Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007187

Physical Location & Seq

Genomic Coordinates Reverse (-)

14854991 .. 14859845

Gene Structure 4855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G012630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3159 bp

ATGGAAAGAGGAAGAGGCGGCGGTTACGGTGGCAGAGGAAACAACGGAGGAGAGAGAGGGAGAGGCGGTTATGGTAACAGAGGAGGGAGAGTTGGCGGTTATGCTGACGTGGTTTTCGGCGGTGGGAATGGCGGTCGAGGAGAGAGAGGAAGAGGCGGTTATGGCGGCGGTGGTGGTTACAACCGTCAACAACCGCCGCAGCAAGATCAGCAGTGGAATAATCAGAATCGCGGCCAGCCTGGGAGGTCTGATCAGCAAACGTGGAGGTCTTCTTCTTCTTCTCAGCCGCAAGATCAGCAGTCGGGGAGGTATTCGGCCTCTTCTCAACCGCAGGATCAGCAGCGTTGGAGGTCTTCTGGTCAACCGCCACAGGAGCAGCAGTGGCGTCAGAATCGAGGCCAGCCTCGGGGGACGTCTCCGGCACCGGCTCTGGCACCGTCTTCTTCTTCTTCTTCTTCATCTCCTTCTCCAACCAAGAACAGTCTTGCTGACGCTGTTGTTTCTGGAGTGCAATCACTGAAAATTTCAAAGCAGACATCTCCGCCATCTCCGTTGAACAGTGCAGACAAACTTCTACCTGTGAGACGACCTGATCAGGGAGGCACAAAGGCTGTCCAAACTGTTAGGCTTCGTGCTAATCACTTCAATGTCTCGTACAATCCTCAGAGTACTATAATGCACTATGATGTTAATGTCAAACCAGTGAATGCTACAAGGAATGGCAGACCAGTTAGAATTATGAAGTCTGATCTTGCTGCAATCAGAAACAAGTTGTCCTCTGATAATCCTTCAAAATTTCCATTATTGATGACTGCATATGATGGTGAGAAGAATATCTTTAGTGCTGTGACATTACCCACTGGAGAGTTTAAGGTGGAGGTTCCTGAGGAAGAAGGCACACGCATAAGTTCGTATATAGTCACTATAAAACTTGTAAATGAGCTCAAGCTTTGCAAGTTGAAGGAGTACTTAAGTGGTCAGCTGTTGTCTATCCCTCGTGATATATTGCAGGGAATGGATTTAGTGATGAAGGAGAATCCTACTCGGCGGTTGATTCCTGTTGGCCGCAACTTTTACCCTGCTGAATTTAATCCAGACGATGACCTTGGACAGGGTACTGCTGCATTTAGAGGGTTTCAGCATAGTTTAAGGCTCACTTCCCAGGGTCCTGCTATGTGTCTGGACTACTCAGTCTTGGCATTTCATAAGCGCATGCCAGTTATAGATTTTCTCCATGAAAAGATAAGGAATTTTACTTTAAATAATTTCAGGAGGTTTAAGAGAGATGTTGAGAATGCTTTAAGGGGATTGAAAGTTACTGTGACTCATCGTCCAACCAAGCAGAAGTATGTTATCAAGGGGCTAACTGATAGGAATGCAGGGGACATTACATTTGAAGCTGTTGATGTTGATGGCCAGGTTCCACCTAGAAGGCTTAGACTTGTTGATTATTTCAGAGACAAATACAAGGATATCAAGTACAAAGACATTCCCTGCTTAGATTTAGGGAAAAATGGTAGGAGGAATGATACACCGTTGGAATTTTGTGTCTTAGTTGAAGGGCAAAGATACCCTAAGGAGCAGTTGGGCAGAGATGCAGCCATTATGTTGAAGAACTTGTCATTGGTTACACCAGGGGTTAGAGAGAACAACATACGCAACATGGCACGGTCGGGAGATGGACCTTGTGGTGGCGGCATTATCCAGAACTTTGGAATTGAAGTCAACATGAATATGACACAAGTAACAGGGCGTGTCATTGGCCCACCTGAGTTGAAGCTGGGGGATTTTGGTGGCAAGGTGACTAAAGTAAAAGTTGACAATGAGAAATGTCACTGGAATCTAGTTGGCAAGTCATTAGTGGAAGGAAAACCAATAGCTCGCTGGGCTGTGCTTGACTTTAGCTGTTTTGATCAAGACTGTTATGATCGGGACAAACTGGACCCTTATCAATTTATCCCAAAGCTCATCACTCGGTGCAACAAATTGGGAATGAGAATGGAAGAGCCTCGCTTGTATGAAACCTCTTCCATGAGACCATTTTCTAGCGTCAACTTGCTTCGGGAACTGCTTGAAACTGTTAATGGGAAGGTACTTGAAGAAGGCAAGGGCCACTTACAACTACTTGTTTGTGTAATGTCTAGAAAAGACCCTGGTTACAAGTATCTGAAGTGGATCTGTGAGACTCAAATTGGTATAGTGACGCAGTGCTGCTTGTCAAAGATGGCCACCAGGCCCAGTGACCAGTTTCTTGCAAATCTTGCACTGAAGATCAATGCGAAGCTTGGAGGCAGTAATGTAGAGCTGATTGACCGGCTCCCGCTCTTTGAGGGTGCTGGCCCTGTTATGTTTGTGGGGGCTGACGTTAATCATCCTGCGGCTCGGAACACAACAAGTCCATCAATAGCAGCTGTGGTTGCCACTATAAACTGGCCTGCTGTGAATCGTTATGCTGCACGAGTCCGACCCCAGTACCATCGTACTGAGAGCATATCGAATTTTGGAGACATGGTTTTGGAGCTTGTTGAATCGTATTTTAGAATAAATAAAGTGAAGCCTGAAAAAATTGTTGTTTTCCGAGATGGTGTAAGTGAGGGGCAATTTGATATGGTTCTCAATGAAGAGTTGCTAGATCTGAAGAGGGCTTTGGGAACTATAAACTACTTTCCAACCATCACTCTGATTGTTGCTCAAAAGCGGCATCATACTCGGCTGTTTCAGGAGAATGGACGTTCCAATGTATCTCCAGGAACTGTTGTGGACACAAGGATTGTGCACCCATTTGAGTTTGACTTCTATCTCTGCAGTCACTATGGAAGCCTTGGGACAAGCAAGCCGACACACTACTATGTTCTTTGGGATGAGCACAGTTTTACTTCCGACCAGTTGCAGAAGCTCATATATGACTTGTGCTTTACCTTTGCAAGGTGCACGAAACCTGTCTCTTTGGTTCCGCCAGTGTACTATGCTGACCTTGTGGCCTACAGAGGGAGATTGTACCATGAGACTATGACCGCGGGACTGTCTCCAGGTTCCGTAACATCCTCCTCCTCCTCAGCATCATCATCATCGGCACCTTCAACACTGTCGGTGGGTTCTCTGGATGACAGGTTTTATAGATTGCATGTTGACCTGGAAAACATTATGTTTTTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0016032 GO:0019048 GO:0035197 GO:0035821 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0061980 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

1052

Amino Acids

117.27

Weight (kDa)

9.46

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	207 - 343	2.2e-23	N-terminal domain of argonaute
ArgoL1	PF08699	353 - 403	5.3e-11	Argonaute linker 1 domain
PAZ	PF02170	421 - 530	1.1e-21	PAZ domain
ArgoL2	PF16488	548 - 593	3.2e-07	Argonaute linker 2 domain
Piwi	PF02171	709 - 998	9.1e-93	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31280 AT1G31290 AT1G31290 AT1G31290
fragaria_vesca	FvH4_3g11980
malus_domestica	MD05G1256100.v1.1 MD10G1236300.v1.1 MD10G1236400.v1.1
prunus_persica	Prupe.4G108000_v2.0.a1 Prupe.4G108100_v2.0.a1
pyrus_communis	pycom05g23500 pycom05g23510 pycom05g23520 pycom10g19770 pycom10g19780
rosa_chinensis	RchiOBHm_Chr5g0019581
rosa_laevigata	RLG00000032457
rosa_roxburghii	Rroxscaffold_1G00058500
rosa_rugosa	Rorug05G0052100 Rorug05G0052200
rosa_samantha	Rh5AG142700 Rh5BG141200 Rh5CG153300 Rh5DG141900
rosa_wichuraiana	Rw5G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1190
AatII	GACGTC	1 cut(s)	416
AccB1I	GGYRCC	3 cut(s)	421, 433, 3073
AccBSI	CCGCTC	1 cut(s)	2323
AccII	CGCG	2 cut(s)	231, 3017
AclWI	GGATC	2 cut(s)	342, 2183
AcoI	YGGCCR	4 cut(s)	232, 1063, 1414, 2226
AcsI	RAATTY	6 cut(s)	522, 794, 1085, 1249, 1541, 2497
AcuI	CTGAAG	3 cut(s)	2189, 2288, 2657
AcyI	GRCGYC	2 cut(s)	385, 413
AdeI	CACNNNGTG	1 cut(s)	1977
AfiI	CCNNNNNNNGG	6 cut(s)	406, 596, 1111, 1691, 2925, 2988
AflII	CTTAAG	1 cut(s)	970
AhdI	GACNNNNNGTC	1 cut(s)	1329
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	9 cut(s)	238, 1161, 1416, 1633, 2152, 2231, 2746, 3028, 3132
AjuI	GAANNNNNNNTTGG	4 cut(s)	1607, 1639, 2630, 2662
Alw21I	GWGCWC	4 cut(s)	945, 2778, 2868, 2933
Alw44I	GTGCAC	2 cut(s)	2774, 2929
AlwI	GGATC	2 cut(s)	342, 2183
AlwNI	CAGNNNCTG	1 cut(s)	2753
Ama87I	CYCGRG	1 cut(s)	405
ApaLI	GTGCAC	2 cut(s)	2774, 2929
ApeKI	GCWGC	9 cut(s)	199, 340, 376, 755, 1121, 1598, 2211, 2408, 2453
ApoI	RAATTY	6 cut(s)	522, 794, 1085, 1249, 1541, 2497
ArsI	GACNNNNNNTTYG	4 cut(s)	98, 130, 1376, 1408
AspLEI	GCGC	1 cut(s)	1212
AspS9I	GGNCC	7 cut(s)	1166, 1682, 1763, 1942, 2110, 2235, 2339
AsuHPI	GGTGA	2 cut(s)	836, 1813
AvaI	CYCGRG	1 cut(s)	405
AvaII	GGWCC	3 cut(s)	1166, 1682, 1942
AxyI	CCTNAGG	2 cut(s)	885, 1575
BaeGI	GKGCMC	2 cut(s)	2778, 2933
BaeI	ACNNNNGTAYC	2 cut(s)	2456, 2489
BalI	TGGCCA	2 cut(s)	1416, 2228
BanI	GGYRCC	3 cut(s)	421, 433, 3073
BanII	GRGCYC	1 cut(s)	945
BauI	CACGAG	2 cut(s)	996, 2457
BbsI	GAAGAC	3 cut(s)	261, 345, 432
Bbv12I	GWGCWC	4 cut(s)	945, 2778, 2868, 2933
BbvCI	CCTCAGC	1 cut(s)	3055
BbvI	GCAGC	9 cut(s)	211, 352, 388, 742, 1108, 1610, 2198, 2420, 2440
BccI	CCATC	9 cut(s)	553, 815, 1406, 1673, 2218, 2407, 2484, 2576, 2681
BcgI	CGANNNNNNTGC	2 cut(s)	2690, 2724
BciT130I	CCWGG	9 cut(s)	240, 1163, 1418, 1635, 2154, 2233, 2748, 3030, 3134
BclI	TGATCA	3 cut(s)	250, 592, 1912
BfaI	CTAG	5 cut(s)	1428, 1844, 2046, 2142, 2630
BfmI	CTRYAG	2 cut(s)	2803, 2983
BfrI	CTTAAG	1 cut(s)	970
BglII	AGATCT	1 cut(s)	2632
BmcAI	AGTACT	2 cut(s)	670, 968
Bme1390I	CCNGG	9 cut(s)	240, 1163, 1418, 1635, 2154, 2233, 2748, 3030, 3134
Bme18I	GGWCC	3 cut(s)	1166, 1682, 1942
BmeRI	GACNNNNNGTC	1 cut(s)	1329
BmeT110I	CYCGRG	1 cut(s)	405
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	7 cut(s)	1166, 1682, 1763, 1942, 2110, 2235, 2339
BmrFI	CCNGG	9 cut(s)	240, 1163, 1418, 1635, 2154, 2233, 2748, 3030, 3134
BmrI	ACTGGG	2 cut(s)	2232, 2464
BmsI	GCATC	3 cut(s)	1585, 2710, 3068
BmuI	ACTGGG	2 cut(s)	2232, 2464
BpiI	GAAGAC	3 cut(s)	261, 345, 432
BpmI	CTGGAG	4 cut(s)	525, 882, 2730, 3012
Bpu10I	CCTNAGC	1 cut(s)	3055
BpuEI	CTTGAG	1 cut(s)	929
BsaHI	GRCGYC	2 cut(s)	385, 413
BsaI	GGTCTC	1 cut(s)	2029
BsaJI	CCNNGG	9 cut(s)	239, 404, 1105, 1161, 1162, 1634, 2152, 2821, 3015
BsaXI	ACNNNNNCTCC	8 cut(s)	52, 75, 82, 105, 365, 395, 2496, 2526
Bsc4I	CCNNNNNNNGG	6 cut(s)	406, 596, 1111, 1691, 2925, 2988
Bse118I	RCCGGY	2 cut(s)	424, 2313
Bse21I	CCTNAGG	2 cut(s)	885, 1575
BseBI	CCWGG	9 cut(s)	240, 1163, 1418, 1635, 2154, 2233, 2748, 3030, 3134
BseDI	CCNNGG	9 cut(s)	239, 404, 1105, 1161, 1162, 1634, 2152, 2821, 3015
BseGI	GGATG	4 cut(s)	2371, 2866, 3041, 3109
BseLI	CCNNNNNNNGG	6 cut(s)	406, 596, 1111, 1691, 2925, 2988
BseMII	CTCAG	7 cut(s)	296, 677, 876, 1203, 1761, 2475, 3069
BseRI	GAGGAG	6 cut(s)	63, 96, 153, 3037, 3040, 3043
BseSI	GKGCMC	2 cut(s)	2778, 2933
BseXI	GCAGC	9 cut(s)	211, 352, 388, 742, 1108, 1610, 2198, 2420, 2440
BseYI	CCCAGC	2 cut(s)	1780, 1884
BsgI	GTGCAG	2 cut(s)	582, 2439
Bsh1236I	CGCG	2 cut(s)	231, 3017
Bsh1285I	CGRYCG	2 cut(s)	136, 1673
BshNI	GGYRCC	3 cut(s)	421, 433, 3073
BsiEI	CGRYCG	2 cut(s)	136, 1673
BsiHKAI	GWGCWC	4 cut(s)	945, 2778, 2868, 2933
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	3 cut(s)	419, 425, 2314
BslFI	GGGAC	5 cut(s)	424, 1397, 1946, 2839, 3033
BslI	CCNNNNNNNGG	6 cut(s)	406, 596, 1111, 1691, 2925, 2988
BsmBI	CGTCTC	2 cut(s)	420, 577
BsmFI	GGGAC	5 cut(s)	424, 1397, 1946, 2839, 3033
BsmI	GAATGC	3 cut(s)	712, 1300, 1381
Bso31I	GGTCTC	1 cut(s)	2029
BsoBI	CYCGRG	1 cut(s)	405
Bsp1286I	GDGCHC	4 cut(s)	945, 2778, 2868, 2933
BspCNI	CTCAG	7 cut(s)	295, 676, 877, 1202, 1762, 2476, 3068
BspFNI	CGCG	2 cut(s)	231, 3017
BspMAI	CTGCAG	1 cut(s)	2807
BspPI	GGATC	2 cut(s)	342, 2183
BspQI	GCTCTTC	1 cut(s)	1998
BspT107I	GGYRCC	3 cut(s)	421, 433, 3073
BspTI	CTTAAG	1 cut(s)	970
BspTNI	GGTCTC	1 cut(s)	2029
BsrBI	CCGCTC	1 cut(s)	2323
BsrFI	RCCGGY	2 cut(s)	424, 2313
BssAI	RCCGGY	2 cut(s)	424, 2313
BssECI	CCNNGG	9 cut(s)	239, 404, 1105, 1161, 1162, 1634, 2152, 2821, 3015
BssNI	GRCGYC	2 cut(s)	385, 413
BssSI	CACGAG	2 cut(s)	996, 2457
BssT1I	CCWWGG	2 cut(s)	1105, 2821
Bst2BI	CACGAG	2 cut(s)	996, 2457
Bst2UI	CCWGG	9 cut(s)	240, 1163, 1418, 1635, 2154, 2233, 2748, 3030, 3134
Bst6I	CTCTTC	7 cut(s)	7, 145, 325, 1998, 2032, 2616, 2633
BstACI	GRCGYC	2 cut(s)	385, 413
BstAFI	CTTAAG	1 cut(s)	970
BstAPI	GCANNNNNTGC	1 cut(s)	2261
BstC8I	GCNNGC	7 cut(s)	236, 401, 1214, 1882, 2338, 2436, 2834
BstDSI	CCRYGG	1 cut(s)	3015
BstENI	CCTNNNNNAGG	2 cut(s)	1109, 2923
BstF5I	GGATG	4 cut(s)	2371, 2866, 3041, 3109
BstFNI	CGCG	2 cut(s)	231, 3017
BstHHI	GCGC	1 cut(s)	1212
BstMCI	CGRYCG	2 cut(s)	136, 1673
BstMWI	GCNNNNNNNGC	9 cut(s)	162, 208, 295, 337, 373, 382, 1886, 2261, 2417
BstNI	CCWGG	9 cut(s)	240, 1163, 1418, 1635, 2154, 2233, 2748, 3030, 3134
BstNSI	RCATGY	2 cut(s)	1216, 3128
BstSCI	CCNGG	9 cut(s)	238, 1161, 1416, 1633, 2152, 2231, 2746, 3028, 3132
BstSFI	CTRYAG	2 cut(s)	2803, 2983
BstSLI	GKGCMC	2 cut(s)	2778, 2933
BstUI	CGCG	2 cut(s)	231, 3017
BstV1I	GCAGC	9 cut(s)	211, 352, 388, 742, 1108, 1610, 2198, 2420, 2440
BstV2I	GAAGAC	3 cut(s)	261, 345, 432
BstX2I	RGATCY	2 cut(s)	2175, 2632
BstXI	CCANNNNNNTGG	1 cut(s)	1712
BstYI	RGATCY	2 cut(s)	2175, 2632
Bsu36I	CCTNAGG	2 cut(s)	885, 1575
BtgI	CCRYGG	1 cut(s)	3015
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	4 cut(s)	2371, 2866, 3041, 3109
BtsI	GCAGTG	3 cut(s)	218, 386, 2213
Cac8I	GCNNGC	7 cut(s)	236, 401, 1214, 1882, 2338, 2436, 2834
CaiI	CAGNNNCTG	1 cut(s)	2753
CfoI	GCGC	1 cut(s)	1212
Cfr10I	RCCGGY	2 cut(s)	424, 2313
Cfr13I	GGNCC	7 cut(s)	1166, 1682, 1763, 1942, 2110, 2235, 2339
Cfr42I	CCGCGG	1 cut(s)	3018
CseI	GACGC	4 cut(s)	374, 500, 2038, 2212
CspCI	CAANNNNNGTGG	2 cut(s)	1755, 1790
CviAII	CATG	8 cut(s)	1213, 1235, 1663, 1729, 2032, 2509, 3002, 3125
DraI	TTTAAA	1 cut(s)	1260
DraIII	CACNNNGTG	1 cut(s)	1977
DrdI	GACNNNNNNGTC	1 cut(s)	1190
DriI	GACNNNNNGTC	1 cut(s)	1329
DseDI	GACNNNNNNGTC	1 cut(s)	1190
EaeI	YGGCCR	4 cut(s)	232, 1063, 1414, 2226
Eam1104I	CTCTTC	7 cut(s)	7, 145, 325, 1998, 2032, 2616, 2633
Eam1105I	GACNNNNNGTC	1 cut(s)	1329
EarI	CTCTTC	7 cut(s)	7, 145, 325, 1998, 2032, 2616, 2633
EciI	GGCGGA	2 cut(s)	531, 2943
Ecl136II	GAGCTC	1 cut(s)	943
Eco130I	CCWWGG	2 cut(s)	1105, 2821
Eco24I	GRGCYC	1 cut(s)	945
Eco31I	GGTCTC	1 cut(s)	2029
Eco32I	GATATC	1 cut(s)	1474
Eco47I	GGWCC	3 cut(s)	1166, 1682, 1942
Eco53kI	GAGCTC	1 cut(s)	943
Eco57I	CTGAAG	3 cut(s)	2189, 2288, 2657
Eco81I	CCTNAGG	2 cut(s)	885, 1575
Eco88I	CYCGRG	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	943
EcoNI	CCTNNNNNAGG	2 cut(s)	1109, 2923
EcoO109I	RGGNCCY	1 cut(s)	1166
EcoRII	CCWGG	9 cut(s)	238, 1161, 1416, 1633, 2152, 2231, 2746, 3028, 3132
EcoRV	GATATC	1 cut(s)	1474
EcoT14I	CCWWGG	2 cut(s)	1105, 2821
EcoT38I	GRGCYC	1 cut(s)	945
ErhI	CCWWGG	2 cut(s)	1105, 2821
Esp3I	CGTCTC	2 cut(s)	420, 577
FaeI	CATG	8 cut(s)	1216, 1238, 1666, 1732, 2035, 2512, 3005, 3128
FalI	AAGNNNNNCTT	8 cut(s)	821, 853, 953, 985, 1141, 1173, 2099, 2131
FaqI	GGGAC	5 cut(s)	424, 1397, 1946, 2839, 3033
FatI	CATG	8 cut(s)	1212, 1234, 1662, 1728, 2031, 2508, 3001, 3124
FauI	CCCGC	2 cut(s)	2328, 3010
FauNDI	CATATG	1 cut(s)	817
FbaI	TGATCA	3 cut(s)	250, 592, 1912
FokI	GGATG	4 cut(s)	2358, 2873, 3028, 3116
FriOI	GRGCYC	1 cut(s)	945
FspBI	CTAG	5 cut(s)	1428, 1844, 2046, 2142, 2630
GlaI	GCGC	1 cut(s)	1211
GsaI	CCCAGC	2 cut(s)	1784, 1888
GsuI	CTGGAG	4 cut(s)	525, 882, 2730, 3012
HapII	CCGG	3 cut(s)	419, 425, 2314
HgaI	GACGC	4 cut(s)	374, 500, 2038, 2212
HhaI	GCGC	1 cut(s)	1212
Hin1I	GRCGYC	2 cut(s)	385, 413
Hin1II	CATG	8 cut(s)	1216, 1238, 1666, 1732, 2035, 2512, 3005, 3128
Hin6I	GCGC	1 cut(s)	1210
HinP1I	GCGC	1 cut(s)	1210
HincII	GTYRAC	6 cut(s)	188, 362, 1726, 1819, 2053, 3130
HindII	GTYRAC	6 cut(s)	188, 362, 1726, 1819, 2053, 3130
HindIII	AAGCTT	2 cut(s)	947, 2282
HpaII	CCGG	3 cut(s)	419, 425, 2314
HphI	GGTGA	2 cut(s)	836, 1813
HpyCH4IV	ACGT	5 cut(s)	108, 260, 413, 2364, 2731
HpyF10VI	GCNNNNNNNGC	9 cut(s)	162, 208, 295, 337, 373, 382, 1886, 2261, 2417
HpySE526I	ACGT	5 cut(s)	108, 260, 413, 2364, 2731
Hsp92I	GRCGYC	2 cut(s)	385, 413
Hsp92II	CATG	8 cut(s)	1216, 1238, 1666, 1732, 2035, 2512, 3005, 3128
HspAI	GCGC	1 cut(s)	1210
Ksp22I	TGATCA	3 cut(s)	250, 592, 1912
KspI	CCGCGG	1 cut(s)	3018
LguI	GCTCTTC	1 cut(s)	1998
LmnI	GCTCC	4 cut(s)	373, 1579, 2322, 2518
Lsp1109I	GCAGC	9 cut(s)	211, 352, 388, 742, 1108, 1610, 2198, 2420, 2440
LweI	GCATC	3 cut(s)	1585, 2710, 3068
MaeI	CTAG	5 cut(s)	1428, 1844, 2046, 2142, 2630
MaeII	ACGT	5 cut(s)	108, 260, 413, 2364, 2731
MbiI	CCGCTC	1 cut(s)	2323
MflI	RGATCY	2 cut(s)	2175, 2632
MhlI	GDGCHC	4 cut(s)	945, 2778, 2868, 2933
MlsI	TGGCCA	2 cut(s)	1416, 2228
MluNI	TGGCCA	2 cut(s)	1416, 2228
MlyI	GAGTC	3 cut(s)	1318, 2179, 2469
MmeI	TCCRAC	7 cut(s)	326, 494, 1358, 1518, 2488, 2693, 2904
Mox20I	TGGCCA	2 cut(s)	1416, 2228
MscI	TGGCCA	2 cut(s)	1416, 2228
MslI	CAYNNNNRTG	4 cut(s)	645, 684, 1733, 2847
Msp20I	TGGCCA	2 cut(s)	1416, 2228
MspA1I	CMGCKG	3 cut(s)	982, 2411, 3017
MspCI	CTTAAG	1 cut(s)	970
MspI	CCGG	3 cut(s)	419, 425, 2314
MspR9I	CCNGG	9 cut(s)	240, 1163, 1418, 1635, 2154, 2233, 2748, 3030, 3134
Mva1269I	GAATGC	3 cut(s)	712, 1300, 1381
MvaI	CCWGG	9 cut(s)	240, 1163, 1418, 1635, 2154, 2233, 2748, 3030, 3134
MvnI	CGCG	2 cut(s)	231, 3017
MwoI	GCNNNNNNNGC	9 cut(s)	162, 208, 295, 337, 373, 382, 1886, 2261, 2417
NdeI	CATATG	1 cut(s)	817
NlaIII	CATG	8 cut(s)	1216, 1238, 1666, 1732, 2035, 2512, 3005, 3128
NmeAIII	GCCGAG	2 cut(s)	1024, 2689
NmuCI	GTSAC	8 cut(s)	847, 919, 1321, 1801, 1832, 2200, 2240, 2807
NspI	RCATGY	2 cut(s)	1216, 3128
PaeI	GCATGC	1 cut(s)	1216
PasI	CCCWGGG	1 cut(s)	1162
PciSI	GCTCTTC	1 cut(s)	1998
PctI	GAATGC	3 cut(s)	712, 1300, 1381
PfeI	GAWTC	7 cut(s)	226, 391, 1036, 1054, 1840, 2443, 2528
PfoI	TCCNGGA	1 cut(s)	2746
PleI	GAGTC	3 cut(s)	1318, 2179, 2468
PpsI	GAGTC	3 cut(s)	1318, 2179, 2468
PpuMI	RGGWCCY	1 cut(s)	1166
Psp124BI	GAGCTC	1 cut(s)	945
Psp5II	RGGWCCY	1 cut(s)	1166
Psp6I	CCWGG	9 cut(s)	238, 1161, 1416, 1633, 2152, 2231, 2746, 3028, 3132
PspFI	CCCAGC	2 cut(s)	1780, 1884
PspGI	CCWGG	9 cut(s)	238, 1161, 1416, 1633, 2152, 2231, 2746, 3028, 3132
PspPI	GGNCC	7 cut(s)	1166, 1682, 1763, 1942, 2110, 2235, 2339
PspPPI	RGGWCCY	1 cut(s)	1166
PstI	CTGCAG	1 cut(s)	2807
PstNI	CAGNNNCTG	1 cut(s)	2753
PsuI	RGATCY	2 cut(s)	2175, 2632
PvuII	CAGCTG	2 cut(s)	982, 2411
RseI	CAYNNNNRTG	4 cut(s)	645, 684, 1733, 2847
SacI	GAGCTC	1 cut(s)	945
SacII	CCGCGG	1 cut(s)	3018
SapI	GCTCTTC	1 cut(s)	1998
Sau96I	GGNCC	7 cut(s)	1166, 1682, 1763, 1942, 2110, 2235, 2339
ScaI	AGTACT	2 cut(s)	670, 968
SchI	GAGTC	3 cut(s)	1318, 2179, 2469
ScrFI	CCNGG	9 cut(s)	240, 1163, 1418, 1635, 2154, 2233, 2748, 3030, 3134
SduI	GDGCHC	4 cut(s)	945, 2778, 2868, 2933
SfaNI	GCATC	3 cut(s)	1585, 2710, 3068
SfcI	CTRYAG	2 cut(s)	2803, 2983
Sfr303I	CCGCGG	1 cut(s)	3018
SgrBI	CCGCGG	1 cut(s)	3018
SinI	GGWCC	3 cut(s)	1166, 1682, 1942
SmiMI	CAYNNNNRTG	4 cut(s)	645, 684, 1733, 2847
SmlI	CTYRAG	2 cut(s)	944, 970
SmoI	CTYRAG	2 cut(s)	944, 970
SphI	GCATGC	1 cut(s)	1216
SspMI	CTAG	5 cut(s)	1428, 1844, 2046, 2142, 2630
SstI	GAGCTC	1 cut(s)	945
StyD4I	CCNGG	9 cut(s)	238, 1161, 1416, 1633, 2152, 2231, 2746, 3028, 3132
StyI	CCWWGG	2 cut(s)	1105, 2821
TaiI	ACGT	5 cut(s)	111, 263, 416, 2367, 2734
TaqI	TCGA	3 cut(s)	136, 394, 2495
TatI	WGTACW	4 cut(s)	668, 966, 1479, 2961
TauI	GCSGC	9 cut(s)	21, 168, 199, 234, 289, 1068, 1698, 2381, 2701
TfiI	GAWTC	7 cut(s)	226, 391, 1036, 1054, 1840, 2443, 2528
TseFI	GTSAC	8 cut(s)	847, 919, 1321, 1801, 1832, 2200, 2240, 2807
TseI	GCWGC	9 cut(s)	199, 340, 376, 755, 1121, 1598, 2211, 2408, 2453
Tsp45I	GTSAC	8 cut(s)	847, 919, 1321, 1801, 1832, 2200, 2240, 2807
TspDTI	ATGAA	9 cut(s)	447, 755, 1043, 1193, 1251, 1745, 2034, 2634, 3142
TspGWI	ACGGA	3 cut(s)	60, 540, 3025
Vha464I	CTTAAG	1 cut(s)	970
VneI	GTGCAC	2 cut(s)	2774, 2929
VpaK11BI	GGWCC	3 cut(s)	1166, 1682, 1942
XagI	CCTNNNNNAGG	2 cut(s)	1109, 2923
XapI	RAATTY	6 cut(s)	522, 794, 1085, 1249, 1541, 2497
XbaI	TCTAGA	1 cut(s)	2141
XceI	RCATGY	2 cut(s)	1216, 3128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1881
XspI	CTAG	5 cut(s)	1428, 1844, 2046, 2142, 2630
ZraI	GACGTC	1 cut(s)	414
ZrmI	AGTACT	2 cut(s)	670, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.