Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007792

Physical Location & Seq

Genomic Coordinates Forward (+)

7842607 .. 7844649

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCTATTAACAACAACAACAACAACAACAACAATAACAACGATGGTCTTATGATCTCATCAAACGGAGCTTTAATCGAACAACAACCATCAGTCGTTGTGAAGAAACCACCGGCGAAAGATCGACATAGCAAAGTCGATGGAAGAGGGAGAAGAATCCGTATGCCGATTATATGTGCTGCTCGTGTTTTTCAGCTAACGAGAGAGCTTGGTCATAAGTCAGATGGCCAAACAATTGAATGGTTACTTCGTCAAGCAGAGCCTTCTATTATAGCTGCAACAGGAACTGGTACAACTCCAGCGAGTTTCTCAACTGCTTCTGTCTCTATCCGTGGAGCCACCAATTCTACTTCTTTAGATCATAAACCCACTTCTTTACTTGGTGGTACGTCACCGTTTATACTTGGGAAACGTGTTAGAGCTGATGAGGATAGTAATAATAGTCATAATCATAGTTCTGTTGGTAAAGATGAGACCTTTACGACAACACCAGCTGGGTTTTGGGCTGTTCCGGCGAGGCCGGATTTTGGACAAGTTTGGAGTTTTGCTGGAGCTCCACAAGAGATGTTTTTACAACAACAACATCATCATCAGCAACCATTGTTTGTTCATCAGCAACAGCAACAACAAGCTGCAATGGGTGAAGCTTCTGCTGCTAGAGTTGGGAATTATCTTCCGGGTCATCTTAATTTGCTTGCTTCTTTATCCGGTGGATCTCCCGGGTCGGATCGAAGAGAGGAAGATCCACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

TCP

Protein Analysis

250

Amino Acids

27.06

Weight (kDa)

9.25

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	39 - 153	1.7e-30	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35560 AT1G72010 AT3G45150 AT3G47620 AT5G08330 AT5G23280 AT5G41030
fragaria_vesca	FvH4_4g06720
malus_domestica	MD13G1238400.v1.1 MD16G1243300.v1.1
prunus_persica	Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1
pyrus_communis	pycom13g21080 pycom16g20410
rosa_chinensis	RchiOBHm_Chr4g0398661
rosa_laevigata	RLG00000009336
rosa_multiflora	Rmu_co8332803.1_g000001
rosa_rugosa	Rorug04G0010200
rosa_samantha	Rh4AG088200 Rh4BG084800 Rh4CG096400 Rh4DG079600
rosa_wichuraiana	Rw4G007310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	721, 735, 737
AcoI	YGGCCR	1 cut(s)	226
AfaI	GTAC	2 cut(s)	292, 388
AfiI	CCNNNNNNNGG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	239
AluBI	AGCT	9 cut(s)	71, 196, 208, 275, 422, 494, 554, 632, 647
AluI	AGCT	9 cut(s)	71, 196, 208, 275, 422, 494, 554, 632, 647
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	2 cut(s)	328, 467
AlwI	GGATC	3 cut(s)	721, 735, 737
AlwNI	CAGNNNCTG	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	719
AoxI	GGCC	2 cut(s)	226, 518
ApeKI	GCWGC	4 cut(s)	179, 275, 632, 653
AsuC2I	CCSGG	3 cut(s)	678, 720, 721
AsuHPI	GGTGA	2 cut(s)	384, 653
AvaI	CYCGRG	1 cut(s)	719
BalI	TGGCCA	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	556
BauI	CACGAG	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	4 cut(s)	166, 262, 619, 640
BccI	CCATC	4 cut(s)	38, 97, 134, 218
BcnI	CCSGG	3 cut(s)	678, 720, 721
BcoDI	GTCTC	2 cut(s)	328, 467
BfaI	CTAG	1 cut(s)	657
BisI	GCNGC	4 cut(s)	180, 276, 633, 654
BlsI	GCNGC	4 cut(s)	181, 277, 634, 655
Bme1390I	CCNGG	3 cut(s)	678, 720, 721
BmeT110I	CYCGRG	1 cut(s)	719
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	3 cut(s)	678, 720, 721
BpmI	CTGGAG	2 cut(s)	282, 570
BpuMI	CCSGG	3 cut(s)	678, 720, 721
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	331, 719
BsaWI	WCCGGW	1 cut(s)	707
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	642
BseDI	CCNNGG	2 cut(s)	331, 719
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMI	GCAATG	1 cut(s)	642
BseNI	ACTGG	1 cut(s)	292
BseXI	GCAGC	4 cut(s)	166, 262, 619, 640
BseYI	CCCAGC	1 cut(s)	494
BshFI	GGCC	2 cut(s)	228, 520
BsiHKAI	GWGCWC	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	719
BsiSI	CCGG	6 cut(s)	113, 512, 521, 677, 708, 720
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	2 cut(s)	328, 467
BsnI	GGCC	2 cut(s)	228, 520
Bso31I	GGTCTC	1 cut(s)	467
BsoBI	CYCGRG	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	6 cut(s)	54, 121, 358, 713, 727, 742
BspANI	GGCC	2 cut(s)	228, 520
BspLI	GGNNCC	1 cut(s)	337
BspPI	GGATC	3 cut(s)	721, 735, 737
BspTNI	GGTCTC	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	642
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	331, 719
BssMI	GATC	6 cut(s)	54, 121, 358, 713, 727, 742
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	2 cut(s)	139, 727
BstC8I	GCNNGC	1 cut(s)	696
BstDSI	CCRYGG	1 cut(s)	331
BstKTI	GATC	6 cut(s)	57, 124, 361, 716, 730, 745
BstMAI	GTCTC	2 cut(s)	328, 467
BstMBI	GATC	6 cut(s)	54, 121, 358, 713, 727, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	512, 653
BstSCI	CCNGG	3 cut(s)	676, 718, 719
BstV1I	GCAGC	4 cut(s)	166, 262, 619, 640
BstX2I	RGATCY	2 cut(s)	713, 742
BstYI	RGATCY	2 cut(s)	713, 742
BsuRI	GGCC	2 cut(s)	228, 520
BtgI	CCRYGG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	696
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	112
Cfr9I	CCCGGG	1 cut(s)	719
Csp6I	GTAC	2 cut(s)	291, 387
CviQI	GTAC	2 cut(s)	291, 387
DpnI	GATC	6 cut(s)	56, 123, 360, 715, 729, 744
DpnII	GATC	6 cut(s)	54, 121, 358, 713, 727, 742
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	139, 727
EarI	CTCTTC	2 cut(s)	139, 727
Ecl136II	GAGCTC	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	556
Eco31I	GGTCTC	1 cut(s)	467
Eco53kI	GAGCTC	1 cut(s)	554
Eco88I	CYCGRG	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	554
EcoT38I	GRGCYC	1 cut(s)	556
Fnu4HI	GCNGC	4 cut(s)	180, 276, 633, 654
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	4 cut(s)	180, 276, 633, 654
FspBI	CTAG	1 cut(s)	657
GluI	GCNGC	4 cut(s)	180, 276, 633, 654
GsaI	CCCAGC	1 cut(s)	498
GsuI	CTGGAG	2 cut(s)	282, 570
HaeIII	GGCC	2 cut(s)	228, 520
HapII	CCGG	6 cut(s)	113, 512, 521, 677, 708, 720
HindIII	AAGCTT	1 cut(s)	645
HinfI	GANTC	1 cut(s)	156
HpaII	CCGG	6 cut(s)	113, 512, 521, 677, 708, 720
HphI	GGTGA	2 cut(s)	384, 653
Hpy188I	TCNGA	2 cut(s)	223, 727
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4IV	ACGT	3 cut(s)	389, 412, 748
HpyCH4V	TGCA	2 cut(s)	278, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	512, 653
HpySE526I	ACGT	3 cut(s)	389, 412, 748
Kzo9I	GATC	6 cut(s)	54, 121, 358, 713, 727, 742
LmnI	GCTCC	4 cut(s)	68, 335, 551, 559
Lsp1109I	GCAGC	4 cut(s)	166, 262, 619, 640
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	3 cut(s)	389, 412, 748
MaeIII	GTNAC	2 cut(s)	243, 390
MalI	GATC	6 cut(s)	56, 123, 360, 715, 729, 744
MboI	GATC	6 cut(s)	54, 121, 358, 713, 727, 742
MboII	GAAGA	6 cut(s)	115, 156, 165, 665, 744, 752
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	2 cut(s)	713, 742
MhlI	GDGCHC	1 cut(s)	556
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	4 cut(s)	234, 343, 667, 688
MluNI	TGGCCA	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	705
MnlI	CCTC	4 cut(s)	140, 421, 510, 730
Mox20I	TGGCCA	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	228
MseI	TTAA	4 cut(s)	9, 74, 687, 751
Msp20I	TGGCCA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	6 cut(s)	113, 512, 521, 677, 708, 720
MspR9I	CCNGG	3 cut(s)	678, 720, 721
MunI	CAATTG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	512, 653
NciI	CCSGG	3 cut(s)	678, 720, 721
NdeII	GATC	6 cut(s)	54, 121, 358, 713, 727, 742
NlaIV	GGNNCC	1 cut(s)	337
NmuCI	GTSAC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	156
PkrI	GCNGC	4 cut(s)	181, 277, 634, 655
Psp124BI	GAGCTC	1 cut(s)	556
PspFI	CCCAGC	1 cut(s)	494
PspN4I	GGNNCC	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	713, 742
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	2 cut(s)	292, 388
RsaNI	GTAC	2 cut(s)	291, 387
SacI	GAGCTC	1 cut(s)	556
SaqAI	TTAA	4 cut(s)	9, 74, 687, 751
SatI	GCNGC	4 cut(s)	180, 276, 633, 654
Sau3AI	GATC	6 cut(s)	54, 121, 358, 713, 727, 742
ScrFI	CCNGG	3 cut(s)	678, 720, 721
SduI	GDGCHC	1 cut(s)	556
SgrAI	CRCCGGYG	1 cut(s)	112
SmaI	CCCGGG	1 cut(s)	721
Sse9I	AATT	4 cut(s)	234, 343, 667, 688
SspMI	CTAG	1 cut(s)	657
SstI	GAGCTC	1 cut(s)	556
StyD4I	CCNGG	3 cut(s)	676, 718, 719
TaaI	ACNGT	1 cut(s)	396
TaiI	ACGT	3 cut(s)	392, 415, 751
TaqI	TCGA	4 cut(s)	78, 124, 138, 730
TasI	AATT	4 cut(s)	234, 343, 667, 688
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	4 cut(s)	9, 74, 687, 751
Tru9I	TTAA	4 cut(s)	9, 74, 687, 751
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	4 cut(s)	179, 275, 632, 653
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	1 cut(s)	599
TspGWI	ACGGA	3 cut(s)	81, 149, 320
TspMI	CCCGGG	1 cut(s)	719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	498
XmaI	CCCGGG	1 cut(s)	719
XspI	CTAG	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.