AT1G72010
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007792
Physical Location & Seq
Forward (+)
27107558 .. 27109275
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72010.1

Sequence Viewer

Length: 1128 bp
ATGAATCAGAATTCCTCTGTTGCGGAGGCGACGCTTCAGCTTAATTCCGGTGAAAAACCATCGCCGGGATCGATTCCGTTTATCTCCTCTGGTCAACACGGAAACATAAGCACTTCAGCGACGAGTTCGACAAGCACAAGCTCAGGTAGTGCTCTTGCCGTAGTTAAATCCGCCGTGAAAAAACCAACTAAAGATCGGCATACTAAAGTCGATGGTCGTGGACGGCGAATTCGTATGCCGGCGATGTGCGCCGCTAGAGTTTTTCAGTTAACAAGAGAGTTAGGTCATAAATCTGATGGAGAAACCATCGAGTGGCTTCTCCAACAAGCTGAGCCAGCTATCATCGCTTCTACTGGTACTGGTACGATCCCGGCGAATTTCTCAACACTTAACGCTTCTTTACGCAGTGGTGGTGGCTCCACCTTGTTTTCTCAGGCGTCGAAATCTTCTTCTTCGCCACTCTCGTTTCATAGCACTGGAATGTCTCTTTATGAAGACAATAACGGTACTAACGGATCATCGGTAGATCCTTCTAGGAAGTTACTGAATTCAGCCGCAAACGCGGCTGTTTTCGGTTTTCATCATCAGATGTATCCACCAATAATGTCGACGGAGAGAAATCCGAACACTTTAGTGAAACCTTATAGAGAAGATTACTTTAAGGAGCCGAGTTCTGCAGCGGAACCAAGCGAGAGTTCTCAGAAAGCGAGTCAGTTTCAGGAGCAAGAGTTAGCTCAGGGTCGTGGGACGGCTAATGTGGTGCCTCAACCTATGTGGGCGGTTGCGCCAGGGACTACGAATGGAGGTAGTGCGTTCTGGATGCTTCCGATGAGCGGTTCGGGTGGGCGGGAGCAGATGCAGCAGCAGCCTGGTCACCAAATGTGGGCGTTTAATCCAGGGAATTATCCAGTTGGGACAGGACGAGTAGTAACTGCACCAATGGGGTCAATGATGTTGGGAGGTCAACAGCTAGGATTAGGAGTGGCAGAGGGCAACATGGCGGCTGCAATGCGTGGCAGTAGAGGCGATGGTTTGGCCATGACTCTAGATCAACATCAGCATCAGCTCCAACATCAAGAGCCAAACCAGAGTCAAGCTAGTGAAAATGGTGGTGATGACAAAAAGTGA

Protein Analysis

375

Amino Acids

39.6

Weight (kDa)

8.61

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 63 - 159 7.5e-31 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 760
AccB7I CCANNNNNTGG 1 cut(s) 312
AccBSI CCGCTC 1 cut(s) 834
AccI GTMKAC 1 cut(s) 608
AccII CGCG 1 cut(s) 563
AclWI GGATC 4 cut(s) 76, 361, 521, 523
AcoI YGGCCR 1 cut(s) 1035
AcsI RAATTY 4 cut(s) 10, 228, 376, 547
AcuI CTGAAG 2 cut(s) 20, 99
AcyI GRCGYC 1 cut(s) 437
AfaI GTAC 3 cut(s) 358, 364, 508
AfiI CCNNNNNNNGG 4 cut(s) 65, 312, 833, 883
AjnI CCWGG 3 cut(s) 787, 868, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 679, 711
AleI CACNNNNGTG 1 cut(s) 632
AluBI AGCT 8 cut(s) 40, 141, 329, 338, 734, 970, 1066, 1097
AluI AGCT 8 cut(s) 40, 141, 329, 338, 734, 970, 1066, 1097
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 489
AlwI GGATC 4 cut(s) 76, 361, 521, 523
AoxI GGCC 1 cut(s) 1035
ApeKI GCWGC 5 cut(s) 677, 859, 862, 865, 1004
ApoI RAATTY 4 cut(s) 10, 228, 376, 547
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspLEI GCGC 2 cut(s) 251, 787
AsuC2I CCSGG 2 cut(s) 66, 371
AsuHPI GGTGA 3 cut(s) 62, 866, 1124
BalI TGGCCA 1 cut(s) 1037
BanI GGYRCC 1 cut(s) 760
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 5 cut(s) 689, 871, 874, 877, 991
BccI CCATC 5 cut(s) 67, 206, 290, 314, 1022
BceAI ACGGC 4 cut(s) 143, 158, 239, 765
BciT130I CCWGG 3 cut(s) 789, 870, 897
BciVI GTATCC 1 cut(s) 603
BcnI CCSGG 2 cut(s) 66, 371
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 5 cut(s) 255, 534, 971, 1046, 1098
BfmI CTRYAG 1 cut(s) 675
BfuI GTATCC 1 cut(s) 603
BisI GCNGC 9 cut(s) 252, 555, 564, 678, 860, 863, 866, 1002, 1005
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 9 cut(s) 253, 556, 565, 679, 861, 864, 867, 1003, 1006
Bme1390I CCNGG 5 cut(s) 66, 371, 789, 870, 897
BmiI GGNNCC 4 cut(s) 418, 666, 684, 762
BmrFI CCNGG 5 cut(s) 66, 371, 789, 870, 897
BmsI GCATC 3 cut(s) 810, 846, 1069
BpiI GAAGAC 1 cut(s) 501
Bpu10I CCTNAGC 2 cut(s) 142, 735
Bpu1102I GCTNAGC 1 cut(s) 330
BpuMI CCSGG 2 cut(s) 66, 371
Bsa29I ATCGAT 1 cut(s) 71
BsaBI GATNNNNATC 1 cut(s) 1053
BsaHI GRCGYC 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 788, 896
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 713, 743
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 312, 833, 883
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 4 cut(s) 358, 364, 481, 908
Bse3DI GCAATG 1 cut(s) 1014
Bse8I GATNNNNATC 1 cut(s) 1053
BseBI CCWGG 3 cut(s) 789, 870, 897
BseCI ATCGAT 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 788, 896
BseGI GGATG 1 cut(s) 825
BseJI GATNNNNATC 1 cut(s) 1053
BseLI CCNNNNNNNGG 4 cut(s) 65, 312, 833, 883
BseMI GCAATG 1 cut(s) 1014
BseMII CTCAG 5 cut(s) 156, 321, 446, 713, 749
BseNI ACTGG 4 cut(s) 358, 364, 481, 908
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 5 cut(s) 689, 871, 874, 877, 991
BsgI GTGCAG 1 cut(s) 918
Bsh1236I CGCG 1 cut(s) 563
BshFI GGCC 1 cut(s) 1037
BshNI GGYRCC 1 cut(s) 760
BshVI ATCGAT 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 4 cut(s) 48, 65, 239, 371
BslFI GGGAC 3 cut(s) 760, 805, 928
BslI CCNNNNNNNGG 4 cut(s) 65, 312, 833, 883
BsmAI GTCTC 1 cut(s) 489
BsmFI GGGAC 3 cut(s) 760, 805, 928
BsnI GGCC 1 cut(s) 1037
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 6 cut(s) 68, 193, 366, 515, 526, 1048
Bsp1720I GCTNAGC 1 cut(s) 330
BspANI GGCC 1 cut(s) 1037
BspCNI CTCAG 5 cut(s) 155, 322, 445, 712, 748
BspDI ATCGAT 1 cut(s) 71
BspFNI CGCG 1 cut(s) 563
BspLI GGNNCC 4 cut(s) 418, 666, 684, 762
BspMAI CTGCAG 1 cut(s) 679
BspPI GGATC 4 cut(s) 76, 361, 521, 523
BspT107I GGYRCC 1 cut(s) 760
BsrBI CCGCTC 1 cut(s) 834
BsrDI GCAATG 1 cut(s) 1014
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 4 cut(s) 358, 364, 481, 908
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 788, 896
BssMI GATC 6 cut(s) 68, 193, 366, 515, 526, 1048
BssNI GRCGYC 1 cut(s) 437
Bst2UI CCWGG 3 cut(s) 789, 870, 897
Bst4CI ACNGT 1 cut(s) 506
BstACI GRCGYC 1 cut(s) 437
BstC8I GCNNGC 2 cut(s) 240, 336
BstDEI CTNAG 5 cut(s) 142, 330, 432, 699, 735
BstEII GGTNACC 1 cut(s) 872
BstF5I GGATG 1 cut(s) 825
BstFNI CGCG 1 cut(s) 563
BstHHI GCGC 2 cut(s) 251, 787
BstKTI GATC 6 cut(s) 71, 196, 369, 518, 529, 1051
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 6 cut(s) 68, 193, 366, 515, 526, 1048
BstMWI GCNNNNNNNGC 8 cut(s) 248, 335, 344, 560, 563, 859, 865, 1023
BstNI CCWGG 3 cut(s) 789, 870, 897
BstPI GGTNACC 1 cut(s) 872
BstSCI CCNGG 5 cut(s) 64, 369, 787, 868, 895
BstSFI CTRYAG 1 cut(s) 675
BstUI CGCG 1 cut(s) 563
BstV1I GCAGC 5 cut(s) 689, 871, 874, 877, 991
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
Bsu15I ATCGAT 1 cut(s) 71
BsuI GTATCC 1 cut(s) 603
BsuRI GGCC 1 cut(s) 1037
BsuTUI ATCGAT 1 cut(s) 71
BtgZI GCGATG 4 cut(s) 45, 257, 328, 1041
BtsCI GGATG 1 cut(s) 825
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 412, 474
Cac8I GCNNGC 2 cut(s) 240, 336
CfoI GCGC 2 cut(s) 251, 787
Cfr10I RCCGGY 1 cut(s) 238
ClaI ATCGAT 1 cut(s) 71
CseI GACGC 2 cut(s) 40, 426
Csp6I GTAC 3 cut(s) 357, 363, 507
CspCI CAANNNNNGTGG 2 cut(s) 755, 790
CviAII CATG 2 cut(s) 997, 1039
CviQI GTAC 3 cut(s) 357, 363, 507
DdeI CTNAG 5 cut(s) 142, 330, 432, 699, 735
DpnI GATC 6 cut(s) 70, 195, 368, 517, 528, 1050
DpnII GATC 6 cut(s) 68, 193, 366, 515, 526, 1048
EaeI YGGCCR 1 cut(s) 1035
EciI GGCGGA 1 cut(s) 160
Eco57I CTGAAG 2 cut(s) 20, 99
Eco91I GGTNACC 1 cut(s) 872
EcoO65I GGTNACC 1 cut(s) 872
EcoRI GAATTC 3 cut(s) 10, 228, 547
EcoRII CCWGG 3 cut(s) 787, 868, 895
FaeI CATG 2 cut(s) 1000, 1042
FaqI GGGAC 3 cut(s) 760, 805, 928
FatI CATG 2 cut(s) 996, 1038
FauI CCCGC 1 cut(s) 840
FblI GTMKAC 1 cut(s) 608
Fnu4HI GCNGC 9 cut(s) 252, 555, 564, 678, 860, 863, 866, 1002, 1005
FokI GGATG 1 cut(s) 832
Fsp4HI GCNGC 9 cut(s) 252, 555, 564, 678, 860, 863, 866, 1002, 1005
FspBI CTAG 5 cut(s) 255, 534, 971, 1046, 1098
GlaI GCGC 2 cut(s) 250, 786
GluI GCNGC 9 cut(s) 252, 555, 564, 678, 860, 863, 866, 1002, 1005
HaeIII GGCC 1 cut(s) 1037
HapII CCGG 4 cut(s) 48, 65, 239, 371
HgaI GACGC 2 cut(s) 40, 426
HhaI GCGC 2 cut(s) 251, 787
Hin1I GRCGYC 1 cut(s) 437
Hin1II CATG 2 cut(s) 1000, 1042
Hin6I GCGC 2 cut(s) 249, 785
HinP1I GCGC 2 cut(s) 249, 785
HincII GTYRAC 4 cut(s) 95, 270, 609, 965
HindII GTYRAC 4 cut(s) 95, 270, 609, 965
HinfI GANTC 5 cut(s) 4, 73, 709, 1042, 1090
HpaI GTTAAC 1 cut(s) 270
HpaII CCGG 4 cut(s) 48, 65, 239, 371
HphI GGTGA 3 cut(s) 62, 866, 1124
Hpy166II GTNNAC 5 cut(s) 95, 221, 270, 609, 965
Hpy188I TCNGA 6 cut(s) 9, 295, 588, 624, 702, 828
Hpy188III TCNNGA 4 cut(s) 719, 817, 1046, 1076
Hpy8I GTNNAC 5 cut(s) 95, 221, 270, 609, 965
Hpy99I CGWCG 4 cut(s) 34, 124, 442, 613
HpyAV CCTTC 1 cut(s) 540
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4V TGCA 4 cut(s) 677, 859, 935, 1007
HpyF10VI GCNNNNNNNGC 8 cut(s) 248, 335, 344, 560, 563, 859, 865, 1023
HpyF3I CTNAG 5 cut(s) 142, 330, 432, 699, 735
Hsp92I GRCGYC 1 cut(s) 437
Hsp92II CATG 2 cut(s) 1000, 1042
HspAI GCGC 2 cut(s) 249, 785
KroI GCCGGC 1 cut(s) 238
KroNI GCCGGC 1 cut(s) 240
KspAI GTTAAC 1 cut(s) 270
Kzo9I GATC 6 cut(s) 68, 193, 366, 515, 526, 1048
LmnI GCTCC 5 cut(s) 422, 664, 721, 850, 1071
Lsp1109I GCAGC 5 cut(s) 689, 871, 874, 877, 991
LweI GCATC 3 cut(s) 810, 846, 1069
MaeI CTAG 5 cut(s) 255, 534, 971, 1046, 1098
MaeIII GTNAC 3 cut(s) 540, 872, 928
MalI GATC 6 cut(s) 70, 195, 368, 517, 528, 1050
MbiI CCGCTC 1 cut(s) 834
MboI GATC 6 cut(s) 68, 193, 366, 515, 526, 1048
MboII GAAGA 5 cut(s) 438, 441, 444, 506, 662
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 1 cut(s) 154
MlsI TGGCCA 1 cut(s) 1037
MluCI AATT 6 cut(s) 10, 43, 228, 376, 547, 901
MluNI TGGCCA 1 cut(s) 1037
MlyI GAGTC 3 cut(s) 718, 1036, 1099
MmeI TCCRAC 2 cut(s) 346, 1093
MnlI CCTC 8 cut(s) 19, 25, 97, 774, 797, 953, 982, 1016
Mox20I TGGCCA 1 cut(s) 1037
MroNI GCCGGC 1 cut(s) 238
MscI TGGCCA 1 cut(s) 1037
MseI TTAA 6 cut(s) 42, 165, 269, 390, 660, 891
MslI CAYNNNNRTG 2 cut(s) 479, 632
Msp20I TGGCCA 1 cut(s) 1037
MspA1I CMGCKG 1 cut(s) 680
MspI CCGG 4 cut(s) 48, 65, 239, 371
MspR9I CCNGG 5 cut(s) 66, 371, 789, 870, 897
MvaI CCWGG 3 cut(s) 789, 870, 897
MvnI CGCG 1 cut(s) 563
MwoI GCNNNNNNNGC 8 cut(s) 248, 335, 344, 560, 563, 859, 865, 1023
NaeI GCCGGC 1 cut(s) 240
NciI CCSGG 2 cut(s) 66, 371
NdeII GATC 6 cut(s) 68, 193, 366, 515, 526, 1048
NgoMIV GCCGGC 1 cut(s) 238
NlaIII CATG 2 cut(s) 1000, 1042
NlaIV GGNNCC 4 cut(s) 418, 666, 684, 762
NmeAIII GCCGAG 1 cut(s) 693
NmuCI GTSAC 1 cut(s) 872
OliI CACNNNNGTG 1 cut(s) 632
PcsI WCGNNNNNNNCGW 5 cut(s) 68, 223, 229, 371, 461
PdiI GCCGGC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 4, 73
PflMI CCANNNNNTGG 1 cut(s) 312
PkrI GCNGC 9 cut(s) 253, 556, 565, 679, 861, 864, 867, 1003, 1006
PleI GAGTC 3 cut(s) 717, 1036, 1098
PpsI GAGTC 3 cut(s) 717, 1036, 1098
Psp6I CCWGG 3 cut(s) 787, 868, 895
PspEI GGTNACC 1 cut(s) 872
PspGI CCWGG 3 cut(s) 787, 868, 895
PspN4I GGNNCC 4 cut(s) 418, 666, 684, 762
PstI CTGCAG 1 cut(s) 679
PsuI RGATCY 1 cut(s) 526
RsaI GTAC 3 cut(s) 358, 364, 508
RsaNI GTAC 3 cut(s) 357, 363, 507
RseI CAYNNNNRTG 2 cut(s) 479, 632
SalI GTCGAC 1 cut(s) 607
SaqAI TTAA 6 cut(s) 42, 165, 269, 390, 660, 891
SatI GCNGC 9 cut(s) 252, 555, 564, 678, 860, 863, 866, 1002, 1005
Sau3AI GATC 6 cut(s) 68, 193, 366, 515, 526, 1048
SchI GAGTC 3 cut(s) 718, 1036, 1099
ScrFI CCNGG 5 cut(s) 66, 371, 789, 870, 897
SduI GDGCHC 1 cut(s) 154
SfaNI GCATC 3 cut(s) 810, 846, 1069
SfcI CTRYAG 1 cut(s) 675
SmiMI CAYNNNNRTG 2 cut(s) 479, 632
Sse9I AATT 6 cut(s) 10, 43, 228, 376, 547, 901
SspMI CTAG 5 cut(s) 255, 534, 971, 1046, 1098
StyD4I CCNGG 5 cut(s) 64, 369, 787, 868, 895
TaaI ACNGT 1 cut(s) 506
TaqI TCGA 6 cut(s) 71, 128, 210, 309, 440, 608
TasI AATT 6 cut(s) 10, 43, 228, 376, 547, 901
TauI GCSGC 4 cut(s) 254, 557, 566, 1004
TfiI GAWTC 2 cut(s) 4, 73
Tru1I TTAA 6 cut(s) 42, 165, 269, 390, 660, 891
Tru9I TTAA 6 cut(s) 42, 165, 269, 390, 660, 891
TscAI CASTG 2 cut(s) 412, 481
TseFI GTSAC 1 cut(s) 872
TseI GCWGC 5 cut(s) 677, 859, 862, 865, 1004
Tsp45I GTSAC 1 cut(s) 872
TspDTI ATGAA 4 cut(s) 17, 458, 507, 569
TspGWI ACGGA 4 cut(s) 66, 114, 528, 626
TspRI CASTG 2 cut(s) 412, 481
Van91I CCANNNNNTGG 1 cut(s) 312
XapI RAATTY 4 cut(s) 10, 228, 376, 547
XbaI TCTAGA 1 cut(s) 1045
XmiI GTMKAC 1 cut(s) 608
XspI CTAG 5 cut(s) 255, 534, 971, 1046, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.