Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007792

Physical Location & Seq

Genomic Coordinates Reverse (-)

13115824 .. 13117235

Gene Structure 1412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G35560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGTCCCACAACAACAACCAGAGCAACAACAACACCACTGGTTCGGCCCATCTGGTCCCATCCATGGGACCAATCTCCGGTTCAGTCTCATTAACCACCACTGCTCCAAACTCCACTACCACCACCGTCACCGCCGCTAAAACACCCGCAAAACGACCGTCCAAGGACCGTCACATCAAAGTAGACGGACGTGGCCGGAGGATACGTATGCCGGCTATCTGCGCAGCACGTGTCTTCCAACTAACACGTGAGTTACAACACAAATCGGACGGCGAGACTATAGAGTGGCTGCTCCAACAAGCGGAGCCAGCTATCATCGCAGCCACCGGAACTGGAACCATACCGGCGAATATCTCTACTTTGAACATCTCTCTTCGAAGCAGTGGCTCTACTCTTTCAGCTCCACTGTCTAAATCTTTCCACATGGGAAGAGCGGCTCAAAACGCTGCCGTTTTTGGGTTCCAGCAACAGCTTTATCATCCTCATCATATCACGACAGATTCTTCTTCTTCTTCTCTTCCCAAAACATTCCGTGAAGAAGATCTTTTTAAAGATCCTAATTTTCTAGATCAAGAACCCGGTTCAAGATCACCTAAACCGGGATCCGAAGCTCCTGATCAAGATCCGGGTTCGACCCGGTCAAGAACACAAAATATGATACCGCCGATGTGGGCACTAGCGCCAACGCCAGCCTCCACAAACGGAGGTAGTGCTTTTTGGATGTTACCAGTCGGAGGAGGAGGAGGTCCGGCTAACGTTCAGGATCCATCACAGCACATGTGGGCGTTTAATCCGGGTCATTACCCGGGTCGAATCGGGTCGGTTCAGCTAGGGTCTATGTTAGTGGGAGGTCAACAGTTAGGGTTAGGTGTTGCAGAAAATAACAATTTGGGGCTATTTTCCGGCGGAGGAGGAGACGGTGGTCGGGTTGGTCTCGGAATGAGTCTTGAGCAAAAGCCTCAACATCAAGTGAGTGATCATGCTACTAGAGACCAAAATCCTACTATAGATGGTTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

341

Amino Acids

35.95

Weight (kDa)

8.76

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	55 - 150	2.4e-30	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35560 AT1G72010 AT3G45150 AT3G47620 AT5G08330 AT5G23280 AT5G41030
fragaria_vesca	FvH4_4g06720
malus_domestica	MD13G1238400.v1.1 MD16G1243300.v1.1
prunus_persica	Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1
pyrus_communis	pycom13g21080 pycom16g20410
rosa_chinensis	RchiOBHm_Chr4g0398661
rosa_laevigata	RLG00000009336
rosa_multiflora	Rmu_co8332803.1_g000001
rosa_rugosa	Rorug04G0010200
rosa_samantha	Rh4AG088200 Rh4BG084800 Rh4CG096400 Rh4DG079600
rosa_wichuraiana	Rw4G007310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	226
AccBSI	CCGCTC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	7 cut(s)	135, 138, 150, 305, 437, 665, 909
AclI	AACGTT	1 cut(s)	759
AclWI	GGATC	6 cut(s)	551, 600, 613, 620, 761, 774
AcoI	YGGCCR	1 cut(s)	196
AcvI	CACGTG	2 cut(s)	233, 251
AfiI	CCNNNNNNNGG	7 cut(s)	67, 68, 80, 304, 459, 602, 737
AflIII	ACRYGT	3 cut(s)	232, 248, 780
AgsI	TTSAA	2 cut(s)	367, 588
AjiI	CACGTC	1 cut(s)	194
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AluBI	AGCT	5 cut(s)	314, 404, 475, 614, 832
AluI	AGCT	5 cut(s)	314, 404, 475, 614, 832
Alw26I	GTCTC	5 cut(s)	94, 272, 912, 941, 987
AlwI	GGATC	6 cut(s)	551, 600, 613, 620, 761, 774
Ama87I	CYCGRG	1 cut(s)	808
AoxI	GGCC	2 cut(s)	48, 196
ApeKI	GCWGC	4 cut(s)	227, 292, 323, 449
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	2 cut(s)	227, 685
AspS9I	GGNCC	5 cut(s)	49, 58, 71, 169, 749
AsuC2I	CCSGG	7 cut(s)	582, 603, 630, 640, 798, 809, 810
AsuHPI	GGTGA	2 cut(s)	124, 585
AsuII	TTCGAA	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	808
AvaII	GGWCC	4 cut(s)	58, 71, 169, 749
BaeGI	GKGCMC	1 cut(s)	679
BamHI	GGATCC	2 cut(s)	605, 766
BbrPI	CACGTG	2 cut(s)	233, 251
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	4 cut(s)	239, 279, 335, 436
BccI	CCATC	4 cut(s)	60, 70, 778, 1007
BceAI	ACGGC	2 cut(s)	289, 437
BciVI	GTATCC	1 cut(s)	198
BclI	TGATCA	2 cut(s)	619, 979
BcnI	CCSGG	7 cut(s)	582, 603, 630, 640, 798, 809, 810
BcoDI	GTCTC	5 cut(s)	94, 272, 912, 941, 987
BfaI	CTAG	4 cut(s)	569, 680, 833, 990
BfmI	CTRYAG	2 cut(s)	282, 1008
BfoI	RGCGCY	1 cut(s)	686
BfuI	GTATCC	1 cut(s)	198
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	6 cut(s)	138, 228, 293, 324, 438, 450
BlsI	GCNGC	6 cut(s)	139, 229, 294, 325, 439, 451
Bme1390I	CCNGG	7 cut(s)	582, 603, 630, 640, 798, 809, 810
Bme18I	GGWCC	4 cut(s)	58, 71, 169, 749
BmeT110I	CYCGRG	1 cut(s)	808
BmgBI	CACGTC	1 cut(s)	194
BmgT120I	GGNCC	5 cut(s)	49, 58, 71, 169, 749
BmiI	GGNNCC	7 cut(s)	60, 72, 309, 340, 464, 607, 768
BmrFI	CCNGG	7 cut(s)	582, 603, 630, 640, 798, 809, 810
BoxI	GACNNNNGTC	1 cut(s)	924
BpiI	GAAGAC	1 cut(s)	229
Bpu14I	TTCGAA	1 cut(s)	379
BpuEI	CTTGAG	1 cut(s)	971
BpuMI	CCSGG	7 cut(s)	582, 603, 630, 640, 798, 809, 810
BsaAI	YACGTR	3 cut(s)	209, 233, 251
BsaBI	GATNNNNATC	1 cut(s)	624
BsaI	GGTCTC	2 cut(s)	941, 987
BsaJI	CCNNGG	3 cut(s)	66, 165, 808
BsaWI	WCCGGW	2 cut(s)	80, 329
BsaXI	ACNNNNNCTCC	4 cut(s)	91, 121, 193, 223
Bsc4I	CCNNNNNNNGG	7 cut(s)	67, 68, 80, 304, 459, 602, 737
Bse118I	RCCGGY	2 cut(s)	214, 346
Bse1I	ACTGG	3 cut(s)	46, 340, 731
Bse8I	GATNNNNATC	1 cut(s)	624
BseDI	CCNNGG	3 cut(s)	66, 165, 808
BseGI	GGATG	3 cut(s)	62, 481, 729
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	7 cut(s)	67, 68, 80, 304, 459, 602, 737
BseNI	ACTGG	3 cut(s)	46, 340, 731
BseRI	GAGGAG	5 cut(s)	753, 756, 759, 927, 930
BseSI	GKGCMC	1 cut(s)	679
BseXI	GCAGC	4 cut(s)	239, 279, 335, 436
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	50, 198
BsiEI	CGRYCG	1 cut(s)	161
BsiHKCI	CYCGRG	1 cut(s)	808
BslFI	GGGAC	2 cut(s)	44, 84
BslI	CCNNNNNNNGG	7 cut(s)	67, 68, 80, 304, 459, 602, 737
BsmAI	GTCTC	5 cut(s)	94, 272, 912, 941, 987
BsmBI	CGTCTC	1 cut(s)	912
BsmFI	GGGAC	2 cut(s)	44, 84
BsnI	GGCC	2 cut(s)	50, 198
Bso31I	GGTCTC	2 cut(s)	941, 987
BsoBI	CYCGRG	1 cut(s)	808
Bsp119I	TTCGAA	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	9 cut(s)	544, 556, 571, 590, 605, 619, 625, 766, 979
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	7 cut(s)	135, 138, 150, 305, 437, 665, 909
BspANI	GGCC	2 cut(s)	50, 198
BspLI	GGNNCC	7 cut(s)	60, 72, 309, 340, 464, 607, 768
BspPI	GGATC	6 cut(s)	551, 600, 613, 620, 761, 774
BspQI	GCTCTTC	1 cut(s)	427
BspT104I	TTCGAA	1 cut(s)	379
BspTNI	GGTCTC	2 cut(s)	941, 987
BsrBI	CCGCTC	1 cut(s)	437
BsrFI	RCCGGY	2 cut(s)	214, 346
BsrI	ACTGG	3 cut(s)	46, 340, 731
BssAI	RCCGGY	2 cut(s)	214, 346
BssECI	CCNNGG	3 cut(s)	66, 165, 808
BssMI	GATC	9 cut(s)	544, 556, 571, 590, 605, 619, 625, 766, 979
BssT1I	CCWWGG	2 cut(s)	66, 165
Bst4CI	ACNGT	6 cut(s)	130, 162, 173, 411, 861, 923
Bst6I	CTCTTC	3 cut(s)	381, 427, 525
BstBAI	YACGTR	3 cut(s)	209, 233, 251
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	3 cut(s)	216, 312, 693
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	3 cut(s)	62, 481, 729
BstH2I	RGCGCY	1 cut(s)	686
BstHHI	GCGC	2 cut(s)	227, 685
BstKTI	GATC	9 cut(s)	547, 559, 574, 593, 608, 622, 628, 769, 982
BstMAI	GTCTC	5 cut(s)	94, 272, 912, 941, 987
BstMBI	GATC	9 cut(s)	544, 556, 571, 590, 605, 619, 625, 766, 979
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 311, 320, 446
BstNSI	RCATGY	1 cut(s)	784
BstPAI	GACNNNNGTC	1 cut(s)	924
BstSCI	CCNGG	7 cut(s)	580, 601, 628, 638, 796, 807, 808
BstSFI	CTRYAG	2 cut(s)	282, 1008
BstSLI	GKGCMC	1 cut(s)	679
BstSNI	TACGTA	1 cut(s)	209
BstV1I	GCAGC	4 cut(s)	239, 279, 335, 436
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	5 cut(s)	544, 556, 605, 625, 766
BstYI	RGATCY	5 cut(s)	544, 556, 605, 625, 766
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	50, 198
BtgI	CCRYGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	304
BtrI	CACGTC	1 cut(s)	194
BtsCI	GGATG	3 cut(s)	62, 481, 729
BtsI	GCAGTG	2 cut(s)	102, 391
BtsIMutI	CAGTG	4 cut(s)	39, 102, 391, 407
Cac8I	GCNNGC	3 cut(s)	216, 312, 693
CfoI	GCGC	2 cut(s)	227, 685
Cfr10I	RCCGGY	2 cut(s)	214, 346
Cfr13I	GGNCC	5 cut(s)	49, 58, 71, 169, 749
Cfr9I	CCCGGG	1 cut(s)	808
CviAII	CATG	4 cut(s)	67, 427, 781, 983
DpnI	GATC	9 cut(s)	546, 558, 573, 592, 607, 621, 627, 768, 981
DpnII	GATC	9 cut(s)	544, 556, 571, 590, 605, 619, 625, 766, 979
DraI	TTTAAA	1 cut(s)	553
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	3 cut(s)	381, 427, 525
EarI	CTCTTC	3 cut(s)	381, 427, 525
EciI	GGCGGA	1 cut(s)	924
Eco105I	TACGTA	1 cut(s)	209
Eco130I	CCWWGG	2 cut(s)	66, 165
Eco31I	GGTCTC	2 cut(s)	941, 987
Eco47I	GGWCC	4 cut(s)	58, 71, 169, 749
Eco72I	CACGTG	2 cut(s)	233, 251
Eco88I	CYCGRG	1 cut(s)	808
EcoT14I	CCWWGG	2 cut(s)	66, 165
ErhI	CCWWGG	2 cut(s)	66, 165
Esp3I	CGTCTC	1 cut(s)	912
FaeI	CATG	4 cut(s)	70, 430, 784, 986
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	2 cut(s)	44, 84
FatI	CATG	4 cut(s)	66, 426, 780, 982
FauI	CCCGC	1 cut(s)	157
FbaI	TGATCA	2 cut(s)	619, 979
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	6 cut(s)	138, 228, 293, 324, 438, 450
FokI	GGATG	3 cut(s)	49, 468, 736
Fsp4HI	GCNGC	6 cut(s)	138, 228, 293, 324, 438, 450
FspBI	CTAG	4 cut(s)	569, 680, 833, 990
FspI	TGCGCA	1 cut(s)	226
GlaI	GCGC	2 cut(s)	226, 684
GluI	GCNGC	6 cut(s)	138, 228, 293, 324, 438, 450
HaeII	RGCGCY	1 cut(s)	686
HaeIII	GGCC	2 cut(s)	50, 198
HhaI	GCGC	2 cut(s)	227, 685
Hin1II	CATG	4 cut(s)	70, 430, 784, 986
Hin6I	GCGC	2 cut(s)	225, 683
HinP1I	GCGC	2 cut(s)	225, 683
HincII	GTYRAC	1 cut(s)	857
HindII	GTYRAC	1 cut(s)	857
HinfI	GANTC	4 cut(s)	5, 503, 816, 946
HphI	GGTGA	2 cut(s)	124, 585
Hpy166II	GTNNAC	2 cut(s)	187, 857
Hpy188I	TCNGA	4 cut(s)	271, 610, 737, 941
Hpy188III	TCNNGA	9 cut(s)	496, 569, 575, 588, 617, 623, 645, 764, 950
Hpy8I	GTNNAC	2 cut(s)	187, 857
HpyCH4III	ACNGT	6 cut(s)	130, 162, 173, 411, 861, 923
HpyCH4IV	ACGT	5 cut(s)	193, 208, 232, 250, 759
HpyCH4V	TGCA	1 cut(s)	878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 311, 320, 446
HpySE526I	ACGT	5 cut(s)	193, 208, 232, 250, 759
Hsp92II	CATG	4 cut(s)	70, 430, 784, 986
HspAI	GCGC	2 cut(s)	225, 683
KroI	GCCGGC	1 cut(s)	214
KroNI	GCCGGC	1 cut(s)	216
Ksp22I	TGATCA	2 cut(s)	619, 979
Kzo9I	GATC	9 cut(s)	544, 556, 571, 590, 605, 619, 625, 766, 979
LguI	GCTCTTC	1 cut(s)	427
LmnI	GCTCC	5 cut(s)	112, 300, 307, 409, 619
Lsp1109I	GCAGC	4 cut(s)	239, 279, 335, 436
MaeI	CTAG	4 cut(s)	569, 680, 833, 990
MaeII	ACGT	5 cut(s)	193, 208, 232, 250, 759
MaeIII	GTNAC	4 cut(s)	130, 173, 255, 726
MalI	GATC	9 cut(s)	546, 558, 573, 592, 607, 621, 627, 768, 981
MbiI	CCGCTC	1 cut(s)	437
MboI	GATC	9 cut(s)	544, 556, 571, 590, 605, 619, 625, 766, 979
MflI	RGATCY	5 cut(s)	544, 556, 605, 625, 766
MhlI	GDGCHC	1 cut(s)	679
MluCI	AATT	2 cut(s)	562, 889
MlyI	GAGTC	2 cut(s)	14, 955
MmeI	TCCRAC	3 cut(s)	265, 322, 715
MroNI	GCCGGC	1 cut(s)	214
MseI	TTAA	3 cut(s)	95, 552, 792
MspR9I	CCNGG	7 cut(s)	582, 603, 630, 640, 798, 809, 810
MwoI	GCNNNNNNNGC	4 cut(s)	224, 311, 320, 446
NaeI	GCCGGC	1 cut(s)	216
NciI	CCSGG	7 cut(s)	582, 603, 630, 640, 798, 809, 810
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	9 cut(s)	544, 556, 571, 590, 605, 619, 625, 766, 979
NgoMIV	GCCGGC	1 cut(s)	214
NlaIII	CATG	4 cut(s)	70, 430, 784, 986
NlaIV	GGNNCC	7 cut(s)	60, 72, 309, 340, 464, 607, 768
NmuCI	GTSAC	2 cut(s)	130, 173
NsbI	TGCGCA	1 cut(s)	226
NspI	RCATGY	1 cut(s)	784
NspV	TTCGAA	1 cut(s)	379
PciI	ACATGT	1 cut(s)	780
PciSI	GCTCTTC	1 cut(s)	427
PdiI	GCCGGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	503, 816
PflFI	GACNNNGTC	1 cut(s)	640
PkrI	GCNGC	6 cut(s)	139, 229, 294, 325, 439, 451
PleI	GAGTC	2 cut(s)	13, 954
PmaCI	CACGTG	2 cut(s)	233, 251
PmlI	CACGTG	2 cut(s)	233, 251
PpsI	GAGTC	2 cut(s)	13, 954
Ppu21I	YACGTR	3 cut(s)	209, 233, 251
PscI	ACATGT	1 cut(s)	780
PshAI	GACNNNNGTC	1 cut(s)	924
Psp1406I	AACGTT	1 cut(s)	759
PspCI	CACGTG	2 cut(s)	233, 251
PspN4I	GGNNCC	7 cut(s)	60, 72, 309, 340, 464, 607, 768
PspPI	GGNCC	5 cut(s)	49, 58, 71, 169, 749
PsuI	RGATCY	5 cut(s)	544, 556, 605, 625, 766
PsyI	GACNNNGTC	1 cut(s)	640
SapI	GCTCTTC	1 cut(s)	427
SaqAI	TTAA	3 cut(s)	95, 552, 792
SatI	GCNGC	6 cut(s)	138, 228, 293, 324, 438, 450
Sau3AI	GATC	9 cut(s)	544, 556, 571, 590, 605, 619, 625, 766, 979
Sau96I	GGNCC	5 cut(s)	49, 58, 71, 169, 749
SchI	GAGTC	2 cut(s)	14, 955
ScrFI	CCNGG	7 cut(s)	582, 603, 630, 640, 798, 809, 810
SduI	GDGCHC	1 cut(s)	679
SfcI	CTRYAG	2 cut(s)	282, 1008
SfuI	TTCGAA	1 cut(s)	379
SinI	GGWCC	4 cut(s)	58, 71, 169, 749
SmaI	CCCGGG	1 cut(s)	810
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
SnaBI	TACGTA	1 cut(s)	209
Sse9I	AATT	2 cut(s)	562, 889
SsiI	CCGC	7 cut(s)	135, 138, 150, 305, 437, 665, 909
SspMI	CTAG	4 cut(s)	569, 680, 833, 990
StyD4I	CCNGG	7 cut(s)	580, 601, 628, 638, 796, 807, 808
StyI	CCWWGG	2 cut(s)	66, 165
TaaI	ACNGT	6 cut(s)	130, 162, 173, 411, 861, 923
TaiI	ACGT	5 cut(s)	196, 211, 235, 253, 762
TaqI	TCGA	3 cut(s)	379, 635, 814
TasI	AATT	2 cut(s)	562, 889
TauI	GCSGC	2 cut(s)	140, 440
TfiI	GAWTC	2 cut(s)	503, 816
Tru1I	TTAA	3 cut(s)	95, 552, 792
Tru9I	TTAA	3 cut(s)	95, 552, 792
TscAI	CASTG	4 cut(s)	46, 109, 391, 414
TseFI	GTSAC	2 cut(s)	130, 173
TseI	GCWGC	4 cut(s)	227, 292, 323, 449
Tsp45I	GTSAC	2 cut(s)	130, 173
TspGWI	ACGGA	3 cut(s)	204, 524, 720
TspMI	CCCGGG	1 cut(s)	808
TspRI	CASTG	4 cut(s)	46, 109, 391, 414
Tth111I	GACNNNGTC	1 cut(s)	640
VpaK11BI	GGWCC	4 cut(s)	58, 71, 169, 749
XbaI	TCTAGA	1 cut(s)	568
XceI	RCATGY	1 cut(s)	784
XmaI	CCCGGG	1 cut(s)	808
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	4 cut(s)	569, 680, 833, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.