, 1882
KspI	CCGCGG	1 cut(s)	2988
LguI	GCTCTTC	1 cut(s)	1968
LmnI	GCTCC	4 cut(s)	306, 1549, 2292, 2488
Lsp1109I	GCAGC	9 cut(s)	144, 285, 321, 712, 1078, 1580, 2168, 2390, 2410
LweI	GCATC	3 cut(s)	1555, 2680, 3038
MaeI	CTAG	6 cut(s)	1398, 1814, 2016, 2112, 2231, 2600
MaeII	ACGT	4 cut(s)	38, 193, 2334, 2701
MbiI	CCGCTC	1 cut(s)	2293
MflI	RGATCY	2 cut(s)	2145, 2602
MhlI	GDGCHC	4 cut(s)	915, 2748, 2838, 2903
MlsI	TGGCCA	2 cut(s)	1386, 2198
MluNI	TGGCCA	2 cut(s)	1386, 2198
MlyI	GAGTC	3 cut(s)	1288, 2149, 2439
MmeI	TCCRAC	7 cut(s)	259, 424, 1328, 1488, 2458, 2663, 2874
Mox20I	TGGCCA	2 cut(s)	1386, 2198
MscI	TGGCCA	2 cut(s)	1386, 2198
MslI	CAYNNNNRTG	4 cut(s)	615, 654, 1703, 2817
Msp20I	TGGCCA	2 cut(s)	1386, 2198
MspA1I	CMGCKG	3 cut(s)	952, 2381, 2987
MspCI	CTTAAG	1 cut(s)	940
MspI	CCGG	3 cut(s)	352, 358, 2284
MspR9I	CCNGG	9 cut(s)	173, 1133, 1388, 1605, 2124, 2203, 2718, 3000, 3104
Mva1269I	GAATGC	3 cut(s)	682, 1270, 1351
MvaI	CCWGG	9 cut(s)	173, 1133, 1388, 1605, 2124, 2203, 2718, 3000, 3104
MvnI	CGCG	2 cut(s)	164, 2987
MwoI	GCNNNNNNNGC	9 cut(s)	92, 141, 228, 270, 306, 315, 1856, 2231, 2387
NdeI	CATATG	1 cut(s)	787
NlaIII	CATG	8 cut(s)	1186, 1208, 1636, 1702, 2005, 2482, 2975, 3098
NmeAIII	GCCGAG	2 cut(s)	994, 2659
NmuCI	GTSAC	8 cut(s)	817, 889, 1291, 1771, 1802, 2170, 2210, 2777
NspI	RCATGY	2 cut(s)	1186, 3098
PaeI	GCATGC	1 cut(s)	1186
PasI	CCCWGGG	1 cut(s)	1132
PciSI	GCTCTTC	1 cut(s)	1968
PctI	GAATGC	3 cut(s)	682, 1270, 1351
PfeI	GAWTC	7 cut(s)	159, 324, 1006, 1024, 1810, 2413, 2498
PfoI	TCCNGGA	1 cut(s)	2716
PleI	GAGTC	3 cut(s)	1288, 2149, 2438
PpsI	GAGTC	3 cut(s)	1288, 2149, 2438
PpuMI	RGGWCCY	1 cut(s)	1136
Psp124BI	GAGCTC	1 cut(s)	915
Psp5II	RGGWCCY	1 cut(s)	1136
Psp6I	CCWGG	9 cut(s)	171, 1131, 1386, 1603, 2122, 2201, 2716, 2998, 3102
PspFI	CCCAGC	2 cut(s)	1750, 1854
PspGI	CCWGG	9 cut(s)	171, 1131, 1386, 1603, 2122, 2201, 2716, 2998, 3102
PspPI	GGNCC	7 cut(s)	1136, 1652, 1733, 1912, 2080, 2205, 2309
PspPPI	RGGWCCY	1 cut(s)	1136
PstI	CTGCAG	1 cut(s)	2777
PstNI	CAGNNNCTG	1 cut(s)	2723
PsuI	RGATCY	2 cut(s)	2145, 2602
PvuII	CAGCTG	2 cut(s)	952, 2381
RseI	CAYNNNNRTG	4 cut(s)	615, 654, 1703, 2817
SacI	GAGCTC	1 cut(s)	915
SacII	CCGCGG	1 cut(s)	2988
SapI	GCTCTTC	1 cut(s)	1968
Sau96I	GGNCC	7 cut(s)	1136, 1652, 1733, 1912, 2080, 2205, 2309
ScaI	AGTACT	2 cut(s)	640, 938
SchI	GAGTC	3 cut(s)	1288, 2149, 2439
ScrFI	CCNGG	9 cut(s)	173, 1133, 1388, 1605, 2124, 2203, 2718, 3000, 3104
SduI	GDGCHC	4 cut(s)	915, 2748, 2838, 2903
SfaNI	GCATC	3 cut(s)	1555, 2680, 3038
SfcI	CTRYAG	2 cut(s)	2773, 2953
Sfr303I	CCGCGG	1 cut(s)	2988
SgrBI	CCGCGG	1 cut(s)	2988
SinI	GGWCC	3 cut(s)	1136, 1652, 1912
SmiMI	CAYNNNNRTG	4 cut(s)	615, 654, 1703, 2817
SmlI	CTYRAG	2 cut(s)	914, 940
SmoI	CTYRAG	2 cut(s)	914, 940
SphI	GCATGC	1 cut(s)	1186
SspMI	CTAG	6 cut(s)	1398, 1814, 2016, 2112, 2231, 2600
SstI	GAGCTC	1 cut(s)	915
StyD4I	CCNGG	9 cut(s)	171, 1131, 1386, 1603, 2122, 2201, 2716, 2998, 3102
StyI	CCWWGG	2 cut(s)	1075, 2791
TaiI	ACGT	4 cut(s)	41, 196, 2337, 2704
TaqI	TCGA	3 cut(s)	66, 327, 2465
TatI	WGTACW	4 cut(s)	638, 936, 1449, 2931
TauI	GCSGC	7 cut(s)	132, 167, 222, 1038, 1668, 2351, 2671
TfiI	GAWTC	7 cut(s)	159, 324, 1006, 1024, 1810, 2413, 2498
TseFI	GTSAC	8 cut(s)	817, 889, 1291, 1771, 1802, 2170, 2210, 2777
TseI	GCWGC	9 cut(s)	132, 273, 309, 725, 1091, 1568, 2181, 2378, 2423
Tsp45I	GTSAC	8 cut(s)	817, 889, 1291, 1771, 1802, 2170, 2210, 2777
TspDTI	ATGAA	9 cut(s)	377, 725, 1013, 1163, 1221, 1715, 2004, 2604, 3112
TspGWI	ACGGA	2 cut(s)	510, 2995
Vha464I	CTTAAG	1 cut(s)	940
VneI	GTGCAC	2 cut(s)	2744, 2899
VpaK11BI	GGWCC	3 cut(s)	1136, 1652, 1912
XagI	CCTNNNNNAGG	2 cut(s)	1079, 2893
XapI	RAATTY	6 cut(s)	492, 764, 1055, 1219, 1511, 2467
XbaI	TCTAGA	1 cut(s)	2111
XceI	RCATGY	2 cut(s)	1186, 3098
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1851
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	6 cut(s)	1398, 1814, 2016, 2112, 2231, 2600
ZrmI	AGTACT	2 cut(s)	640, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.